EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSNBRG00000023000 (Gene tree)
Gene ID: 102779128
Gene Symbol: smn1
Alias: fa12d01|smn|wu:fa12d01
Full Name: survival motor neuron protein 1-like
Gene Type: protein_coding
Species: Neolamprologus_brichardi
Status: putative
Strand: Plus strand
Length: 6448 bases
Position: chrJH422279.1:1078077-1084524
Accession: 102779128
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNBRP00000030227	SMN	PF06003.12	2.5e-114	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNBRT00000030998	-	1008	XM_006784066	ENSNBRP00000030227	282 (aa)	XP_006784129	UPI0003AFB93B

Gene Model

Click here to download ENSNBRG00000023000's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSNBRG00000023000's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNBRG00000023000	smn1	94	53.069	ENSG00000172062	SMN1	92	53.846	Homo_sapiens
ENSNBRG00000023000	smn1	94	53.069	ENSG00000205571	SMN2	92	53.846	Homo_sapiens
ENSNBRG00000023000	smn1	100	84.452	ENSAPOG00000011324	smn1	100	84.452	Acanthochromis_polyacanthus
ENSNBRG00000023000	smn1	94	55.636	ENSAMEG00000003316	-	89	53.381	Ailuropoda_melanoleuca
ENSNBRG00000023000	smn1	60	86.982	ENSACIG00000007598	smn1	94	87.574	Amphilophus_citrinellus
ENSNBRG00000023000	smn1	93	86.641	ENSACIG00000019772	-	99	86.641	Amphilophus_citrinellus
ENSNBRG00000023000	smn1	100	84.452	ENSAOCG00000024444	smn1	100	84.452	Amphiprion_ocellaris
ENSNBRG00000023000	smn1	100	84.806	ENSAPEG00000016504	smn1	100	84.806	Amphiprion_percula
ENSNBRG00000023000	smn1	95	85.556	ENSATEG00000002182	smn1	82	85.556	Anabas_testudineus
ENSNBRG00000023000	smn1	69	48.039	ENSAPLG00000010912	-	96	46.231	Anas_platyrhynchos
ENSNBRG00000023000	smn1	98	53.169	ENSACAG00000010017	-	96	52.465	Anolis_carolinensis
ENSNBRG00000023000	smn1	96	51.399	ENSANAG00000032133	-	95	51.786	Aotus_nancymaae
ENSNBRG00000023000	smn1	99	94.245	ENSACLG00000007308	smn1	94	94.245	Astatotilapia_calliptera
ENSNBRG00000023000	smn1	100	65.724	ENSAMXG00000013884	smn1	100	66.901	Astyanax_mexicanus
ENSNBRG00000023000	smn1	94	53.333	ENSBTAG00000005743	SMN2	93	49.627	Bos_taurus
ENSNBRG00000023000	smn1	94	54.676	ENSCJAG00000016290	-	91	54.255	Callithrix_jacchus
ENSNBRG00000023000	smn1	94	53.791	ENSCAFG00000007812	SMN	92	53.455	Canis_familiaris
ENSNBRG00000023000	smn1	94	53.791	ENSCAFG00020019229	-	86	53.455	Canis_lupus_dingo
ENSNBRG00000023000	smn1	94	53.137	ENSCHIG00000015559	-	91	52.045	Capra_hircus
ENSNBRG00000023000	smn1	94	55.273	ENSTSYG00000012058	-	93	51.852	Carlito_syrichta
ENSNBRG00000023000	smn1	77	47.556	ENSCAPG00000011021	-	88	43.284	Cavia_aperea
ENSNBRG00000023000	smn1	94	53.261	ENSCPOG00000012328	-	92	50.730	Cavia_porcellus
ENSNBRG00000023000	smn1	94	53.137	ENSCPOG00000036973	-	91	50.000	Cavia_porcellus
ENSNBRG00000023000	smn1	94	51.852	ENSCCAG00000018127	-	91	53.929	Cebus_capucinus
ENSNBRG00000023000	smn1	94	55.596	ENSCATG00000037002	-	92	54.579	Cercocebus_atys
ENSNBRG00000023000	smn1	94	55.036	ENSCLAG00000000284	-	92	51.439	Chinchilla_lanigera
ENSNBRG00000023000	smn1	94	55.185	ENSCSAG00000015688	-	91	54.448	Chlorocebus_sabaeus
ENSNBRG00000023000	smn1	61	83.333	ENSCHOG00000007346	-	100	49.402	Choloepus_hoffmanni
ENSNBRG00000023000	smn1	96	54.610	ENSCPBG00000010968	-	97	53.788	Chrysemys_picta_bellii
ENSNBRG00000023000	smn1	94	56.000	ENSCANG00000038242	-	93	54.613	Colobus_angolensis_palliatus
ENSNBRG00000023000	smn1	91	52.222	ENSCANG00000033324	-	60	61.392	Colobus_angolensis_palliatus
ENSNBRG00000023000	smn1	94	53.731	ENSCGRG00001017959	-	92	49.638	Cricetulus_griseus_chok1gshd
ENSNBRG00000023000	smn1	94	53.731	ENSCGRG00000007698	Smn1	92	49.638	Cricetulus_griseus_crigri
ENSNBRG00000023000	smn1	98	67.832	ENSCSEG00000015227	smn1	100	66.316	Cynoglossus_semilaevis
ENSNBRG00000023000	smn1	100	80.634	ENSCVAG00000007498	smn1	100	80.634	Cyprinodon_variegatus
ENSNBRG00000023000	smn1	100	63.415	ENSDARG00000018494	smn1	100	61.888	Danio_rerio
ENSNBRG00000023000	smn1	82	51.037	ENSDNOG00000007283	-	97	49.378	Dasypus_novemcinctus
ENSNBRG00000023000	smn1	51	58.621	ENSDNOG00000045949	-	71	53.374	Dasypus_novemcinctus
ENSNBRG00000023000	smn1	93	45.018	ENSDORG00000007082	Smn1	90	43.411	Dipodomys_ordii
ENSNBRG00000023000	smn1	54	49.359	ENSETEG00000001406	-	89	45.833	Echinops_telfairi
ENSNBRG00000023000	smn1	96	39.590	ENSEBUG00000011902	smn1	96	38.983	Eptatretus_burgeri
ENSNBRG00000023000	smn1	89	47.490	ENSEASG00005018000	-	90	46.538	Equus_asinus_asinus
ENSNBRG00000023000	smn1	94	52.555	ENSECAG00000015215	-	92	51.825	Equus_caballus
ENSNBRG00000023000	smn1	88	53.462	ENSEEUG00000015777	-	100	47.328	Erinaceus_europaeus
ENSNBRG00000023000	smn1	100	67.376	ENSELUG00000018067	smn1	100	67.376	Esox_lucius
ENSNBRG00000023000	smn1	94	55.185	ENSFCAG00000028292	SMN	92	54.348	Felis_catus
ENSNBRG00000023000	smn1	95	58.182	ENSFALG00000012320	-	95	53.532	Ficedula_albicollis
ENSNBRG00000023000	smn1	94	50.362	ENSFDAG00000017683	-	92	44.599	Fukomys_damarensis
ENSNBRG00000023000	smn1	97	80.797	ENSFHEG00000018508	smn1	100	80.435	Fundulus_heteroclitus
ENSNBRG00000023000	smn1	100	65.724	ENSGMOG00000017279	smn1	98	66.078	Gadus_morhua
ENSNBRG00000023000	smn1	95	51.264	ENSGALG00000002430	SMN	97	50.588	Gallus_gallus
ENSNBRG00000023000	smn1	100	82.332	ENSGAFG00000009501	smn1	100	82.332	Gambusia_affinis
ENSNBRG00000023000	smn1	100	81.560	ENSGACG00000010584	smn1	97	79.787	Gasterosteus_aculeatus
ENSNBRG00000023000	smn1	96	55.235	ENSGAGG00000011374	-	95	54.122	Gopherus_agassizii
ENSNBRG00000023000	smn1	98	38.806	ENSGAGG00000013639	-	92	37.073	Gopherus_agassizii
ENSNBRG00000023000	smn1	55	64.557	ENSGGOG00000026704	-	74	64.557	Gorilla_gorilla
ENSNBRG00000023000	smn1	91	52.672	ENSGGOG00000003872	-	93	53.640	Gorilla_gorilla
ENSNBRG00000023000	smn1	100	98.227	ENSHBUG00000013987	smn1	100	98.227	Haplochromis_burtoni
ENSNBRG00000023000	smn1	94	48.410	ENSHGLG00000001905	-	94	45.520	Heterocephalus_glaber_female
ENSNBRG00000023000	smn1	94	51.095	ENSHGLG00000001018	-	92	48.561	Heterocephalus_glaber_female
ENSNBRG00000023000	smn1	94	51.095	ENSHGLG00100011252	-	92	48.561	Heterocephalus_glaber_male
ENSNBRG00000023000	smn1	92	48.375	ENSHGLG00100018676	-	96	45.421	Heterocephalus_glaber_male
ENSNBRG00000023000	smn1	94	76.604	ENSHCOG00000017136	smn1	89	76.226	Hippocampus_comes
ENSNBRG00000023000	smn1	100	65.734	ENSIPUG00000012580	smn1	89	62.238	Ictalurus_punctatus
ENSNBRG00000023000	smn1	91	55.303	ENSSTOG00000012288	-	93	55.682	Ictidomys_tridecemlineatus
ENSNBRG00000023000	smn1	59	47.904	ENSJJAG00000014853	-	91	45.699	Jaculus_jaculus
ENSNBRG00000023000	smn1	100	79.649	ENSKMAG00000007239	smn1	100	80.351	Kryptolebias_marmoratus
ENSNBRG00000023000	smn1	100	83.099	ENSLBEG00000022550	smn1	100	83.099	Labrus_bergylta
ENSNBRG00000023000	smn1	99	34.219	ENSLACG00000009808	-	95	35.932	Latimeria_chalumnae
ENSNBRG00000023000	smn1	100	52.613	ENSLOCG00000011339	smn1	100	55.944	Lepisosteus_oculatus
ENSNBRG00000023000	smn1	94	52.768	ENSLAFG00000003425	-	89	51.481	Loxodonta_africana
ENSNBRG00000023000	smn1	94	55.556	ENSMFAG00000031523	SMN1	95	52.920	Macaca_fascicularis
ENSNBRG00000023000	smn1	94	50.181	ENSMFAG00000008812	-	91	50.890	Macaca_fascicularis
ENSNBRG00000023000	smn1	94	55.556	ENSMMUG00000020214	SMN1	92	54.579	Macaca_mulatta
ENSNBRG00000023000	smn1	94	49.458	ENSMMUG00000030594	-	91	48.780	Macaca_mulatta
ENSNBRG00000023000	smn1	94	55.556	ENSMNEG00000035094	-	92	54.579	Macaca_nemestrina
ENSNBRG00000023000	smn1	76	42.291	ENSMNEG00000036423	-	81	41.176	Macaca_nemestrina
ENSNBRG00000023000	smn1	94	56.318	ENSMLEG00000041902	-	93	55.311	Mandrillus_leucophaeus
ENSNBRG00000023000	smn1	100	84.859	ENSMAMG00000011034	smn1	100	84.859	Mastacembelus_armatus
ENSNBRG00000023000	smn1	100	97.872	ENSMZEG00005013634	smn1	100	97.872	Maylandia_zebra
ENSNBRG00000023000	smn1	69	51.020	ENSMGAG00000008889	-	95	46.667	Meleagris_gallopavo
ENSNBRG00000023000	smn1	56	59.375	ENSMAUG00000010262	Smn1	92	48.913	Mesocricetus_auratus
ENSNBRG00000023000	smn1	55	63.291	ENSMICG00000034708	-	71	63.291	Microcebus_murinus
ENSNBRG00000023000	smn1	94	54.478	ENSMOCG00000017833	Smn1	92	50.000	Microtus_ochrogaster
ENSNBRG00000023000	smn1	96	69.597	ENSMMOG00000005504	smn1	98	69.963	Mola_mola
ENSNBRG00000023000	smn1	97	54.930	ENSMODG00000001436	-	95	50.000	Monodelphis_domestica
ENSNBRG00000023000	smn1	100	85.211	ENSMALG00000008025	smn1	100	85.211	Monopterus_albus
ENSNBRG00000023000	smn1	94	52.536	MGP_CAROLIEiJ_G0018836	Smn1	53	62.987	Mus_caroli
ENSNBRG00000023000	smn1	94	52.174	ENSMUSG00000021645	Smn1	53	62.338	Mus_musculus
ENSNBRG00000023000	smn1	94	52.727	MGP_PahariEiJ_G0015911	Smn1	92	50.558	Mus_pahari
ENSNBRG00000023000	smn1	94	53.986	MGP_SPRETEiJ_G0019718	Smn1	53	62.338	Mus_spretus
ENSNBRG00000023000	smn1	92	55.185	ENSMPUG00000014470	-	93	53.333	Mustela_putorius_furo
ENSNBRG00000023000	smn1	94	51.579	ENSMLUG00000010603	-	50	62.821	Myotis_lucifugus
ENSNBRG00000023000	smn1	94	53.114	ENSNGAG00000019833	Smn1	92	49.814	Nannospalax_galili
ENSNBRG00000023000	smn1	94	52.878	ENSNLEG00000004454	-	92	53.846	Nomascus_leucogenys
ENSNBRG00000023000	smn1	79	49.784	ENSMEUG00000011393	-	88	47.805	Notamacropus_eugenii
ENSNBRG00000023000	smn1	88	53.257	ENSOPRG00000002015	-	100	52.964	Ochotona_princeps
ENSNBRG00000023000	smn1	91	54.580	ENSODEG00000015976	-	91	53.358	Octodon_degus
ENSNBRG00000023000	smn1	100	98.582	ENSONIG00000011799	smn1	100	98.582	Oreochromis_niloticus
ENSNBRG00000023000	smn1	95	51.246	ENSOANG00000001626	-	95	52.574	Ornithorhynchus_anatinus
ENSNBRG00000023000	smn1	94	43.321	ENSOCUG00000025183	-	92	42.909	Oryctolagus_cuniculus
ENSNBRG00000023000	smn1	94	53.986	ENSOCUG00000026649	-	92	49.477	Oryctolagus_cuniculus
ENSNBRG00000023000	smn1	94	55.556	ENSOCUG00000017097	-	91	49.477	Oryctolagus_cuniculus
ENSNBRG00000023000	smn1	100	80.919	ENSORLG00000010552	smn1	100	80.919	Oryzias_latipes
ENSNBRG00000023000	smn1	100	74.648	ENSORLG00020007936	smn1	100	74.648	Oryzias_latipes_hni
ENSNBRG00000023000	smn1	100	80.565	ENSORLG00015022425	smn1	100	80.565	Oryzias_latipes_hsok
ENSNBRG00000023000	smn1	100	81.272	ENSOMEG00000007824	smn1	100	81.272	Oryzias_melastigma
ENSNBRG00000023000	smn1	91	47.619	ENSOGAG00000031414	-	92	46.468	Otolemur_garnettii
ENSNBRG00000023000	smn1	94	52.045	ENSOARG00000005425	-	56	58.065	Ovis_aries
ENSNBRG00000023000	smn1	94	53.069	ENSPPAG00000036640	-	92	53.846	Pan_paniscus
ENSNBRG00000023000	smn1	94	55.797	ENSPPRG00000005575	-	92	54.348	Panthera_pardus
ENSNBRG00000023000	smn1	94	55.185	ENSPTIG00000007745	-	92	54.152	Panthera_tigris_altaica
ENSNBRG00000023000	smn1	94	54.643	ENSPTRG00000016955	-	90	53.532	Pan_troglodytes
ENSNBRG00000023000	smn1	94	50.558	ENSPANG00000000253	-	91	51.957	Papio_anubis
ENSNBRG00000023000	smn1	94	55.556	ENSPANG00000013601	-	91	54.448	Papio_anubis
ENSNBRG00000023000	smn1	100	59.655	ENSPKIG00000011096	smn1	100	59.930	Paramormyrops_kingsleyae
ENSNBRG00000023000	smn1	92	53.704	ENSPSIG00000014787	-	86	54.212	Pelodiscus_sinensis
ENSNBRG00000023000	smn1	100	71.678	ENSPMGG00000012285	smn1	97	72.993	Periophthalmus_magnuspinnatus
ENSNBRG00000023000	smn1	97	55.282	ENSPCIG00000025764	-	96	51.761	Phascolarctos_cinereus
ENSNBRG00000023000	smn1	100	82.332	ENSPFOG00000007786	smn1	100	82.332	Poecilia_formosa
ENSNBRG00000023000	smn1	100	82.686	ENSPLAG00000012071	smn1	100	82.686	Poecilia_latipinna
ENSNBRG00000023000	smn1	100	82.332	ENSPMEG00000017085	smn1	100	82.332	Poecilia_mexicana
ENSNBRG00000023000	smn1	100	81.979	ENSPREG00000005824	smn1	100	81.979	Poecilia_reticulata
ENSNBRG00000023000	smn1	91	51.481	ENSPPYG00000015533	-	95	52.190	Pongo_abelii
ENSNBRG00000023000	smn1	59	76.923	ENSPPYG00000019189	-	74	50.345	Pongo_abelii
ENSNBRG00000023000	smn1	91	52.652	ENSPCAG00000004187	-	97	51.136	Procavia_capensis
ENSNBRG00000023000	smn1	63	53.591	ENSPCOG00000022307	-	65	60.417	Propithecus_coquereli
ENSNBRG00000023000	smn1	94	55.636	ENSPVAG00000005977	-	91	52.788	Pteropus_vampyrus
ENSNBRG00000023000	smn1	100	100.000	ENSPNYG00000014148	smn1	100	100.000	Pundamilia_nyererei
ENSNBRG00000023000	smn1	100	66.316	ENSPNAG00000014007	smn1	87	62.324	Pygocentrus_nattereri
ENSNBRG00000023000	smn1	94	53.455	ENSRNOG00000018067	Smn1	92	49.638	Rattus_norvegicus
ENSNBRG00000023000	smn1	94	55.185	ENSRBIG00000037052	-	91	54.448	Rhinopithecus_bieti
ENSNBRG00000023000	smn1	97	51.064	ENSRBIG00000036775	-	93	50.000	Rhinopithecus_bieti
ENSNBRG00000023000	smn1	94	50.183	ENSRROG00000031088	-	90	52.896	Rhinopithecus_roxellana
ENSNBRG00000023000	smn1	94	55.185	ENSRROG00000039399	-	92	54.579	Rhinopithecus_roxellana
ENSNBRG00000023000	smn1	61	55.367	ENSSBOG00000020112	-	52	61.333	Saimiri_boliviensis_boliviensis
ENSNBRG00000023000	smn1	94	56.204	ENSSBOG00000011665	-	90	54.275	Saimiri_boliviensis_boliviensis
ENSNBRG00000023000	smn1	96	55.160	ENSSHAG00000001499	-	97	50.741	Sarcophilus_harrisii
ENSNBRG00000023000	smn1	100	61.246	ENSSFOG00015015507	smn1	100	57.292	Scleropages_formosus
ENSNBRG00000023000	smn1	100	78.092	ENSSMAG00000007922	smn1	100	80.919	Scophthalmus_maximus
ENSNBRG00000023000	smn1	100	88.028	ENSSDUG00000018533	smn1	100	88.028	Seriola_dumerili
ENSNBRG00000023000	smn1	100	88.380	ENSSLDG00000021135	smn1	100	88.380	Seriola_lalandi_dorsalis
ENSNBRG00000023000	smn1	97	57.785	ENSSPUG00000000373	-	99	55.556	Sphenodon_punctatus
ENSNBRG00000023000	smn1	100	84.806	ENSSPAG00000004345	smn1	100	84.806	Stegastes_partitus
ENSNBRG00000023000	smn1	94	43.494	ENSSSCG00000029127	-	74	71.875	Sus_scrofa
ENSNBRG00000023000	smn1	94	55.072	ENSSSCG00000016970	-	91	54.348	Sus_scrofa
ENSNBRG00000023000	smn1	91	52.747	ENSTGUG00000001548	-	95	50.187	Taeniopygia_guttata
ENSNBRG00000023000	smn1	100	70.213	ENSTRUG00000000736	smn	100	73.498	Takifugu_rubripes
ENSNBRG00000023000	smn1	100	68.858	ENSTNIG00000009892	smn1	100	70.934	Tetraodon_nigroviridis
ENSNBRG00000023000	smn1	54	64.331	ENSTBEG00000002399	-	86	59.218	Tupaia_belangeri
ENSNBRG00000023000	smn1	54	64.744	ENSTTRG00000005080	-	91	56.985	Tursiops_truncatus
ENSNBRG00000023000	smn1	54	65.385	ENSUAMG00000024947	-	57	65.385	Ursus_americanus
ENSNBRG00000023000	smn1	94	56.364	ENSUMAG00000007842	-	69	54.909	Ursus_maritimus
ENSNBRG00000023000	smn1	91	50.388	ENSVPAG00000009887	-	61	86.957	Vicugna_pacos
ENSNBRG00000023000	smn1	94	53.791	ENSVVUG00000006934	-	92	53.455	Vulpes_vulpes
ENSNBRG00000023000	smn1	98	56.643	ENSXETG00000018189	smn2	95	50.853	Xenopus_tropicalis
ENSNBRG00000023000	smn1	87	34.866	ENSXETG00000004912	-	82	59.322	Xenopus_tropicalis
ENSNBRG00000023000	smn1	100	81.272	ENSXMAG00000001521	smn1	100	81.272	Xiphophorus_maculatus