EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSNGAG00000001502 (Gene tree)
Gene ID: 103738008
Gene Symbol: Pabpc4l
Alias: C330050A14Rik|EG241989
Full Name: poly(A) binding protein cytoplasmic 4 like
Gene Type: protein_coding
Species: Nannospalax_galili
Status: putative
Strand: Plus strand
Length: 1113 bases
Position: chrKL201584.1:5087326-5088438
Accession: 103738008
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNGAP00000001993	RRM_5	PF13893.6	2.5e-13	1	3
ENSNGAP00000001993	RRM_5	PF13893.6	2.5e-13	2	3
ENSNGAP00000001993	RRM_5	PF13893.6	2.5e-13	3	3
ENSNGAP00000001993	RRM_1	PF00076.22	1.1e-82	1	4
ENSNGAP00000001993	RRM_1	PF00076.22	1.1e-82	2	4
ENSNGAP00000001993	RRM_1	PF00076.22	1.1e-82	3	4
ENSNGAP00000001993	RRM_1	PF00076.22	1.1e-82	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNGAT00000002057	-	1113	XM_008837824	ENSNGAP00000001993	370 (aa)	XP_008836046	UPI0004ED6F02

Gene Model

Click here to download ENSNGAG00000001502's gene model file

Pathways

Pathway ID	Pathway Name	Source
ngi03013	RNA transport	KEGG
ngi03015	mRNA surveillance pathway	KEGG
ngi03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSNGAG00000001502's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSNGAG00000001502	Pabpc4l	96	30.769	ENSNGAG00000014535	Elavl2	81	30.769
ENSNGAG00000001502	Pabpc4l	98	63.388	ENSNGAG00000012688	-	98	61.735
ENSNGAG00000001502	Pabpc4l	98	59.780	ENSNGAG00000023820	-	60	59.780
ENSNGAG00000001502	Pabpc4l	98	61.773	ENSNGAG00000010458	Pabpc1l	61	61.773
ENSNGAG00000001502	Pabpc4l	68	38.202	ENSNGAG00000001192	Cirbp	54	38.202
ENSNGAG00000001502	Pabpc4l	99	72.011	ENSNGAG00000018292	Pabpc4	62	72.011
ENSNGAG00000001502	Pabpc4l	98	70.523	ENSNGAG00000000996	Pabpc1	60	70.523
ENSNGAG00000001502	Pabpc4l	98	57.277	ENSNGAG00000004371	Pabpc5	99	57.277
ENSNGAG00000001502	Pabpc4l	85	31.387	ENSNGAG00000020427	Tial1	80	31.387
ENSNGAG00000001502	Pabpc4l	98	55.385	ENSNGAG00000023773	-	62	54.270
ENSNGAG00000001502	Pabpc4l	99	63.934	ENSNGAG00000016040	Pabpc2	61	63.934
ENSNGAG00000001502	Pabpc4l	50	36.111	ENSNGAG00000017390	Celf1	68	36.232
ENSNGAG00000001502	Pabpc4l	98	65.840	ENSNGAG00000000987	Pabpc6	61	65.840
ENSNGAG00000001502	Pabpc4l	97	30.055	ENSNGAG00000019590	Elavl1	93	30.055
ENSNGAG00000001502	Pabpc4l	66	40.260	ENSNGAG00000012951	Rbm3	59	40.260

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNGAG00000001502	Pabpc4l	100	87.568	ENSG00000254535	PABPC4L	100	87.568	Homo_sapiens
ENSNGAG00000001502	Pabpc4l	100	86.757	ENSANAG00000017199	PABPC4L	87	86.757	Aotus_nancymaae
ENSNGAG00000001502	Pabpc4l	99	84.824	ENSBTAG00000046902	PABPC4L	99	84.824	Bos_taurus
ENSNGAG00000001502	Pabpc4l	100	86.486	ENSCJAG00000045332	PABPC4L	86	86.486	Callithrix_jacchus
ENSNGAG00000001502	Pabpc4l	99	71.467	ENSCAFG00020019182	-	54	71.467	Canis_lupus_dingo
ENSNGAG00000001502	Pabpc4l	99	84.824	ENSCHIG00000007231	PABPC4L	99	84.824	Capra_hircus
ENSNGAG00000001502	Pabpc4l	98	77.015	ENSCAPG00000000555	PABPC4L	100	77.015	Cavia_aperea
ENSNGAG00000001502	Pabpc4l	100	74.324	ENSCPOG00000033167	PABPC4L	100	74.324	Cavia_porcellus
ENSNGAG00000001502	Pabpc4l	100	86.486	ENSCCAG00000031681	PABPC4L	86	86.486	Cebus_capucinus
ENSNGAG00000001502	Pabpc4l	100	81.351	ENSCLAG00000017628	PABPC4L	100	81.351	Chinchilla_lanigera
ENSNGAG00000001502	Pabpc4l	100	85.405	ENSCANG00000037677	PABPC4L	100	85.405	Colobus_angolensis_palliatus
ENSNGAG00000001502	Pabpc4l	100	87.838	ENSCGRG00001002070	Pabpc4l	100	87.838	Cricetulus_griseus_chok1gshd
ENSNGAG00000001502	Pabpc4l	100	87.838	ENSCGRG00000020086	Pabpc4l	100	87.838	Cricetulus_griseus_crigri
ENSNGAG00000001502	Pabpc4l	100	86.757	ENSDNOG00000031077	PABPC4L	95	86.757	Dasypus_novemcinctus
ENSNGAG00000001502	Pabpc4l	99	84.011	ENSEASG00005007883	PABPC4L	99	84.011	Equus_asinus_asinus
ENSNGAG00000001502	Pabpc4l	99	84.553	ENSECAG00000031416	PABPC4L	99	84.553	Equus_caballus
ENSNGAG00000001502	Pabpc4l	99	84.553	ENSFCAG00000028270	PABPC4L	99	84.553	Felis_catus
ENSNGAG00000001502	Pabpc4l	99	79.675	ENSFDAG00000019606	PABPC4L	99	79.675	Fukomys_damarensis
ENSNGAG00000001502	Pabpc4l	100	87.027	ENSGGOG00000024991	PABPC4L	100	87.027	Gorilla_gorilla
ENSNGAG00000001502	Pabpc4l	99	79.675	ENSHGLG00000020104	PABPC4L	99	79.675	Heterocephalus_glaber_female
ENSNGAG00000001502	Pabpc4l	99	79.675	ENSHGLG00100020648	PABPC4L	99	79.675	Heterocephalus_glaber_male
ENSNGAG00000001502	Pabpc4l	100	85.445	ENSSTOG00000019472	PABPC4L	99	85.445	Ictidomys_tridecemlineatus
ENSNGAG00000001502	Pabpc4l	99	84.011	ENSJJAG00000004090	Pabpc4l	99	84.011	Jaculus_jaculus
ENSNGAG00000001502	Pabpc4l	100	87.838	ENSMAUG00000016313	Pabpc4l	100	87.838	Mesocricetus_auratus
ENSNGAG00000001502	Pabpc4l	100	87.297	ENSMICG00000029683	PABPC4L	100	87.297	Microcebus_murinus
ENSNGAG00000001502	Pabpc4l	100	89.189	ENSMOCG00000007551	Pabpc4l	100	89.189	Microtus_ochrogaster
ENSNGAG00000001502	Pabpc4l	100	85.135	MGP_CAROLIEiJ_G0024968	Pabpc4l	100	86.000	Mus_caroli
ENSNGAG00000001502	Pabpc4l	100	85.405	ENSMUSG00000090919	Pabpc4l	100	86.000	Mus_musculus
ENSNGAG00000001502	Pabpc4l	100	85.676	MGP_PahariEiJ_G0026409	Pabpc4l	100	85.676	Mus_pahari
ENSNGAG00000001502	Pabpc4l	100	84.865	MGP_SPRETEiJ_G0025903	Pabpc4l	100	86.000	Mus_spretus
ENSNGAG00000001502	Pabpc4l	99	77.507	ENSMLUG00000008254	PABPC4L	99	77.507	Myotis_lucifugus
ENSNGAG00000001502	Pabpc4l	100	87.297	ENSNLEG00000019300	PABPC4L	100	87.297	Nomascus_leucogenys
ENSNGAG00000001502	Pabpc4l	100	80.000	ENSOGAG00000026166	PABPC4L	100	80.000	Otolemur_garnettii
ENSNGAG00000001502	Pabpc4l	99	87.307	ENSPPAG00000043745	PABPC4L	93	87.307	Pan_paniscus
ENSNGAG00000001502	Pabpc4l	99	84.011	ENSPPRG00000018628	PABPC4L	99	84.011	Panthera_pardus
ENSNGAG00000001502	Pabpc4l	99	84.553	ENSPTIG00000010106	PABPC4L	99	84.553	Panthera_tigris_altaica
ENSNGAG00000001502	Pabpc4l	99	87.307	ENSPTRG00000045513	-	81	87.307	Pan_troglodytes
ENSNGAG00000001502	Pabpc4l	100	88.649	ENSPEMG00000012565	Pabpc4l	100	88.649	Peromyscus_maniculatus_bairdii
ENSNGAG00000001502	Pabpc4l	100	87.297	ENSPCOG00000025578	PABPC4L	100	87.297	Propithecus_coquereli
ENSNGAG00000001502	Pabpc4l	100	85.946	ENSRNOG00000029749	Pabpc4l	100	85.946	Rattus_norvegicus
ENSNGAG00000001502	Pabpc4l	100	85.135	ENSRBIG00000030229	PABPC4L	100	85.135	Rhinopithecus_bieti
ENSNGAG00000001502	Pabpc4l	100	84.865	ENSRROG00000020367	PABPC4L	100	84.865	Rhinopithecus_roxellana
ENSNGAG00000001502	Pabpc4l	100	85.676	ENSSBOG00000016382	PABPC4L	100	85.676	Saimiri_boliviensis_boliviensis
ENSNGAG00000001502	Pabpc4l	99	78.591	ENSSSCG00000009067	PABPC4L	99	78.591	Sus_scrofa
ENSNGAG00000001502	Pabpc4l	99	84.553	ENSUAMG00000001289	PABPC4L	99	84.553	Ursus_americanus
ENSNGAG00000001502	Pabpc4l	99	84.553	ENSUMAG00000014887	PABPC4L	99	84.553	Ursus_maritimus
ENSNGAG00000001502	Pabpc4l	89	72.289	ENSVVUG00000011060	-	76	72.289	Vulpes_vulpes