EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSNBRG00000022150 (Gene tree)
Gene ID: -
Gene Symbol: lsm4
Alias: zgc:73057|zgc:77848
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Neolamprologus_brichardi
Status: putative
Strand: Plus strand
Length: 3867 bases
Position: chrJH422496.1:565323-569189
Accession: ZDB-GENE-040426-1652
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNBRP00000029072	LSM	PF01423.22	1.2e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNBRT00000029828	-	489	-	ENSNBRP00000029072	162 (aa)	-	-

Gene Model

Click here to download ENSNBRG00000022150's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSNBRG00000022150's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSNBRG00000022150	lsm4	60	31.373	ENSNBRG00000012904	si:ch73-14h10.2	97	31.313

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNBRG00000022150	lsm4	54	98.851	ENSG00000130520	LSM4	97	74.627	Homo_sapiens
ENSNBRG00000022150	lsm4	67	98.148	ENSAPOG00000005643	lsm4	72	98.148	Acanthochromis_polyacanthus
ENSNBRG00000022150	lsm4	54	98.864	ENSAMEG00000011162	LSM4	68	96.970	Ailuropoda_melanoleuca
ENSNBRG00000022150	lsm4	67	98.148	ENSAOCG00000006414	lsm4	73	98.148	Amphiprion_ocellaris
ENSNBRG00000022150	lsm4	67	98.148	ENSAPEG00000006238	lsm4	72	98.148	Amphiprion_percula
ENSNBRG00000022150	lsm4	67	97.222	ENSATEG00000016559	lsm4	71	97.222	Anabas_testudineus
ENSNBRG00000022150	lsm4	54	98.851	ENSANAG00000034659	LSM4	71	96.939	Aotus_nancymaae
ENSNBRG00000022150	lsm4	67	100.000	ENSACLG00000022738	lsm4	73	100.000	Astatotilapia_calliptera
ENSNBRG00000022150	lsm4	67	96.330	ENSAMXG00000016932	lsm4	77	96.330	Astyanax_mexicanus
ENSNBRG00000022150	lsm4	54	98.864	ENSBTAG00000008578	LSM4	71	96.970	Bos_taurus
ENSNBRG00000022150	lsm4	52	75.000	WBGene00003078	lsm-4	85	65.385	Caenorhabditis_elegans
ENSNBRG00000022150	lsm4	54	98.851	ENSCJAG00000014171	LSM4	71	96.939	Callithrix_jacchus
ENSNBRG00000022150	lsm4	54	98.851	ENSCAFG00000014900	LSM4	64	96.939	Canis_familiaris
ENSNBRG00000022150	lsm4	54	98.851	ENSCAFG00020012137	LSM4	71	96.939	Canis_lupus_dingo
ENSNBRG00000022150	lsm4	56	95.604	ENSCHIG00000010928	LSM4	68	94.118	Capra_hircus
ENSNBRG00000022150	lsm4	54	97.701	ENSTSYG00000030906	LSM4	71	95.918	Carlito_syrichta
ENSNBRG00000022150	lsm4	54	97.701	ENSCAPG00000014140	LSM4	71	95.918	Cavia_aperea
ENSNBRG00000022150	lsm4	54	97.701	ENSCPOG00000024117	LSM4	71	95.918	Cavia_porcellus
ENSNBRG00000022150	lsm4	54	98.851	ENSCCAG00000036308	LSM4	71	96.939	Cebus_capucinus
ENSNBRG00000022150	lsm4	54	98.851	ENSCATG00000029311	LSM4	99	75.000	Cercocebus_atys
ENSNBRG00000022150	lsm4	54	98.851	ENSCLAG00000010828	LSM4	71	96.939	Chinchilla_lanigera
ENSNBRG00000022150	lsm4	54	98.851	ENSCSAG00000005370	LSM4	71	96.939	Chlorocebus_sabaeus
ENSNBRG00000022150	lsm4	54	100.000	ENSCPBG00000012925	LSM4	71	97.959	Chrysemys_picta_bellii
ENSNBRG00000022150	lsm4	52	92.941	ENSCING00000007519	-	77	85.714	Ciona_intestinalis
ENSNBRG00000022150	lsm4	52	92.941	ENSCSAVG00000008596	-	78	85.714	Ciona_savignyi
ENSNBRG00000022150	lsm4	54	98.851	ENSCANG00000043686	LSM4	99	72.857	Colobus_angolensis_palliatus
ENSNBRG00000022150	lsm4	54	95.402	ENSCGRG00001014436	Lsm4	70	93.878	Cricetulus_griseus_chok1gshd
ENSNBRG00000022150	lsm4	54	95.402	ENSCGRG00000009398	Lsm4	71	93.878	Cricetulus_griseus_crigri
ENSNBRG00000022150	lsm4	67	97.222	ENSCSEG00000016127	lsm4	76	97.222	Cynoglossus_semilaevis
ENSNBRG00000022150	lsm4	52	97.619	ENSCVAG00000021828	lsm4	64	97.619	Cyprinodon_variegatus
ENSNBRG00000022150	lsm4	67	96.296	ENSCVAG00000010601	lsm4	76	96.296	Cyprinodon_variegatus
ENSNBRG00000022150	lsm4	60	97.959	ENSDARG00000023852	lsm4	69	97.959	Danio_rerio
ENSNBRG00000022150	lsm4	54	97.701	ENSDORG00000024225	Lsm4	71	95.918	Dipodomys_ordii
ENSNBRG00000022150	lsm4	61	80.808	FBgn0032240	CG17768	58	86.517	Drosophila_melanogaster
ENSNBRG00000022150	lsm4	65	98.095	ENSELUG00000012821	lsm4	80	98.095	Esox_lucius
ENSNBRG00000022150	lsm4	54	98.851	ENSFCAG00000040580	LSM4	71	96.939	Felis_catus
ENSNBRG00000022150	lsm4	54	100.000	ENSFALG00000009478	LSM4	72	97.980	Ficedula_albicollis
ENSNBRG00000022150	lsm4	54	98.851	ENSFDAG00000010124	LSM4	71	96.939	Fukomys_damarensis
ENSNBRG00000022150	lsm4	67	95.495	ENSGMOG00000007729	lsm4	76	95.495	Gadus_morhua
ENSNBRG00000022150	lsm4	54	100.000	ENSGALG00000003385	LSM4	71	97.959	Gallus_gallus
ENSNBRG00000022150	lsm4	78	73.944	ENSGAFG00000004903	lsm4	64	96.429	Gambusia_affinis
ENSNBRG00000022150	lsm4	59	98.947	ENSGACG00000008140	lsm4	65	98.980	Gasterosteus_aculeatus
ENSNBRG00000022150	lsm4	54	100.000	ENSGAGG00000017812	LSM4	71	97.959	Gopherus_agassizii
ENSNBRG00000022150	lsm4	54	98.851	ENSGGOG00000012914	-	99	75.000	Gorilla_gorilla
ENSNBRG00000022150	lsm4	68	100.000	ENSHBUG00000008858	lsm4	62	100.000	Haplochromis_burtoni
ENSNBRG00000022150	lsm4	54	98.851	ENSHGLG00000006568	LSM4	71	96.939	Heterocephalus_glaber_female
ENSNBRG00000022150	lsm4	56	98.901	ENSHGLG00100007894	LSM4	98	98.901	Heterocephalus_glaber_male
ENSNBRG00000022150	lsm4	67	98.148	ENSHCOG00000008819	lsm4	76	98.148	Hippocampus_comes
ENSNBRG00000022150	lsm4	60	98.980	ENSIPUG00000005368	Lsm4	69	98.980	Ictalurus_punctatus
ENSNBRG00000022150	lsm4	54	98.851	ENSSTOG00000016494	LSM4	71	96.939	Ictidomys_tridecemlineatus
ENSNBRG00000022150	lsm4	54	96.552	ENSJJAG00000017420	Lsm4	71	94.898	Jaculus_jaculus
ENSNBRG00000022150	lsm4	67	96.296	ENSKMAG00000005073	lsm4	75	96.296	Kryptolebias_marmoratus
ENSNBRG00000022150	lsm4	67	98.148	ENSLBEG00000027930	lsm4	72	98.148	Labrus_bergylta
ENSNBRG00000022150	lsm4	54	100.000	ENSLACG00000015861	LSM4	70	97.959	Latimeria_chalumnae
ENSNBRG00000022150	lsm4	62	97.000	ENSLOCG00000002025	lsm4	70	97.959	Lepisosteus_oculatus
ENSNBRG00000022150	lsm4	54	97.727	ENSLAFG00000017459	LSM4	71	95.960	Loxodonta_africana
ENSNBRG00000022150	lsm4	54	98.851	ENSMFAG00000031194	LSM4	99	72.857	Macaca_fascicularis
ENSNBRG00000022150	lsm4	54	98.851	ENSMMUG00000004405	LSM4	71	96.939	Macaca_mulatta
ENSNBRG00000022150	lsm4	54	98.851	ENSMNEG00000042899	LSM4	99	72.857	Macaca_nemestrina
ENSNBRG00000022150	lsm4	54	98.851	ENSMLEG00000027948	LSM4	99	75.000	Mandrillus_leucophaeus
ENSNBRG00000022150	lsm4	67	98.148	ENSMAMG00000006190	lsm4	76	98.148	Mastacembelus_armatus
ENSNBRG00000022150	lsm4	67	100.000	ENSMZEG00005016420	lsm4	74	100.000	Maylandia_zebra
ENSNBRG00000022150	lsm4	54	100.000	ENSMGAG00000004976	LSM4	71	97.980	Meleagris_gallopavo
ENSNBRG00000022150	lsm4	60	95.918	ENSMICG00000000222	LSM4	71	95.918	Microcebus_murinus
ENSNBRG00000022150	lsm4	54	95.402	ENSMOCG00000020861	Lsm4	70	93.878	Microtus_ochrogaster
ENSNBRG00000022150	lsm4	58	95.745	ENSMODG00000015044	-	75	95.745	Monodelphis_domestica
ENSNBRG00000022150	lsm4	67	96.296	ENSMALG00000018159	lsm4	76	96.296	Monopterus_albus
ENSNBRG00000022150	lsm4	54	95.402	MGP_CAROLIEiJ_G0031158	Lsm4	70	93.878	Mus_caroli
ENSNBRG00000022150	lsm4	54	95.402	ENSMUSG00000031848	Lsm4	95	87.755	Mus_musculus
ENSNBRG00000022150	lsm4	54	95.402	MGP_PahariEiJ_G0021623	Lsm4	70	93.878	Mus_pahari
ENSNBRG00000022150	lsm4	54	95.402	MGP_SPRETEiJ_G0032276	Lsm4	70	93.878	Mus_spretus
ENSNBRG00000022150	lsm4	54	98.851	ENSMPUG00000015589	LSM4	71	96.939	Mustela_putorius_furo
ENSNBRG00000022150	lsm4	54	98.864	ENSMLUG00000004010	LSM4	71	96.970	Myotis_lucifugus
ENSNBRG00000022150	lsm4	54	95.402	ENSNGAG00000008644	Lsm4	71	93.878	Nannospalax_galili
ENSNBRG00000022150	lsm4	54	98.851	ENSODEG00000020549	-	71	96.939	Octodon_degus
ENSNBRG00000022150	lsm4	54	88.506	ENSODEG00000004519	-	71	86.735	Octodon_degus
ENSNBRG00000022150	lsm4	67	100.000	ENSONIG00000012724	lsm4	73	100.000	Oreochromis_niloticus
ENSNBRG00000022150	lsm4	54	94.565	ENSOANG00000007434	LSM4	89	93.204	Ornithorhynchus_anatinus
ENSNBRG00000022150	lsm4	67	97.222	ENSORLG00000008391	lsm4	75	97.222	Oryzias_latipes
ENSNBRG00000022150	lsm4	67	97.222	ENSORLG00020014829	lsm4	75	97.222	Oryzias_latipes_hni
ENSNBRG00000022150	lsm4	67	97.222	ENSORLG00015010205	lsm4	75	97.222	Oryzias_latipes_hsok
ENSNBRG00000022150	lsm4	67	97.222	ENSOMEG00000003606	lsm4	75	97.222	Oryzias_melastigma
ENSNBRG00000022150	lsm4	61	95.960	ENSOGAG00000027992	LSM4	68	95.960	Otolemur_garnettii
ENSNBRG00000022150	lsm4	54	98.851	ENSOARG00000012553	LSM4	68	96.939	Ovis_aries
ENSNBRG00000022150	lsm4	54	98.851	ENSPPAG00000044045	-	71	96.939	Pan_paniscus
ENSNBRG00000022150	lsm4	54	98.851	ENSPPRG00000018264	LSM4	71	96.939	Panthera_pardus
ENSNBRG00000022150	lsm4	54	98.851	ENSPTIG00000006306	LSM4	71	96.939	Panthera_tigris_altaica
ENSNBRG00000022150	lsm4	54	98.851	ENSPTRG00000031470	LSM4	71	96.939	Pan_troglodytes
ENSNBRG00000022150	lsm4	54	98.851	ENSPANG00000014399	LSM4	99	75.000	Papio_anubis
ENSNBRG00000022150	lsm4	67	95.413	ENSPKIG00000006154	lsm4	77	95.413	Paramormyrops_kingsleyae
ENSNBRG00000022150	lsm4	54	100.000	ENSPSIG00000012358	LSM4	72	97.959	Pelodiscus_sinensis
ENSNBRG00000022150	lsm4	54	95.402	ENSPEMG00000001358	Lsm4	70	93.878	Peromyscus_maniculatus_bairdii
ENSNBRG00000022150	lsm4	78	74.648	ENSPFOG00000000570	lsm4	55	95.146	Poecilia_formosa
ENSNBRG00000022150	lsm4	64	99.038	ENSPLAG00000016267	lsm4	69	100.000	Poecilia_latipinna
ENSNBRG00000022150	lsm4	67	98.148	ENSPMEG00000016378	lsm4	76	98.148	Poecilia_mexicana
ENSNBRG00000022150	lsm4	70	87.719	ENSPREG00000011290	lsm4	61	87.719	Poecilia_reticulata
ENSNBRG00000022150	lsm4	54	98.851	ENSPPYG00000009736	LSM4	71	96.939	Pongo_abelii
ENSNBRG00000022150	lsm4	60	95.918	ENSPCOG00000019837	LSM4	71	95.918	Propithecus_coquereli
ENSNBRG00000022150	lsm4	54	98.851	ENSPVAG00000015383	LSM4	71	96.939	Pteropus_vampyrus
ENSNBRG00000022150	lsm4	67	100.000	ENSPNYG00000016794	lsm4	74	100.000	Pundamilia_nyererei
ENSNBRG00000022150	lsm4	65	98.095	ENSPNAG00000016598	lsm4	78	98.095	Pygocentrus_nattereri
ENSNBRG00000022150	lsm4	54	95.402	ENSRNOG00000019572	Lsm4	70	93.878	Rattus_norvegicus
ENSNBRG00000022150	lsm4	54	98.851	ENSRBIG00000024717	LSM4	99	74.286	Rhinopithecus_bieti
ENSNBRG00000022150	lsm4	54	98.851	ENSRROG00000045706	LSM4	99	74.286	Rhinopithecus_roxellana
ENSNBRG00000022150	lsm4	51	40.217	YER112W	LSM4	51	39.583	Saccharomyces_cerevisiae
ENSNBRG00000022150	lsm4	67	96.296	ENSSHAG00000011559	LSM4	77	96.296	Sarcophilus_harrisii
ENSNBRG00000022150	lsm4	67	95.413	ENSSFOG00015021067	lsm4	77	95.413	Scleropages_formosus
ENSNBRG00000022150	lsm4	67	97.222	ENSSMAG00000021020	lsm4	72	97.222	Scophthalmus_maximus
ENSNBRG00000022150	lsm4	67	98.148	ENSSDUG00000009588	lsm4	65	98.148	Seriola_dumerili
ENSNBRG00000022150	lsm4	67	98.148	ENSSLDG00000006827	lsm4	64	98.148	Seriola_lalandi_dorsalis
ENSNBRG00000022150	lsm4	54	100.000	ENSSPUG00000010166	LSM4	64	97.980	Sphenodon_punctatus
ENSNBRG00000022150	lsm4	67	98.148	ENSSPAG00000011615	lsm4	72	98.148	Stegastes_partitus
ENSNBRG00000022150	lsm4	54	98.851	ENSSSCG00000034314	LSM4	71	96.939	Sus_scrofa
ENSNBRG00000022150	lsm4	75	75.912	ENSTRUG00000021737	lsm4	69	97.959	Takifugu_rubripes
ENSNBRG00000022150	lsm4	66	97.196	ENSTNIG00000010191	lsm4	74	97.196	Tetraodon_nigroviridis
ENSNBRG00000022150	lsm4	54	98.864	ENSUAMG00000000665	LSM4	81	96.939	Ursus_americanus
ENSNBRG00000022150	lsm4	54	98.851	ENSUMAG00000009013	LSM4	71	96.939	Ursus_maritimus
ENSNBRG00000022150	lsm4	54	97.727	ENSVVUG00000008136	LSM4	51	95.960	Vulpes_vulpes
ENSNBRG00000022150	lsm4	60	96.907	ENSXETG00000024933	lsm4	70	96.907	Xenopus_tropicalis
ENSNBRG00000022150	lsm4	80	72.222	ENSXMAG00000026672	lsm4	55	93.204	Xiphophorus_maculatus