EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSNBRG00000022545 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: HSRNASEB|RNPC1|SEB4D|dJ800J21.2|seb4B
Full Name: -
Gene Type: protein_coding
Species: Neolamprologus_brichardi
Status: putative
Strand: Minus strand
Length: 9043 bases
Position: chrJH422279.1:11731526-11740568
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNBRP00000029605	RRM_1	PF00076.22	2.9e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNBRT00000030364	-	2450	-	ENSNBRP00000029605	244 (aa)	-	UPI00022B1F9C

Gene Model

Click here to download ENSNBRG00000022545's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSNBRG00000022545's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSNBRG00000022545	-	95	59.184	ENSNBRG00000012347	rbm24a	100	60.408
ENSNBRG00000022545	-	63	70.625	ENSNBRG00000015853	rbm24b	100	60.569
ENSNBRG00000022545	-	100	64.542	ENSNBRG00000022685	rbm38	98	63.529

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNBRG00000022545	-	92	66.810	ENSG00000132819	RBM38	94	87.288	Homo_sapiens
ENSNBRG00000022545	-	100	64.567	ENSAPOG00000003301	rbm38	98	64.567	Acanthochromis_polyacanthus
ENSNBRG00000022545	-	100	91.803	ENSAPOG00000009939	-	100	91.803	Acanthochromis_polyacanthus
ENSNBRG00000022545	-	100	64.143	ENSACIG00000000010	rbm38	98	64.143	Amphilophus_citrinellus
ENSNBRG00000022545	-	100	97.951	ENSACIG00000012502	-	100	97.951	Amphilophus_citrinellus
ENSNBRG00000022545	-	100	64.567	ENSAOCG00000013497	-	98	64.567	Amphiprion_ocellaris
ENSNBRG00000022545	-	97	90.717	ENSAOCG00000012559	RBM38	100	90.717	Amphiprion_ocellaris
ENSNBRG00000022545	-	100	64.567	ENSAPEG00000013137	rbm38	98	64.567	Amphiprion_percula
ENSNBRG00000022545	-	100	90.574	ENSAPEG00000023581	-	100	90.574	Amphiprion_percula
ENSNBRG00000022545	-	100	63.636	ENSATEG00000016366	rbm38	98	63.636	Anabas_testudineus
ENSNBRG00000022545	-	100	93.443	ENSATEG00000016710	-	100	93.443	Anabas_testudineus
ENSNBRG00000022545	-	95	68.511	ENSACAG00000016238	RBM38	90	67.521	Anolis_carolinensis
ENSNBRG00000022545	-	92	67.672	ENSANAG00000031959	RBM38	78	94.681	Aotus_nancymaae
ENSNBRG00000022545	-	100	99.590	ENSACLG00000019514	-	100	99.590	Astatotilapia_calliptera
ENSNBRG00000022545	-	96	65.812	ENSAMXG00000038120	rbm38	97	65.812	Astyanax_mexicanus
ENSNBRG00000022545	-	100	79.098	ENSAMXG00000015601	-	100	79.098	Astyanax_mexicanus
ENSNBRG00000022545	-	92	66.234	ENSBTAG00000008105	RBM38	89	66.087	Bos_taurus
ENSNBRG00000022545	-	52	63.566	WBGene00006321	sup-12	63	78.947	Caenorhabditis_elegans
ENSNBRG00000022545	-	92	67.672	ENSCJAG00000019139	RBM38	78	94.681	Callithrix_jacchus
ENSNBRG00000022545	-	92	68.103	ENSCAFG00020021943	RBM38	89	68.103	Canis_lupus_dingo
ENSNBRG00000022545	-	92	65.801	ENSCHIG00000002609	RBM38	89	65.652	Capra_hircus
ENSNBRG00000022545	-	92	66.953	ENSCPOG00000012781	RBM38	89	66.810	Cavia_porcellus
ENSNBRG00000022545	-	92	67.672	ENSCCAG00000036872	RBM38	78	94.681	Cebus_capucinus
ENSNBRG00000022545	-	92	66.234	ENSCATG00000032133	RBM38	78	94.681	Cercocebus_atys
ENSNBRG00000022545	-	92	66.524	ENSCLAG00000005906	RBM38	92	65.948	Chinchilla_lanigera
ENSNBRG00000022545	-	92	66.234	ENSCSAG00000015503	RBM38	89	66.087	Chlorocebus_sabaeus
ENSNBRG00000022545	-	95	69.362	ENSCPBG00000024059	RBM38	100	67.949	Chrysemys_picta_bellii
ENSNBRG00000022545	-	60	62.179	ENSCING00000025102	-	66	62.179	Ciona_intestinalis
ENSNBRG00000022545	-	61	63.057	ENSCSAVG00000001132	-	57	62.987	Ciona_savignyi
ENSNBRG00000022545	-	95	50.638	ENSCANG00000030105	-	80	49.362	Colobus_angolensis_palliatus
ENSNBRG00000022545	-	92	64.224	ENSCGRG00001012928	Rbm38	89	64.069	Cricetulus_griseus_chok1gshd
ENSNBRG00000022545	-	82	59.804	ENSCSEG00000020943	rbm38	63	64.062	Cynoglossus_semilaevis
ENSNBRG00000022545	-	100	89.754	ENSCSEG00000004701	-	100	89.754	Cynoglossus_semilaevis
ENSNBRG00000022545	-	100	88.115	ENSCVAG00000005472	-	100	88.115	Cyprinodon_variegatus
ENSNBRG00000022545	-	99	57.358	ENSCVAG00000015952	rbm38	98	61.417	Cyprinodon_variegatus
ENSNBRG00000022545	-	99	70.782	ENSDARG00000058818	rbm38	100	70.782	Danio_rerio
ENSNBRG00000022545	-	92	66.376	ENSDNOG00000032004	RBM38	98	65.789	Dasypus_novemcinctus
ENSNBRG00000022545	-	92	66.379	ENSECAG00000007700	RBM38	89	65.801	Equus_caballus
ENSNBRG00000022545	-	92	64.807	ENSEEUG00000013489	RBM38	89	65.929	Erinaceus_europaeus
ENSNBRG00000022545	-	90	64.192	ENSELUG00000000585	-	98	63.755	Esox_lucius
ENSNBRG00000022545	-	100	81.124	ENSELUG00000005849	-	100	81.124	Esox_lucius
ENSNBRG00000022545	-	92	67.100	ENSFCAG00000042916	RBM38	84	87.500	Felis_catus
ENSNBRG00000022545	-	73	74.033	ENSFALG00000010805	RBM38	92	72.626	Ficedula_albicollis
ENSNBRG00000022545	-	100	61.417	ENSFHEG00000017748	rbm38	98	61.417	Fundulus_heteroclitus
ENSNBRG00000022545	-	100	83.197	ENSFHEG00000006160	-	100	84.677	Fundulus_heteroclitus
ENSNBRG00000022545	-	75	87.500	ENSGMOG00000016655	-	98	85.326	Gadus_morhua
ENSNBRG00000022545	-	95	65.957	ENSGALG00000026081	RBM38	100	67.094	Gallus_gallus
ENSNBRG00000022545	-	95	65.948	ENSGACG00000015224	rbm38	100	65.948	Gasterosteus_aculeatus
ENSNBRG00000022545	-	94	84.783	ENSGACG00000009873	-	100	84.783	Gasterosteus_aculeatus
ENSNBRG00000022545	-	95	69.787	ENSGAGG00000001187	RBM38	100	67.949	Gopherus_agassizii
ENSNBRG00000022545	-	100	99.590	ENSHBUG00000011778	-	100	99.590	Haplochromis_burtoni
ENSNBRG00000022545	-	100	64.143	ENSHBUG00000012058	rbm38	98	64.143	Haplochromis_burtoni
ENSNBRG00000022545	-	92	63.793	ENSHGLG00000015077	RBM38	89	65.948	Heterocephalus_glaber_female
ENSNBRG00000022545	-	80	56.122	ENSHCOG00000019040	rbm38	78	56.122	Hippocampus_comes
ENSNBRG00000022545	-	84	91.262	ENSHCOG00000005622	-	59	91.262	Hippocampus_comes
ENSNBRG00000022545	-	100	72.470	ENSIPUG00000019349	-	100	72.470	Ictalurus_punctatus
ENSNBRG00000022545	-	92	59.657	ENSKMAG00000012402	rbm38	98	59.657	Kryptolebias_marmoratus
ENSNBRG00000022545	-	100	63.095	ENSLBEG00000018878	rbm38	98	63.889	Labrus_bergylta
ENSNBRG00000022545	-	100	90.323	ENSLBEG00000016163	RBM38	100	90.323	Labrus_bergylta
ENSNBRG00000022545	-	100	75.000	ENSLOCG00000003456	rbm38	100	75.000	Lepisosteus_oculatus
ENSNBRG00000022545	-	92	66.234	ENSMFAG00000043808	RBM38	78	94.681	Macaca_fascicularis
ENSNBRG00000022545	-	92	66.234	ENSMMUG00000031391	RBM38	78	94.681	Macaca_mulatta
ENSNBRG00000022545	-	92	66.234	ENSMNEG00000034683	RBM38	78	94.681	Macaca_nemestrina
ENSNBRG00000022545	-	100	66.135	ENSMAMG00000024135	rbm38	98	64.940	Mastacembelus_armatus
ENSNBRG00000022545	-	100	90.984	ENSMAMG00000020499	RBM38	100	90.984	Mastacembelus_armatus
ENSNBRG00000022545	-	100	99.590	ENSMZEG00005000849	-	100	99.590	Maylandia_zebra
ENSNBRG00000022545	-	100	64.143	ENSMZEG00005026036	rbm38	98	64.143	Maylandia_zebra
ENSNBRG00000022545	-	92	65.948	ENSMAUG00000021211	Rbm38	89	65.368	Mesocricetus_auratus
ENSNBRG00000022545	-	92	67.811	ENSMICG00000038011	RBM38	98	67.241	Microcebus_murinus
ENSNBRG00000022545	-	92	65.517	ENSMOCG00000008715	Rbm38	94	62.963	Microtus_ochrogaster
ENSNBRG00000022545	-	100	92.623	ENSMMOG00000020051	-	100	92.623	Mola_mola
ENSNBRG00000022545	-	95	65.957	ENSMODG00000016458	RBM38	92	65.823	Monodelphis_domestica
ENSNBRG00000022545	-	77	96.296	ENSMALG00000004680	RBM38	72	96.296	Monopterus_albus
ENSNBRG00000022545	-	69	71.176	ENSMALG00000022327	rbm38	98	56.800	Monopterus_albus
ENSNBRG00000022545	-	92	63.203	MGP_CAROLIEiJ_G0024745	Rbm38	94	63.786	Mus_caroli
ENSNBRG00000022545	-	97	61.317	ENSMUSG00000027510	Rbm38	94	63.786	Mus_musculus
ENSNBRG00000022545	-	92	63.362	MGP_PahariEiJ_G0026186	Rbm38	94	63.934	Mus_pahari
ENSNBRG00000022545	-	92	63.203	MGP_SPRETEiJ_G0025665	Rbm38	94	63.786	Mus_spretus
ENSNBRG00000022545	-	72	76.374	ENSMPUG00000006518	RBM38	92	75.000	Mustela_putorius_furo
ENSNBRG00000022545	-	92	66.234	ENSMLUG00000011140	RBM38	98	65.217	Myotis_lucifugus
ENSNBRG00000022545	-	92	66.524	ENSODEG00000007980	RBM38	89	66.379	Octodon_degus
ENSNBRG00000022545	-	99	64.400	ENSONIG00000017073	rbm38	100	64.400	Oreochromis_niloticus
ENSNBRG00000022545	-	99	100.000	ENSONIG00000020324	-	100	100.000	Oreochromis_niloticus
ENSNBRG00000022545	-	95	67.234	ENSOANG00000009259	RBM38	83	66.239	Ornithorhynchus_anatinus
ENSNBRG00000022545	-	100	57.540	ENSORLG00000012154	rbm38	98	59.216	Oryzias_latipes
ENSNBRG00000022545	-	100	89.431	ENSORLG00000027180	-	100	90.650	Oryzias_latipes
ENSNBRG00000022545	-	100	89.431	ENSORLG00020020751	-	100	90.650	Oryzias_latipes_hni
ENSNBRG00000022545	-	100	59.216	ENSORLG00020017871	rbm38	98	59.216	Oryzias_latipes_hni
ENSNBRG00000022545	-	100	59.216	ENSORLG00015012606	rbm38	98	59.216	Oryzias_latipes_hsok
ENSNBRG00000022545	-	100	90.612	ENSORLG00015017040	-	100	91.429	Oryzias_latipes_hsok
ENSNBRG00000022545	-	100	90.984	ENSOMEG00000023912	-	100	90.984	Oryzias_melastigma
ENSNBRG00000022545	-	99	60.870	ENSOMEG00000006805	rbm38	98	60.870	Oryzias_melastigma
ENSNBRG00000022545	-	92	67.241	ENSOGAG00000029136	RBM38	88	67.100	Otolemur_garnettii
ENSNBRG00000022545	-	92	67.100	ENSPPRG00000009507	RBM38	84	87.500	Panthera_pardus
ENSNBRG00000022545	-	52	85.714	ENSPTRG00000045845	-	68	85.714	Pan_troglodytes
ENSNBRG00000022545	-	73	75.676	ENSPTRG00000013661	RBM38	82	90.099	Pan_troglodytes
ENSNBRG00000022545	-	92	66.234	ENSPANG00000020919	-	78	94.681	Papio_anubis
ENSNBRG00000022545	-	92	54.545	ENSPANG00000033127	-	91	53.913	Papio_anubis
ENSNBRG00000022545	-	100	73.279	ENSPKIG00000018122	-	95	91.892	Paramormyrops_kingsleyae
ENSNBRG00000022545	-	100	69.478	ENSPKIG00000025417	rbm38	100	70.683	Paramormyrops_kingsleyae
ENSNBRG00000022545	-	96	67.364	ENSPSIG00000011649	RBM38	94	65.546	Pelodiscus_sinensis
ENSNBRG00000022545	-	100	83.871	ENSPMGG00000017094	-	100	85.484	Periophthalmus_magnuspinnatus
ENSNBRG00000022545	-	99	61.905	ENSPMGG00000011343	rbm38	98	61.905	Periophthalmus_magnuspinnatus
ENSNBRG00000022545	-	95	65.966	ENSPCIG00000013648	RBM38	92	64.135	Phascolarctos_cinereus
ENSNBRG00000022545	-	100	58.203	ENSPFOG00000011658	rbm38	98	60.700	Poecilia_formosa
ENSNBRG00000022545	-	100	87.805	ENSPLAG00000002500	-	100	87.805	Poecilia_latipinna
ENSNBRG00000022545	-	100	58.755	ENSPLAG00000005218	rbm38	98	60.700	Poecilia_latipinna
ENSNBRG00000022545	-	100	58.203	ENSPMEG00000015770	rbm38	98	59.690	Poecilia_mexicana
ENSNBRG00000022545	-	100	58.203	ENSPREG00000007398	rbm38	98	60.700	Poecilia_reticulata
ENSNBRG00000022545	-	92	67.382	ENSPCOG00000026201	RBM38	77	94.681	Propithecus_coquereli
ENSNBRG00000022545	-	96	41.909	ENSPVAG00000006457	RBM38	66	85.484	Pteropus_vampyrus
ENSNBRG00000022545	-	100	99.590	ENSPNYG00000019727	-	100	99.590	Pundamilia_nyererei
ENSNBRG00000022545	-	100	63.745	ENSPNYG00000021373	rbm38	98	63.745	Pundamilia_nyererei
ENSNBRG00000022545	-	100	77.049	ENSPNAG00000015123	-	98	82.963	Pygocentrus_nattereri
ENSNBRG00000022545	-	96	71.308	ENSPNAG00000010596	rbm38	97	71.308	Pygocentrus_nattereri
ENSNBRG00000022545	-	97	64.344	ENSRNOG00000006420	Rbm38	94	64.198	Rattus_norvegicus
ENSNBRG00000022545	-	95	53.846	ENSRROG00000036388	-	89	52.991	Rhinopithecus_roxellana
ENSNBRG00000022545	-	92	67.811	ENSSBOG00000031053	RBM38	92	91.000	Saimiri_boliviensis_boliviensis
ENSNBRG00000022545	-	100	71.371	ENSSFOG00015004453	rbm38	100	74.089	Scleropages_formosus
ENSNBRG00000022545	-	100	92.213	ENSSDUG00000021082	RBM38	100	92.213	Seriola_dumerili
ENSNBRG00000022545	-	100	65.490	ENSSDUG00000022611	rbm38	98	65.490	Seriola_dumerili
ENSNBRG00000022545	-	100	65.490	ENSSLDG00000010845	rbm38	98	65.490	Seriola_lalandi_dorsalis
ENSNBRG00000022545	-	100	93.033	ENSSLDG00000011778	RBM38	100	93.033	Seriola_lalandi_dorsalis
ENSNBRG00000022545	-	100	63.922	ENSSPAG00000011113	rbm38	98	63.922	Stegastes_partitus
ENSNBRG00000022545	-	100	92.213	ENSSPAG00000020989	RBM38	100	92.213	Stegastes_partitus
ENSNBRG00000022545	-	92	66.234	ENSSSCG00000007504	RBM38	89	66.087	Sus_scrofa
ENSNBRG00000022545	-	100	88.571	ENSTRUG00000019869	-	100	88.571	Takifugu_rubripes
ENSNBRG00000022545	-	96	63.750	ENSTRUG00000024954	rbm38	94	65.833	Takifugu_rubripes
ENSNBRG00000022545	-	95	87.013	ENSTNIG00000007093	-	100	87.013	Tetraodon_nigroviridis
ENSNBRG00000022545	-	73	75.676	ENSUAMG00000019780	RBM38	89	67.672	Ursus_americanus
ENSNBRG00000022545	-	92	68.103	ENSVVUG00000017246	RBM38	89	68.103	Vulpes_vulpes
ENSNBRG00000022545	-	95	65.532	ENSXETG00000011268	rbm38	99	65.385	Xenopus_tropicalis
ENSNBRG00000022545	-	71	77.528	ENSXCOG00000017324	-	68	83.974	Xiphophorus_couchianus
ENSNBRG00000022545	-	100	59.684	ENSXMAG00000023662	rbm38	98	62.205	Xiphophorus_maculatus