EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSNBRG00000022069 (Gene tree)
Gene ID: 102784511
Gene Symbol: -
Alias: HUPF1|KIAA0221|NORF1|RENT1|pNORF1|smg-2
Full Name: regulator of nonsense transcripts 1-like
Gene Type: protein_coding
Species: Neolamprologus_brichardi
Status: putative
Strand: Minus strand
Length: 16327 bases
Position: chrJH422496.1:536386-552712
Accession: 102784511
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNBRP00000029025	UPF1_Zn_bind	PF09416.10	8.1e-75	1	1
ENSNBRP00000029009	UPF1_Zn_bind	PF09416.10	9.5e-75	1	1
ENSNBRP00000029025	ResIII	PF04851.15	2.6e-05	1	1
ENSNBRP00000029009	ResIII	PF04851.15	3.1e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNBRT00000029781	-	3066	-	ENSNBRP00000029025	1021 (aa)	-	-
ENSNBRT00000029764	-	8576	XM_006808363	ENSNBRP00000029009	1142 (aa)	XP_006808426	UPI0003EC11CE

Gene Model

Click here to download ENSNBRG00000022069's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSNBRG00000022069's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSNBRG00000022069	-	51	30.466	ENSNBRG00000014911	ighmbp2	58	30.645
ENSNBRG00000022069	-	100	90.388	ENSNBRG00000000670	upf1	100	88.014

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNBRG00000022069	-	100	93.878	ENSG00000005007	UPF1	100	89.329	Homo_sapiens
ENSNBRG00000022069	-	100	97.864	ENSAPOG00000010916	-	100	95.276	Acanthochromis_polyacanthus
ENSNBRG00000022069	-	100	92.166	ENSAPOG00000023773	upf1	100	89.712	Acanthochromis_polyacanthus
ENSNBRG00000022069	-	100	92.981	ENSAMEG00000011474	UPF1	100	89.628	Ailuropoda_melanoleuca
ENSNBRG00000022069	-	99	97.179	ENSACIG00000010985	-	100	97.179	Amphilophus_citrinellus
ENSNBRG00000022069	-	100	92.517	ENSACIG00000019949	upf1	100	89.842	Amphilophus_citrinellus
ENSNBRG00000022069	-	100	91.642	ENSAOCG00000018519	upf1	100	89.542	Amphiprion_ocellaris
ENSNBRG00000022069	-	100	97.961	ENSAOCG00000006352	-	100	96.184	Amphiprion_ocellaris
ENSNBRG00000022069	-	100	91.642	ENSAPEG00000016344	upf1	100	89.542	Amphiprion_percula
ENSNBRG00000022069	-	100	97.864	ENSAPEG00000006292	-	100	96.184	Amphiprion_percula
ENSNBRG00000022069	-	100	90.476	ENSATEG00000017867	upf1	100	88.574	Anabas_testudineus
ENSNBRG00000022069	-	100	97.573	ENSATEG00000016606	-	100	95.101	Anabas_testudineus
ENSNBRG00000022069	-	100	92.981	ENSAPLG00000009175	UPF1	100	91.252	Anas_platyrhynchos
ENSNBRG00000022069	-	100	91.538	ENSANAG00000024107	UPF1	94	91.538	Aotus_nancymaae
ENSNBRG00000022069	-	100	92.323	ENSACLG00000007181	upf1	100	89.755	Astatotilapia_calliptera
ENSNBRG00000022069	-	100	98.738	ENSACLG00000022630	-	100	96.322	Astatotilapia_calliptera
ENSNBRG00000022069	-	100	94.180	ENSAMXG00000042187	upf1	100	90.901	Astyanax_mexicanus
ENSNBRG00000022069	-	100	92.981	ENSBTAG00000020922	UPF1	100	89.646	Bos_taurus
ENSNBRG00000022069	-	97	50.245	WBGene00004880	smg-2	99	47.467	Caenorhabditis_elegans
ENSNBRG00000022069	-	100	92.885	ENSCJAG00000019627	UPF1	100	89.329	Callithrix_jacchus
ENSNBRG00000022069	-	100	92.981	ENSCAFG00000014578	UPF1	100	89.415	Canis_familiaris
ENSNBRG00000022069	-	100	93.975	ENSCAFG00020012347	UPF1	100	89.071	Canis_lupus_dingo
ENSNBRG00000022069	-	100	93.975	ENSCHIG00000011018	UPF1	100	89.301	Capra_hircus
ENSNBRG00000022069	-	100	92.692	ENSTSYG00000008877	UPF1	98	91.043	Carlito_syrichta
ENSNBRG00000022069	-	100	92.596	ENSCAPG00000005758	UPF1	94	92.596	Cavia_aperea
ENSNBRG00000022069	-	100	92.596	ENSCPOG00000025463	UPF1	100	90.114	Cavia_porcellus
ENSNBRG00000022069	-	100	93.878	ENSCCAG00000032175	UPF1	100	89.948	Cebus_capucinus
ENSNBRG00000022069	-	100	92.885	ENSCATG00000040306	UPF1	97	92.885	Cercocebus_atys
ENSNBRG00000022069	-	100	92.885	ENSCLAG00000004037	UPF1	99	92.885	Chinchilla_lanigera
ENSNBRG00000022069	-	100	93.878	ENSCSAG00000005276	UPF1	100	88.985	Chlorocebus_sabaeus
ENSNBRG00000022069	-	100	93.495	ENSCPBG00000012513	UPF1	100	89.014	Chrysemys_picta_bellii
ENSNBRG00000022069	-	74	81.641	ENSCING00000021399	-	99	74.860	Ciona_intestinalis
ENSNBRG00000022069	-	99	73.578	ENSCSAVG00000006533	-	99	70.711	Ciona_savignyi
ENSNBRG00000022069	-	100	92.885	ENSCANG00000029819	UPF1	96	92.885	Colobus_angolensis_palliatus
ENSNBRG00000022069	-	100	93.294	ENSCGRG00001021067	Upf1	100	88.850	Cricetulus_griseus_chok1gshd
ENSNBRG00000022069	-	100	92.308	ENSCGRG00000013480	Upf1	97	92.308	Cricetulus_griseus_crigri
ENSNBRG00000022069	-	100	97.087	ENSCSEG00000016159	-	100	94.226	Cynoglossus_semilaevis
ENSNBRG00000022069	-	100	87.003	ENSCSEG00000017239	upf1	100	84.642	Cynoglossus_semilaevis
ENSNBRG00000022069	-	100	97.184	ENSCVAG00000010561	upf1	100	94.488	Cyprinodon_variegatus
ENSNBRG00000022069	-	100	93.501	ENSDARG00000016302	upf1	100	90.989	Danio_rerio
ENSNBRG00000022069	-	100	90.394	ENSDORG00000009984	Upf1	94	90.394	Dipodomys_ordii
ENSNBRG00000022069	-	84	74.365	FBgn0030354	Upf1	82	67.717	Drosophila_melanogaster
ENSNBRG00000022069	-	51	88.973	ENSEBUG00000010069	upf1	96	81.298	Eptatretus_burgeri
ENSNBRG00000022069	-	100	93.878	ENSEASG00005006549	UPF1	100	89.215	Equus_asinus_asinus
ENSNBRG00000022069	-	100	93.878	ENSECAG00000010639	UPF1	100	89.215	Equus_caballus
ENSNBRG00000022069	-	100	94.300	ENSELUG00000012916	-	100	91.036	Esox_lucius
ENSNBRG00000022069	-	100	91.602	ENSELUG00000020917	upf1	100	88.763	Esox_lucius
ENSNBRG00000022069	-	100	92.981	ENSFCAG00000009757	UPF1	100	89.329	Felis_catus
ENSNBRG00000022069	-	100	93.611	ENSFALG00000009312	UPF1	95	93.611	Ficedula_albicollis
ENSNBRG00000022069	-	100	92.788	ENSFDAG00000014816	UPF1	99	92.788	Fukomys_damarensis
ENSNBRG00000022069	-	100	89.519	ENSFHEG00000006428	upf1	100	85.936	Fundulus_heteroclitus
ENSNBRG00000022069	-	91	98.185	ENSFHEG00000016276	-	96	98.185	Fundulus_heteroclitus
ENSNBRG00000022069	-	100	93.378	ENSGMOG00000007541	upf1	100	92.126	Gadus_morhua
ENSNBRG00000022069	-	100	93.975	ENSGALG00000003220	UPF1	100	88.966	Gallus_gallus
ENSNBRG00000022069	-	100	97.087	ENSGAFG00000004831	upf1	100	94.401	Gambusia_affinis
ENSNBRG00000022069	-	67	92.960	ENSGAFG00000015443	-	85	92.960	Gambusia_affinis
ENSNBRG00000022069	-	100	93.878	ENSGAGG00000022217	UPF1	100	89.661	Gopherus_agassizii
ENSNBRG00000022069	-	100	93.878	ENSGGOG00000002608	UPF1	97	93.878	Gorilla_gorilla
ENSNBRG00000022069	-	83	96.485	ENSHBUG00000014694	upf1	100	96.485	Haplochromis_burtoni
ENSNBRG00000022069	-	87	100.000	ENSHBUG00000008939	upf1	95	100.000	Haplochromis_burtoni
ENSNBRG00000022069	-	100	92.596	ENSHGLG00000010900	UPF1	100	89.071	Heterocephalus_glaber_female
ENSNBRG00000022069	-	100	91.058	ENSHGLG00100005904	UPF1	95	91.058	Heterocephalus_glaber_male
ENSNBRG00000022069	-	100	96.896	ENSHCOG00000008918	upf1	100	95.950	Hippocampus_comes
ENSNBRG00000022069	-	100	94.180	ENSIPUG00000005108	UPF1	100	90.901	Ictalurus_punctatus
ENSNBRG00000022069	-	100	93.878	ENSSTOG00000009196	UPF1	100	89.715	Ictidomys_tridecemlineatus
ENSNBRG00000022069	-	100	92.019	ENSJJAG00000023151	Upf1	100	89.091	Jaculus_jaculus
ENSNBRG00000022069	-	100	97.282	ENSKMAG00000004962	upf1	100	94.838	Kryptolebias_marmoratus
ENSNBRG00000022069	-	100	96.993	ENSLBEG00000027848	-	100	94.488	Labrus_bergylta
ENSNBRG00000022069	-	99	91.075	ENSLBEG00000014862	upf1	100	88.764	Labrus_bergylta
ENSNBRG00000022069	-	68	94.261	ENSLACG00000008482	UPF1	100	94.261	Latimeria_chalumnae
ENSNBRG00000022069	-	100	95.044	ENSLOCG00000002072	upf1	100	92.119	Lepisosteus_oculatus
ENSNBRG00000022069	-	100	92.308	ENSLAFG00000014963	UPF1	100	88.966	Loxodonta_africana
ENSNBRG00000022069	-	100	92.885	ENSMFAG00000037748	UPF1	100	89.948	Macaca_fascicularis
ENSNBRG00000022069	-	100	92.885	ENSMMUG00000023286	UPF1	100	89.715	Macaca_mulatta
ENSNBRG00000022069	-	100	92.885	ENSMNEG00000000046	UPF1	100	89.948	Macaca_nemestrina
ENSNBRG00000022069	-	100	92.885	ENSMLEG00000028404	UPF1	99	92.885	Mandrillus_leucophaeus
ENSNBRG00000022069	-	100	97.187	ENSMAMG00000006231	-	100	94.838	Mastacembelus_armatus
ENSNBRG00000022069	-	100	91.109	ENSMAMG00000006229	upf1	100	89.215	Mastacembelus_armatus
ENSNBRG00000022069	-	100	91.258	ENSMZEG00005003489	upf1	100	89.081	Maylandia_zebra
ENSNBRG00000022069	-	100	98.738	ENSMZEG00005016386	-	100	96.322	Maylandia_zebra
ENSNBRG00000022069	-	100	92.507	ENSMGAG00000004745	UPF1	99	92.507	Meleagris_gallopavo
ENSNBRG00000022069	-	100	92.308	ENSMAUG00000011398	Upf1	94	92.308	Mesocricetus_auratus
ENSNBRG00000022069	-	100	93.780	ENSMICG00000001659	UPF1	100	88.898	Microcebus_murinus
ENSNBRG00000022069	-	100	92.308	ENSMOCG00000005699	Upf1	100	89.283	Microtus_ochrogaster
ENSNBRG00000022069	-	100	91.934	ENSMMOG00000007881	upf1	100	89.239	Mola_mola
ENSNBRG00000022069	-	100	95.049	ENSMMOG00000007537	-	98	95.049	Mola_mola
ENSNBRG00000022069	-	100	93.780	ENSMODG00000003689	UPF1	100	89.099	Monodelphis_domestica
ENSNBRG00000022069	-	100	91.448	ENSMALG00000000144	upf1	100	89.142	Monopterus_albus
ENSNBRG00000022069	-	100	96.035	ENSMALG00000018100	-	100	93.287	Monopterus_albus
ENSNBRG00000022069	-	100	93.197	MGP_CAROLIEiJ_G0031142	Upf1	100	89.110	Mus_caroli
ENSNBRG00000022069	-	100	93.197	ENSMUSG00000058301	Upf1	100	89.110	Mus_musculus
ENSNBRG00000022069	-	100	93.197	MGP_PahariEiJ_G0021607	Upf1	100	89.110	Mus_pahari
ENSNBRG00000022069	-	100	93.197	MGP_SPRETEiJ_G0032260	Upf1	100	89.110	Mus_spretus
ENSNBRG00000022069	-	100	93.975	ENSMPUG00000015516	UPF1	100	89.071	Mustela_putorius_furo
ENSNBRG00000022069	-	100	93.780	ENSMLUG00000012122	UPF1	99	88.860	Myotis_lucifugus
ENSNBRG00000022069	-	100	92.115	ENSNGAG00000024107	Upf1	100	88.793	Nannospalax_galili
ENSNBRG00000022069	-	100	87.706	ENSNLEG00000006062	UPF1	98	87.706	Nomascus_leucogenys
ENSNBRG00000022069	-	77	94.286	ENSMEUG00000014146	-	80	94.286	Notamacropus_eugenii
ENSNBRG00000022069	-	100	87.147	ENSOPRG00000014018	UPF1	96	96.341	Ochotona_princeps
ENSNBRG00000022069	-	100	92.788	ENSODEG00000012426	UPF1	100	90.280	Octodon_degus
ENSNBRG00000022069	-	100	91.451	ENSONIG00000010452	upf1	100	89.255	Oreochromis_niloticus
ENSNBRG00000022069	-	100	98.447	ENSONIG00000012729	-	100	96.060	Oreochromis_niloticus
ENSNBRG00000022069	-	100	92.226	ENSOANG00000004568	UPF1	100	89.052	Ornithorhynchus_anatinus
ENSNBRG00000022069	-	100	96.505	ENSORLG00000008453	upf1	100	93.788	Oryzias_latipes
ENSNBRG00000022069	-	100	96.505	ENSORLG00020014758	upf1	100	93.706	Oryzias_latipes_hni
ENSNBRG00000022069	-	100	96.505	ENSORLG00015010165	upf1	100	93.706	Oryzias_latipes_hsok
ENSNBRG00000022069	-	100	96.699	ENSOMEG00000003665	upf1	100	94.051	Oryzias_melastigma
ENSNBRG00000022069	-	100	93.975	ENSOGAG00000012866	UPF1	100	89.071	Otolemur_garnettii
ENSNBRG00000022069	-	96	92.423	ENSOARG00000010739	UPF1	100	88.462	Ovis_aries
ENSNBRG00000022069	-	100	92.885	ENSPPAG00000043884	UPF1	95	92.885	Pan_paniscus
ENSNBRG00000022069	-	100	92.981	ENSPPRG00000023470	UPF1	100	89.329	Panthera_pardus
ENSNBRG00000022069	-	100	91.934	ENSPTIG00000010159	UPF1	98	91.934	Panthera_tigris_altaica
ENSNBRG00000022069	-	100	92.885	ENSPTRG00000010721	UPF1	100	89.948	Pan_troglodytes
ENSNBRG00000022069	-	100	92.885	ENSPANG00000008847	UPF1	100	89.948	Papio_anubis
ENSNBRG00000022069	-	91	94.338	ENSPKIG00000006069	upf1	95	92.352	Paramormyrops_kingsleyae
ENSNBRG00000022069	-	74	91.667	ENSPSIG00000009491	UPF1	100	93.211	Pelodiscus_sinensis
ENSNBRG00000022069	-	100	90.513	ENSPMGG00000017327	upf1	100	87.871	Periophthalmus_magnuspinnatus
ENSNBRG00000022069	-	100	92.308	ENSPEMG00000001085	Upf1	100	89.196	Peromyscus_maniculatus_bairdii
ENSNBRG00000022069	-	100	88.867	ENSPMAG00000001206	upf1	100	84.930	Petromyzon_marinus
ENSNBRG00000022069	-	100	93.780	ENSPCIG00000006156	UPF1	100	89.147	Phascolarctos_cinereus
ENSNBRG00000022069	-	100	97.184	ENSPLAG00000016232	-	100	94.488	Poecilia_latipinna
ENSNBRG00000022069	-	100	90.857	ENSPLAG00000018155	-	100	87.370	Poecilia_latipinna
ENSNBRG00000022069	-	100	97.090	ENSPMEG00000016319	-	100	94.576	Poecilia_mexicana
ENSNBRG00000022069	-	100	91.465	ENSPMEG00000011443	-	100	88.179	Poecilia_mexicana
ENSNBRG00000022069	-	100	91.627	ENSPREG00000009940	upf1	100	87.834	Poecilia_reticulata
ENSNBRG00000022069	-	100	96.893	ENSPREG00000011247	-	100	94.226	Poecilia_reticulata
ENSNBRG00000022069	-	100	87.788	ENSPPYG00000009752	UPF1	100	84.682	Pongo_abelii
ENSNBRG00000022069	-	76	98.653	ENSPCAG00000012962	UPF1	76	98.653	Procavia_capensis
ENSNBRG00000022069	-	100	92.885	ENSPCOG00000023813	UPF1	100	89.792	Propithecus_coquereli
ENSNBRG00000022069	-	69	100.000	ENSPVAG00000003183	UPF1	69	100.000	Pteropus_vampyrus
ENSNBRG00000022069	-	100	98.641	ENSPNYG00000016731	-	100	96.235	Pundamilia_nyererei
ENSNBRG00000022069	-	100	91.258	ENSPNYG00000003694	upf1	100	89.081	Pundamilia_nyererei
ENSNBRG00000022069	-	100	93.792	ENSPNAG00000025614	upf1	100	90.464	Pygocentrus_nattereri
ENSNBRG00000022069	-	100	93.197	ENSRNOG00000020134	Upf1	100	89.110	Rattus_norvegicus
ENSNBRG00000022069	-	100	90.481	ENSRBIG00000013894	UPF1	98	93.122	Rhinopithecus_bieti
ENSNBRG00000022069	-	100	92.885	ENSRROG00000040935	UPF1	98	93.122	Rhinopithecus_roxellana
ENSNBRG00000022069	-	77	57.822	YMR080C	NAM7	82	57.822	Saccharomyces_cerevisiae
ENSNBRG00000022069	-	100	92.885	ENSSBOG00000023632	UPF1	95	92.885	Saimiri_boliviensis_boliviensis
ENSNBRG00000022069	-	100	92.610	ENSSHAG00000010499	UPF1	99	92.610	Sarcophilus_harrisii
ENSNBRG00000022069	-	100	94.655	ENSSFOG00015021095	upf1	98	94.655	Scleropages_formosus
ENSNBRG00000022069	-	100	90.421	ENSSMAG00000005055	upf1	100	88.505	Scophthalmus_maximus
ENSNBRG00000022069	-	100	97.672	ENSSMAG00000021018	-	100	95.188	Scophthalmus_maximus
ENSNBRG00000022069	-	100	90.822	ENSSDUG00000013320	upf1	100	89.129	Seriola_dumerili
ENSNBRG00000022069	-	100	97.672	ENSSDUG00000009629	-	100	95.363	Seriola_dumerili
ENSNBRG00000022069	-	100	97.672	ENSSLDG00000006878	-	100	95.363	Seriola_lalandi_dorsalis
ENSNBRG00000022069	-	100	91.699	ENSSLDG00000020868	upf1	100	89.583	Seriola_lalandi_dorsalis
ENSNBRG00000022069	-	100	93.683	ENSSPUG00000010538	UPF1	100	89.419	Sphenodon_punctatus
ENSNBRG00000022069	-	100	89.922	ENSSPAG00000000003	upf1	100	87.391	Stegastes_partitus
ENSNBRG00000022069	-	100	97.767	ENSSPAG00000011521	-	100	95.101	Stegastes_partitus
ENSNBRG00000022069	-	100	93.878	ENSSSCG00000039301	UPF1	98	93.878	Sus_scrofa
ENSNBRG00000022069	-	81	88.208	ENSTGUG00000001057	UPF1	100	87.270	Taeniopygia_guttata
ENSNBRG00000022069	-	100	92.233	ENSTRUG00000000150	upf1	100	89.064	Takifugu_rubripes
ENSNBRG00000022069	-	100	96.117	ENSTRUG00000005131	-	100	93.263	Takifugu_rubripes
ENSNBRG00000022069	-	100	89.893	ENSTTRG00000011544	UPF1	100	85.677	Tursiops_truncatus
ENSNBRG00000022069	-	100	93.975	ENSUAMG00000007093	UPF1	100	88.985	Ursus_americanus
ENSNBRG00000022069	-	100	93.975	ENSUMAG00000006652	UPF1	99	93.795	Ursus_maritimus
ENSNBRG00000022069	-	100	93.975	ENSVVUG00000007797	UPF1	100	89.071	Vulpes_vulpes
ENSNBRG00000022069	-	100	79.291	ENSXETG00000013602	upf1	100	77.358	Xenopus_tropicalis
ENSNBRG00000022069	-	100	96.990	ENSXCOG00000005764	-	99	96.990	Xiphophorus_couchianus
ENSNBRG00000022069	-	96	91.028	ENSXCOG00000015275	-	96	87.964	Xiphophorus_couchianus
ENSNBRG00000022069	-	100	91.254	ENSXMAG00000001703	-	100	88.266	Xiphophorus_maculatus
ENSNBRG00000022069	-	100	96.896	ENSXMAG00000002540	-	100	94.401	Xiphophorus_maculatus