EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSNBRG00000023393 (Gene tree)
Gene ID: 102788549
Gene Symbol: trub1
Alias: zgc:195155
Full Name: probable tRNA pseudouridine synthase 1-like
Gene Type: protein_coding
Species: Neolamprologus_brichardi
Status: putative
Strand: Plus strand
Length: 12681 bases
Position: chrJH422354.1:970616-983296
Accession: 102788549
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNBRP00000030785	TruB_N	PF01509.18	1.9e-46	1	1
ENSNBRP00000030787	TruB_N	PF01509.18	2.4e-34	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNBRT00000031569	-	843	XM_006801641	ENSNBRP00000030785	280 (aa)	XP_006801704	-
ENSNBRT00000031571	-	744	-	ENSNBRP00000030787	247 (aa)	-	-
ENSNBRT00000031572	-	282	-	ENSNBRP00000030788	93 (aa)	-	-

Gene Model

Click here to download ENSNBRG00000023393's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSNBRG00000023393's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSNBRG00000023393	trub1	72	30.939	ENSNBRG00000016294	trub2	54	30.939

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNBRG00000023393	trub1	88	68.293	ENSG00000165832	TRUB1	70	68.293	Homo_sapiens
ENSNBRG00000023393	trub1	88	92.653	ENSAPOG00000020565	trub1	92	92.490	Acanthochromis_polyacanthus
ENSNBRG00000023393	trub1	88	68.145	ENSAMEG00000014931	TRUB1	70	68.145	Ailuropoda_melanoleuca
ENSNBRG00000023393	trub1	93	90.870	ENSACIG00000003060	trub1	85	90.870	Amphilophus_citrinellus
ENSNBRG00000023393	trub1	88	91.429	ENSAOCG00000017188	trub1	92	91.304	Amphiprion_ocellaris
ENSNBRG00000023393	trub1	89	91.600	ENSAPEG00000015209	trub1	92	91.700	Amphiprion_percula
ENSNBRG00000023393	trub1	88	88.980	ENSATEG00000023291	trub1	88	88.980	Anabas_testudineus
ENSNBRG00000023393	trub1	94	65.672	ENSAPLG00000006808	TRUB1	96	65.672	Anas_platyrhynchos
ENSNBRG00000023393	trub1	88	67.347	ENSACAG00000009282	TRUB1	88	67.347	Anolis_carolinensis
ENSNBRG00000023393	trub1	88	68.293	ENSANAG00000022870	TRUB1	70	68.293	Aotus_nancymaae
ENSNBRG00000023393	trub1	94	96.198	ENSACLG00000000823	trub1	94	96.198	Astatotilapia_calliptera
ENSNBRG00000023393	trub1	96	72.222	ENSAMXG00000015845	trub1	90	72.222	Astyanax_mexicanus
ENSNBRG00000023393	trub1	88	69.106	ENSBTAG00000012955	TRUB1	70	69.106	Bos_taurus
ENSNBRG00000023393	trub1	88	68.293	ENSCJAG00000047815	TRUB1	70	68.293	Callithrix_jacchus
ENSNBRG00000023393	trub1	88	68.699	ENSCAFG00000011688	TRUB1	70	68.699	Canis_familiaris
ENSNBRG00000023393	trub1	88	68.699	ENSCAFG00020013237	TRUB1	70	68.699	Canis_lupus_dingo
ENSNBRG00000023393	trub1	88	68.699	ENSCHIG00000020884	TRUB1	74	68.699	Capra_hircus
ENSNBRG00000023393	trub1	88	67.480	ENSTSYG00000000446	TRUB1	70	67.480	Carlito_syrichta
ENSNBRG00000023393	trub1	76	61.792	ENSCAPG00000017088	TRUB1	82	61.792	Cavia_aperea
ENSNBRG00000023393	trub1	66	63.978	ENSCPOG00000030129	-	72	63.978	Cavia_porcellus
ENSNBRG00000023393	trub1	65	65.027	ENSCPOG00000040236	-	75	65.027	Cavia_porcellus
ENSNBRG00000023393	trub1	88	68.293	ENSCCAG00000028842	TRUB1	70	68.293	Cebus_capucinus
ENSNBRG00000023393	trub1	88	68.293	ENSCATG00000033431	TRUB1	70	68.293	Cercocebus_atys
ENSNBRG00000023393	trub1	65	64.481	ENSCLAG00000008664	TRUB1	75	64.481	Chinchilla_lanigera
ENSNBRG00000023393	trub1	88	68.293	ENSCSAG00000004891	TRUB1	70	68.293	Chlorocebus_sabaeus
ENSNBRG00000023393	trub1	86	60.744	ENSCHOG00000011931	TRUB1	70	60.744	Choloepus_hoffmanni
ENSNBRG00000023393	trub1	90	70.120	ENSCPBG00000003051	TRUB1	87	70.120	Chrysemys_picta_bellii
ENSNBRG00000023393	trub1	88	68.293	ENSCANG00000029445	TRUB1	70	68.293	Colobus_angolensis_palliatus
ENSNBRG00000023393	trub1	76	69.014	ENSCGRG00001016772	-	71	68.837	Cricetulus_griseus_chok1gshd
ENSNBRG00000023393	trub1	85	60.251	ENSCGRG00001010322	-	69	57.588	Cricetulus_griseus_chok1gshd
ENSNBRG00000023393	trub1	85	68.201	ENSCGRG00000010806	Trub1	75	67.073	Cricetulus_griseus_crigri
ENSNBRG00000023393	trub1	90	79.447	ENSCSEG00000011261	trub1	82	79.447	Cynoglossus_semilaevis
ENSNBRG00000023393	trub1	90	82.072	ENSCVAG00000008791	trub1	77	82.072	Cyprinodon_variegatus
ENSNBRG00000023393	trub1	91	73.828	ENSDARG00000053805	trub1	99	85.294	Danio_rerio
ENSNBRG00000023393	trub1	88	66.260	ENSDNOG00000001069	TRUB1	70	66.260	Dasypus_novemcinctus
ENSNBRG00000023393	trub1	85	68.201	ENSDORG00000010431	Trub1	71	67.073	Dipodomys_ordii
ENSNBRG00000023393	trub1	64	65.116	ENSETEG00000009183	TRUB1	51	65.116	Echinops_telfairi
ENSNBRG00000023393	trub1	88	67.886	ENSEASG00005014739	TRUB1	70	67.886	Equus_asinus_asinus
ENSNBRG00000023393	trub1	88	67.886	ENSECAG00000007177	TRUB1	70	67.886	Equus_caballus
ENSNBRG00000023393	trub1	88	60.163	ENSEEUG00000013993	TRUB1	69	60.163	Erinaceus_europaeus
ENSNBRG00000023393	trub1	92	79.767	ENSELUG00000000502	trub1	90	79.767	Esox_lucius
ENSNBRG00000023393	trub1	88	68.699	ENSFCAG00000031927	TRUB1	70	68.699	Felis_catus
ENSNBRG00000023393	trub1	77	69.907	ENSFALG00000002232	TRUB1	83	69.907	Ficedula_albicollis
ENSNBRG00000023393	trub1	65	65.574	ENSFDAG00000008140	TRUB1	75	65.574	Fukomys_damarensis
ENSNBRG00000023393	trub1	91	83.984	ENSFHEG00000004016	trub1	88	83.984	Fundulus_heteroclitus
ENSNBRG00000023393	trub1	94	65.414	ENSGALG00000009091	TRUB1	87	68.016	Gallus_gallus
ENSNBRG00000023393	trub1	86	84.362	ENSGAFG00000009193	trub1	85	83.128	Gambusia_affinis
ENSNBRG00000023393	trub1	70	90.306	ENSGACG00000015387	trub1	96	90.306	Gasterosteus_aculeatus
ENSNBRG00000023393	trub1	90	69.444	ENSGAGG00000009758	TRUB1	70	71.429	Gopherus_agassizii
ENSNBRG00000023393	trub1	88	68.293	ENSGGOG00000004583	TRUB1	70	68.293	Gorilla_gorilla
ENSNBRG00000023393	trub1	94	95.817	ENSHBUG00000016787	trub1	94	95.817	Haplochromis_burtoni
ENSNBRG00000023393	trub1	88	67.073	ENSHGLG00000015314	TRUB1	70	67.073	Heterocephalus_glaber_female
ENSNBRG00000023393	trub1	65	65.027	ENSHGLG00100009183	TRUB1	77	65.027	Heterocephalus_glaber_male
ENSNBRG00000023393	trub1	90	86.561	ENSHCOG00000017877	trub1	92	86.561	Hippocampus_comes
ENSNBRG00000023393	trub1	91	73.828	ENSIPUG00000017559	trub1	90	73.828	Ictalurus_punctatus
ENSNBRG00000023393	trub1	90	66.798	ENSSTOG00000003641	TRUB1	76	66.798	Ictidomys_tridecemlineatus
ENSNBRG00000023393	trub1	88	67.073	ENSJJAG00000011800	Trub1	72	67.073	Jaculus_jaculus
ENSNBRG00000023393	trub1	91	86.220	ENSKMAG00000006232	trub1	91	86.220	Kryptolebias_marmoratus
ENSNBRG00000023393	trub1	90	89.328	ENSLBEG00000026722	trub1	88	89.328	Labrus_bergylta
ENSNBRG00000023393	trub1	88	72.874	ENSLACG00000014885	TRUB1	83	72.874	Latimeria_chalumnae
ENSNBRG00000023393	trub1	91	75.591	ENSLOCG00000012979	trub1	86	75.591	Lepisosteus_oculatus
ENSNBRG00000023393	trub1	88	67.886	ENSLAFG00000015452	TRUB1	70	67.886	Loxodonta_africana
ENSNBRG00000023393	trub1	88	68.293	ENSMFAG00000031767	TRUB1	70	68.293	Macaca_fascicularis
ENSNBRG00000023393	trub1	88	68.293	ENSMMUG00000001902	TRUB1	70	68.293	Macaca_mulatta
ENSNBRG00000023393	trub1	88	63.008	ENSMNEG00000044646	TRUB1	69	63.415	Macaca_nemestrina
ENSNBRG00000023393	trub1	88	68.293	ENSMLEG00000042655	TRUB1	70	68.293	Mandrillus_leucophaeus
ENSNBRG00000023393	trub1	94	95.817	ENSMZEG00005024095	trub1	94	95.817	Maylandia_zebra
ENSNBRG00000023393	trub1	88	68.826	ENSMGAG00000011135	TRUB1	85	68.826	Meleagris_gallopavo
ENSNBRG00000023393	trub1	85	66.109	ENSMAUG00000011101	Trub1	72	65.041	Mesocricetus_auratus
ENSNBRG00000023393	trub1	88	67.886	ENSMICG00000016324	TRUB1	70	67.886	Microcebus_murinus
ENSNBRG00000023393	trub1	85	67.647	ENSMOCG00000017759	Trub1	74	66.531	Microtus_ochrogaster
ENSNBRG00000023393	trub1	87	69.262	ENSMODG00000009676	TRUB1	70	66.667	Monodelphis_domestica
ENSNBRG00000023393	trub1	86	67.355	MGP_CAROLIEiJ_G0023100	Trub1	76	65.775	Mus_caroli
ENSNBRG00000023393	trub1	86	66.529	ENSMUSG00000025086	Trub1	76	64.706	Mus_musculus
ENSNBRG00000023393	trub1	88	65.854	MGP_PahariEiJ_G0014588	Trub1	73	65.854	Mus_pahari
ENSNBRG00000023393	trub1	86	66.529	MGP_SPRETEiJ_G0024021	Trub1	76	64.706	Mus_spretus
ENSNBRG00000023393	trub1	88	68.699	ENSMPUG00000003556	TRUB1	70	68.699	Mustela_putorius_furo
ENSNBRG00000023393	trub1	88	67.480	ENSMLUG00000017686	TRUB1	72	67.480	Myotis_lucifugus
ENSNBRG00000023393	trub1	88	67.480	ENSNGAG00000018682	Trub1	71	67.480	Nannospalax_galili
ENSNBRG00000023393	trub1	88	68.293	ENSNLEG00000016345	TRUB1	70	68.293	Nomascus_leucogenys
ENSNBRG00000023393	trub1	72	69.652	ENSMEUG00000006603	TRUB1	79	66.509	Notamacropus_eugenii
ENSNBRG00000023393	trub1	88	67.886	ENSOPRG00000009371	TRUB1	72	67.886	Ochotona_princeps
ENSNBRG00000023393	trub1	91	65.098	ENSODEG00000010854	TRUB1	73	65.098	Octodon_degus
ENSNBRG00000023393	trub1	94	95.437	ENSONIG00000007249	trub1	95	95.437	Oreochromis_niloticus
ENSNBRG00000023393	trub1	88	68.421	ENSOANG00000001556	TRUB1	82	68.421	Ornithorhynchus_anatinus
ENSNBRG00000023393	trub1	88	67.480	ENSOCUG00000009456	TRUB1	71	67.480	Oryctolagus_cuniculus
ENSNBRG00000023393	trub1	90	84.524	ENSORLG00000029719	trub1	91	84.314	Oryzias_latipes
ENSNBRG00000023393	trub1	90	84.524	ENSORLG00020016767	trub1	90	84.314	Oryzias_latipes_hni
ENSNBRG00000023393	trub1	90	83.730	ENSORLG00015014728	trub1	91	83.529	Oryzias_latipes_hsok
ENSNBRG00000023393	trub1	88	85.020	ENSOMEG00000014556	trub1	87	85.020	Oryzias_melastigma
ENSNBRG00000023393	trub1	88	68.293	ENSOGAG00000015895	TRUB1	70	68.293	Otolemur_garnettii
ENSNBRG00000023393	trub1	88	67.194	ENSOARG00000015591	TRUB1	72	67.194	Ovis_aries
ENSNBRG00000023393	trub1	88	68.293	ENSPPAG00000043645	TRUB1	70	68.293	Pan_paniscus
ENSNBRG00000023393	trub1	88	68.293	ENSPPRG00000007096	TRUB1	70	68.293	Panthera_pardus
ENSNBRG00000023393	trub1	88	68.293	ENSPTIG00000006378	TRUB1	70	68.293	Panthera_tigris_altaica
ENSNBRG00000023393	trub1	88	68.293	ENSPTRG00000002964	TRUB1	70	68.293	Pan_troglodytes
ENSNBRG00000023393	trub1	88	68.293	ENSPANG00000020712	TRUB1	70	68.293	Papio_anubis
ENSNBRG00000023393	trub1	68	80.952	ENSPKIG00000003852	trub1	72	80.952	Paramormyrops_kingsleyae
ENSNBRG00000023393	trub1	89	71.084	ENSPSIG00000012877	TRUB1	86	71.084	Pelodiscus_sinensis
ENSNBRG00000023393	trub1	93	78.764	ENSPMGG00000000075	trub1	93	79.070	Periophthalmus_magnuspinnatus
ENSNBRG00000023393	trub1	88	68.293	ENSPEMG00000011156	Trub1	72	68.293	Peromyscus_maniculatus_bairdii
ENSNBRG00000023393	trub1	87	69.262	ENSPCIG00000009729	TRUB1	69	67.059	Phascolarctos_cinereus
ENSNBRG00000023393	trub1	91	83.137	ENSPFOG00000009950	trub1	93	83.137	Poecilia_formosa
ENSNBRG00000023393	trub1	91	82.745	ENSPLAG00000013855	trub1	89	82.745	Poecilia_latipinna
ENSNBRG00000023393	trub1	91	83.137	ENSPMEG00000009064	trub1	92	83.137	Poecilia_mexicana
ENSNBRG00000023393	trub1	91	82.745	ENSPREG00000003343	trub1	92	82.745	Poecilia_reticulata
ENSNBRG00000023393	trub1	88	67.886	ENSPPYG00000002676	TRUB1	70	67.886	Pongo_abelii
ENSNBRG00000023393	trub1	88	61.789	ENSPCAG00000008427	TRUB1	70	61.789	Procavia_capensis
ENSNBRG00000023393	trub1	88	62.602	ENSPCOG00000024360	TRUB1	69	61.789	Propithecus_coquereli
ENSNBRG00000023393	trub1	72	68.317	ENSPVAG00000007575	TRUB1	77	68.317	Pteropus_vampyrus
ENSNBRG00000023393	trub1	94	96.198	ENSPNYG00000018614	trub1	94	96.198	Pundamilia_nyererei
ENSNBRG00000023393	trub1	90	75.785	ENSPNAG00000006881	trub1	83	75.785	Pygocentrus_nattereri
ENSNBRG00000023393	trub1	88	65.447	ENSRNOG00000017321	Trub1	72	65.447	Rattus_norvegicus
ENSNBRG00000023393	trub1	88	59.274	ENSRBIG00000033423	TRUB1	68	59.274	Rhinopithecus_bieti
ENSNBRG00000023393	trub1	88	68.293	ENSRROG00000033902	TRUB1	70	68.293	Rhinopithecus_roxellana
ENSNBRG00000023393	trub1	88	68.293	ENSSBOG00000024237	TRUB1	70	68.293	Saimiri_boliviensis_boliviensis
ENSNBRG00000023393	trub1	76	70.233	ENSSHAG00000009346	TRUB1	72	70.233	Sarcophilus_harrisii
ENSNBRG00000023393	trub1	91	78.346	ENSSFOG00015022124	trub1	87	78.346	Scleropages_formosus
ENSNBRG00000023393	trub1	90	90.909	ENSSMAG00000001020	trub1	91	90.234	Scophthalmus_maximus
ENSNBRG00000023393	trub1	88	88.571	ENSSDUG00000016414	trub1	92	87.843	Seriola_dumerili
ENSNBRG00000023393	trub1	88	88.980	ENSSLDG00000015486	trub1	92	88.235	Seriola_lalandi_dorsalis
ENSNBRG00000023393	trub1	90	69.048	ENSSPUG00000001642	TRUB1	87	69.048	Sphenodon_punctatus
ENSNBRG00000023393	trub1	90	90.514	ENSSPAG00000001217	trub1	91	90.514	Stegastes_partitus
ENSNBRG00000023393	trub1	88	67.886	ENSSSCG00000010653	TRUB1	72	67.886	Sus_scrofa
ENSNBRG00000023393	trub1	88	69.388	ENSTGUG00000010971	TRUB1	87	69.388	Taeniopygia_guttata
ENSNBRG00000023393	trub1	76	58.019	ENSTBEG00000002880	TRUB1	83	58.019	Tupaia_belangeri
ENSNBRG00000023393	trub1	72	67.822	ENSTTRG00000005767	TRUB1	77	67.822	Tursiops_truncatus
ENSNBRG00000023393	trub1	88	68.699	ENSUAMG00000024876	TRUB1	70	68.699	Ursus_americanus
ENSNBRG00000023393	trub1	88	68.699	ENSUMAG00000002411	TRUB1	73	68.699	Ursus_maritimus
ENSNBRG00000023393	trub1	88	68.699	ENSVPAG00000005507	TRUB1	70	68.699	Vicugna_pacos
ENSNBRG00000023393	trub1	88	68.699	ENSVVUG00000010085	TRUB1	59	68.699	Vulpes_vulpes
ENSNBRG00000023393	trub1	88	67.755	ENSXETG00000023828	trub1	88	67.755	Xenopus_tropicalis
ENSNBRG00000023393	trub1	86	85.124	ENSXCOG00000017847	trub1	86	85.124	Xiphophorus_couchianus
ENSNBRG00000023393	trub1	91	83.071	ENSXMAG00000014701	trub1	92	83.071	Xiphophorus_maculatus