EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSNBRG00000020520 (Gene tree)
Gene ID: 102800022
Gene Symbol: vars
Alias: CHUNP6879|im:7137378|vars2|wu:fb07a11|wu:fb07d10
Full Name: valine--tRNA ligase-like
Gene Type: protein_coding
Species: Neolamprologus_brichardi
Status: putative
Strand: Minus strand
Length: 17138 bases
Position: chrJH422369.1:705161-722298
Accession: 102800022
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNBRP00000026990	tRNA-synt_1g	PF09334.11	2.5e-13	1	1
ENSNBRP00000026943	tRNA-synt_1g	PF09334.11	3.6e-13	1	1
ENSNBRP00000026990	Anticodon_1	PF08264.13	3e-36	1	1
ENSNBRP00000026943	Anticodon_1	PF08264.13	3.1e-36	1	1
ENSNBRP00000026990	tRNA-synt_1	PF00133.22	6.7e-207	1	1
ENSNBRP00000026943	tRNA-synt_1	PF00133.22	7.1e-207	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNBRT00000027651	-	6203	XM_006802822	ENSNBRP00000026943	1276 (aa)	XP_006802885	-
ENSNBRT00000027698	-	3684	-	ENSNBRP00000026990	1227 (aa)	-	-

Gene Model

Click here to download ENSNBRG00000020520's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSNBRG00000020520's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSNBRG00000020520	vars	58	44.780	ENSNBRG00000001624	vars2	61	44.780

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNBRG00000020520	vars	100	64.336	ENSG00000204394	VARS	99	71.779	Homo_sapiens
ENSNBRG00000020520	vars	98	88.322	ENSAPOG00000020691	vars	99	88.322	Acanthochromis_polyacanthus
ENSNBRG00000020520	vars	98	88.322	ENSAPOG00000020921	vars	99	88.322	Acanthochromis_polyacanthus
ENSNBRG00000020520	vars	100	64.674	ENSAMEG00000006417	VARS	100	64.733	Ailuropoda_melanoleuca
ENSNBRG00000020520	vars	100	93.192	ENSACIG00000013752	vars	100	93.192	Amphilophus_citrinellus
ENSNBRG00000020520	vars	100	91.693	ENSAOCG00000002447	vars	99	91.693	Amphiprion_ocellaris
ENSNBRG00000020520	vars	100	91.614	ENSAPEG00000010638	vars	99	91.614	Amphiprion_percula
ENSNBRG00000020520	vars	100	87.379	ENSATEG00000020219	vars	100	87.379	Anabas_testudineus
ENSNBRG00000020520	vars	90	71.688	ENSACAG00000029133	-	99	71.688	Anolis_carolinensis
ENSNBRG00000020520	vars	100	64.491	ENSANAG00000015453	VARS	100	64.729	Aotus_nancymaae
ENSNBRG00000020520	vars	100	99.373	ENSACLG00000025699	vars	97	99.373	Astatotilapia_calliptera
ENSNBRG00000020520	vars	96	82.797	ENSAMXG00000017716	vars	96	82.797	Astyanax_mexicanus
ENSNBRG00000020520	vars	100	64.724	ENSBTAG00000005631	VARS	100	64.961	Bos_taurus
ENSNBRG00000020520	vars	100	64.336	ENSCJAG00000002604	VARS	100	64.574	Callithrix_jacchus
ENSNBRG00000020520	vars	100	64.258	ENSCAFG00000000636	VARS	100	64.319	Canis_familiaris
ENSNBRG00000020520	vars	94	65.534	ENSCAFG00020020790	VARS	96	65.594	Canis_lupus_dingo
ENSNBRG00000020520	vars	100	64.802	ENSCHIG00000011008	VARS	100	65.039	Capra_hircus
ENSNBRG00000020520	vars	100	64.103	ENSTSYG00000001567	VARS	100	64.341	Carlito_syrichta
ENSNBRG00000020520	vars	91	67.786	ENSCAPG00000013736	VARS	98	67.642	Cavia_aperea
ENSNBRG00000020520	vars	100	64.419	ENSCPOG00000000870	VARS	100	64.136	Cavia_porcellus
ENSNBRG00000020520	vars	100	64.546	ENSCCAG00000035656	VARS	100	64.779	Cebus_capucinus
ENSNBRG00000020520	vars	100	64.496	ENSCATG00000022394	VARS	100	64.806	Cercocebus_atys
ENSNBRG00000020520	vars	93	63.502	ENSCLAG00000009470	VARS	97	63.287	Chinchilla_lanigera
ENSNBRG00000020520	vars	100	64.341	ENSCSAG00000008784	VARS	100	64.651	Chlorocebus_sabaeus
ENSNBRG00000020520	vars	80	73.306	ENSCPBG00000007943	VARS	97	73.306	Chrysemys_picta_bellii
ENSNBRG00000020520	vars	100	64.496	ENSCANG00000033570	VARS	100	64.806	Colobus_angolensis_palliatus
ENSNBRG00000020520	vars	100	63.792	ENSCGRG00001005686	Vars	100	64.109	Cricetulus_griseus_chok1gshd
ENSNBRG00000020520	vars	93	61.873	ENSCGRG00000013352	Vars	78	62.213	Cricetulus_griseus_crigri
ENSNBRG00000020520	vars	100	82.929	ENSCSEG00000019652	vars	100	82.929	Cynoglossus_semilaevis
ENSNBRG00000020520	vars	100	91.693	ENSCVAG00000022398	vars	100	91.693	Cyprinodon_variegatus
ENSNBRG00000020520	vars	100	84.182	ENSDARG00000044575	vars	100	84.182	Danio_rerio
ENSNBRG00000020520	vars	82	70.342	ENSDORG00000016433	Vars	94	70.427	Dipodomys_ordii
ENSNBRG00000020520	vars	68	73.905	ENSETEG00000003824	VARS	76	73.905	Echinops_telfairi
ENSNBRG00000020520	vars	51	73.418	ENSEBUG00000007086	vars	82	72.790	Eptatretus_burgeri
ENSNBRG00000020520	vars	59	64.843	ENSEBUG00000004637	vars	100	65.116	Eptatretus_burgeri
ENSNBRG00000020520	vars	100	65.113	ENSEASG00005015673	VARS	100	65.349	Equus_asinus_asinus
ENSNBRG00000020520	vars	100	64.907	ENSECAG00000014620	VARS	100	65.066	Equus_caballus
ENSNBRG00000020520	vars	72	71.178	ENSEEUG00000004116	VARS	73	71.178	Erinaceus_europaeus
ENSNBRG00000020520	vars	100	83.853	ENSELUG00000006550	vars	97	83.748	Esox_lucius
ENSNBRG00000020520	vars	100	64.724	ENSFCAG00000004510	VARS	100	64.884	Felis_catus
ENSNBRG00000020520	vars	83	69.368	ENSFDAG00000011401	VARS	100	69.003	Fukomys_damarensis
ENSNBRG00000020520	vars	100	90.047	ENSFHEG00000010672	vars	100	90.047	Fundulus_heteroclitus
ENSNBRG00000020520	vars	100	81.776	ENSGMOG00000014908	vars	100	81.776	Gadus_morhua
ENSNBRG00000020520	vars	100	90.987	ENSGAFG00000021630	vars	100	90.987	Gambusia_affinis
ENSNBRG00000020520	vars	93	90.428	ENSGACG00000009601	vars	100	86.072	Gasterosteus_aculeatus
ENSNBRG00000020520	vars	50	59.813	ENSGAGG00000006508	-	91	62.914	Gopherus_agassizii
ENSNBRG00000020520	vars	100	64.574	ENSGGOG00000011364	VARS	100	64.884	Gorilla_gorilla
ENSNBRG00000020520	vars	100	99.451	ENSHBUG00000017151	vars	97	99.451	Haplochromis_burtoni
ENSNBRG00000020520	vars	100	64.075	ENSHGLG00000011646	VARS	100	64.075	Heterocephalus_glaber_female
ENSNBRG00000020520	vars	93	61.538	ENSHGLG00100018062	VARS	99	61.538	Heterocephalus_glaber_male
ENSNBRG00000020520	vars	99	85.200	ENSHCOG00000012198	vars	99	85.379	Hippocampus_comes
ENSNBRG00000020520	vars	100	83.125	ENSIPUG00000005218	vars	100	83.203	Ictalurus_punctatus
ENSNBRG00000020520	vars	100	64.802	ENSSTOG00000013112	VARS	100	64.729	Ictidomys_tridecemlineatus
ENSNBRG00000020520	vars	100	64.264	ENSJJAG00000019749	-	100	64.025	Jaculus_jaculus
ENSNBRG00000020520	vars	100	52.615	ENSJJAG00000015343	-	98	54.575	Jaculus_jaculus
ENSNBRG00000020520	vars	100	87.147	ENSKMAG00000009455	vars	100	87.147	Kryptolebias_marmoratus
ENSNBRG00000020520	vars	100	87.348	ENSLBEG00000010341	vars	100	86.753	Labrus_bergylta
ENSNBRG00000020520	vars	94	66.557	ENSLACG00000015232	VARS	99	66.749	Latimeria_chalumnae
ENSNBRG00000020520	vars	100	75.255	ENSLOCG00000004240	vars	100	75.489	Lepisosteus_oculatus
ENSNBRG00000020520	vars	100	64.386	ENSLAFG00000023090	VARS	100	64.386	Loxodonta_africana
ENSNBRG00000020520	vars	100	64.341	ENSMFAG00000001032	VARS	100	64.651	Macaca_fascicularis
ENSNBRG00000020520	vars	100	64.341	ENSMMUG00000006828	VARS	100	64.651	Macaca_mulatta
ENSNBRG00000020520	vars	100	64.341	ENSMNEG00000042072	VARS	100	64.651	Macaca_nemestrina
ENSNBRG00000020520	vars	100	64.419	ENSMLEG00000039307	VARS	100	64.729	Mandrillus_leucophaeus
ENSNBRG00000020520	vars	100	90.439	ENSMAMG00000003949	vars	100	90.439	Mastacembelus_armatus
ENSNBRG00000020520	vars	100	99.373	ENSMZEG00005018327	vars	97	99.373	Maylandia_zebra
ENSNBRG00000020520	vars	100	63.636	ENSMAUG00000006715	Vars	100	63.953	Mesocricetus_auratus
ENSNBRG00000020520	vars	100	64.546	ENSMICG00000003548	VARS	100	64.341	Microcebus_murinus
ENSNBRG00000020520	vars	100	63.064	ENSMOCG00000015404	Vars	100	63.178	Microtus_ochrogaster
ENSNBRG00000020520	vars	100	87.681	ENSMMOG00000015801	vars	100	87.681	Mola_mola
ENSNBRG00000020520	vars	100	64.961	ENSMODG00000015204	-	100	64.884	Monodelphis_domestica
ENSNBRG00000020520	vars	99	90.446	ENSMALG00000022532	vars	99	90.446	Monopterus_albus
ENSNBRG00000020520	vars	100	64.619	MGP_CAROLIEiJ_G0021491	Vars	100	64.729	Mus_caroli
ENSNBRG00000020520	vars	100	64.463	ENSMUSG00000007029	Vars	100	64.574	Mus_musculus
ENSNBRG00000020520	vars	100	64.386	MGP_PahariEiJ_G0020486	Vars	100	64.386	Mus_pahari
ENSNBRG00000020520	vars	100	64.541	MGP_SPRETEiJ_G0022396	Vars	100	64.651	Mus_spretus
ENSNBRG00000020520	vars	100	64.491	ENSMPUG00000010821	VARS	100	64.551	Mustela_putorius_furo
ENSNBRG00000020520	vars	78	67.627	ENSMLUG00000013126	VARS	100	67.778	Myotis_lucifugus
ENSNBRG00000020520	vars	100	64.230	ENSNGAG00000012151	Vars	100	64.336	Nannospalax_galili
ENSNBRG00000020520	vars	100	64.413	ENSNLEG00000006351	VARS	100	64.651	Nomascus_leucogenys
ENSNBRG00000020520	vars	96	71.792	ENSMEUG00000011378	VARS	100	62.986	Notamacropus_eugenii
ENSNBRG00000020520	vars	100	64.646	ENSOPRG00000003607	VARS	100	64.961	Ochotona_princeps
ENSNBRG00000020520	vars	100	63.453	ENSODEG00000017681	VARS	100	63.375	Octodon_degus
ENSNBRG00000020520	vars	100	97.036	ENSONIG00000013064	vars	100	98.955	Oreochromis_niloticus
ENSNBRG00000020520	vars	77	67.175	ENSOANG00000005400	VARS	98	66.940	Ornithorhynchus_anatinus
ENSNBRG00000020520	vars	100	62.986	ENSOCUG00000022463	VARS	100	62.722	Oryctolagus_cuniculus
ENSNBRG00000020520	vars	100	89.105	ENSORLG00000013063	vars	100	89.261	Oryzias_latipes
ENSNBRG00000020520	vars	100	89.679	ENSORLG00020003504	vars	100	89.758	Oryzias_latipes_hni
ENSNBRG00000020520	vars	100	89.906	ENSORLG00015009001	vars	100	89.906	Oryzias_latipes_hsok
ENSNBRG00000020520	vars	100	90.141	ENSOMEG00000015016	vars	100	90.141	Oryzias_melastigma
ENSNBRG00000020520	vars	100	64.180	ENSOGAG00000007515	VARS	100	64.050	Otolemur_garnettii
ENSNBRG00000020520	vars	100	64.336	ENSPPAG00000034012	VARS	100	64.574	Pan_paniscus
ENSNBRG00000020520	vars	100	64.724	ENSPPRG00000014855	VARS	100	64.884	Panthera_pardus
ENSNBRG00000020520	vars	85	68.836	ENSPTIG00000010462	VARS	94	68.502	Panthera_tigris_altaica
ENSNBRG00000020520	vars	100	64.258	ENSPTRG00000017985	VARS	100	64.496	Pan_troglodytes
ENSNBRG00000020520	vars	100	62.931	ENSPANG00000014565	VARS	100	63.174	Papio_anubis
ENSNBRG00000020520	vars	100	81.167	ENSPKIG00000016304	vars	100	81.167	Paramormyrops_kingsleyae
ENSNBRG00000020520	vars	100	84.826	ENSPMGG00000023909	vars	100	84.826	Periophthalmus_magnuspinnatus
ENSNBRG00000020520	vars	100	64.025	ENSPEMG00000006639	Vars	100	64.341	Peromyscus_maniculatus_bairdii
ENSNBRG00000020520	vars	100	64.574	ENSPCIG00000018553	VARS	100	64.651	Phascolarctos_cinereus
ENSNBRG00000020520	vars	100	90.752	ENSPFOG00000015690	vars	100	90.752	Poecilia_formosa
ENSNBRG00000020520	vars	100	90.596	ENSPLAG00000009590	vars	100	90.596	Poecilia_latipinna
ENSNBRG00000020520	vars	100	90.674	ENSPMEG00000004708	vars	100	90.674	Poecilia_mexicana
ENSNBRG00000020520	vars	100	88.221	ENSPREG00000013264	vars	100	88.221	Poecilia_reticulata
ENSNBRG00000020520	vars	100	63.015	ENSPPYG00000016460	VARS	100	62.893	Pongo_abelii
ENSNBRG00000020520	vars	86	65.719	ENSPCAG00000013565	VARS	86	65.719	Procavia_capensis
ENSNBRG00000020520	vars	100	64.363	ENSPCOG00000010942	VARS	100	64.650	Propithecus_coquereli
ENSNBRG00000020520	vars	100	62.374	ENSPVAG00000012403	VARS	100	62.713	Pteropus_vampyrus
ENSNBRG00000020520	vars	100	99.530	ENSPNYG00000022511	vars	100	99.530	Pundamilia_nyererei
ENSNBRG00000020520	vars	100	83.607	ENSPNAG00000020962	vars	100	83.841	Pygocentrus_nattereri
ENSNBRG00000020520	vars	100	64.336	ENSRNOG00000000867	Vars	100	64.164	Rattus_norvegicus
ENSNBRG00000020520	vars	100	64.419	ENSRBIG00000041669	VARS	100	64.729	Rhinopithecus_bieti
ENSNBRG00000020520	vars	100	64.419	ENSRROG00000045490	VARS	100	64.729	Rhinopithecus_roxellana
ENSNBRG00000020520	vars	100	64.180	ENSSBOG00000035402	VARS	100	64.419	Saimiri_boliviensis_boliviensis
ENSNBRG00000020520	vars	100	64.049	ENSSHAG00000006937	VARS	100	64.160	Sarcophilus_harrisii
ENSNBRG00000020520	vars	100	80.748	ENSSFOG00015014272	vars	99	85.366	Scleropages_formosus
ENSNBRG00000020520	vars	100	89.280	ENSSMAG00000009596	vars	99	89.280	Scophthalmus_maximus
ENSNBRG00000020520	vars	100	92.567	ENSSDUG00000014177	vars	100	92.567	Seriola_dumerili
ENSNBRG00000020520	vars	100	92.332	ENSSLDG00000025316	vars	100	92.332	Seriola_lalandi_dorsalis
ENSNBRG00000020520	vars	100	91.144	ENSSPAG00000017068	vars	100	91.379	Stegastes_partitus
ENSNBRG00000020520	vars	100	64.053	ENSSSCG00000038950	VARS	100	64.214	Sus_scrofa
ENSNBRG00000020520	vars	82	81.125	ENSTRUG00000012307	vars	98	81.197	Takifugu_rubripes
ENSNBRG00000020520	vars	100	86.620	ENSTNIG00000008011	vars	100	86.620	Tetraodon_nigroviridis
ENSNBRG00000020520	vars	100	59.355	ENSTTRG00000014128	VARS	100	59.355	Tursiops_truncatus
ENSNBRG00000020520	vars	100	63.023	ENSUAMG00000010424	VARS	100	63.089	Ursus_americanus
ENSNBRG00000020520	vars	100	59.028	ENSUMAG00000013486	VARS	98	63.945	Ursus_maritimus
ENSNBRG00000020520	vars	100	64.389	ENSVVUG00000021323	VARS	100	64.389	Vulpes_vulpes
ENSNBRG00000020520	vars	100	64.043	ENSXETG00000024076	vars	100	64.000	Xenopus_tropicalis
ENSNBRG00000020520	vars	100	88.401	ENSXCOG00000019172	vars	100	88.401	Xiphophorus_couchianus
ENSNBRG00000020520	vars	100	90.909	ENSXMAG00000010927	vars	100	90.909	Xiphophorus_maculatus