EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSNGAG00000001567 (Gene tree)
Gene ID: 103726468
Gene Symbol: Cpsf4
Alias: 30kDa
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Nannospalax_galili
Status: putative
Strand: Plus strand
Length: 15923 bases
Position: chrKL205402.1:2435318-2451240
Accession: 103726468
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNGAP00000002068	zf-CCCH	PF00642.24	3e-20	1	2
ENSNGAP00000002068	zf-CCCH	PF00642.24	3e-20	2	2
ENSNGAP00000002074	zf-CCCH	PF00642.24	1.2e-15	1	2
ENSNGAP00000002074	zf-CCCH	PF00642.24	1.2e-15	2	2
ENSNGAP00000002074	zf-CCHC	PF00098.23	2.9e-06	1	1
ENSNGAP00000002068	zf-CCHC	PF00098.23	3.9e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNGAT00000002160	-	1149	XM_008824040	ENSNGAP00000002068	269 (aa)	XP_008822262	UPI0004ECFDB0
ENSNGAT00000002167	-	636	-	ENSNGAP00000002074	211 (aa)	-	-

Gene Model

Click here to download ENSNGAG00000001567's gene model file

Pathways

Pathway ID	Pathway Name	Source
ngi03015	mRNA surveillance pathway	KEGG
ngi05164	Influenza A	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSNGAG00000001567's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSNGAG00000001567	Cpsf4	61	65.455	ENSNGAG00000009325	-	96	65.455

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNGAG00000001567	Cpsf4	100	98.885	ENSG00000160917	CPSF4	100	100.000	Homo_sapiens
ENSNGAG00000001567	Cpsf4	67	74.725	ENSAPOG00000004921	cpsf4	100	74.725	Acanthochromis_polyacanthus
ENSNGAG00000001567	Cpsf4	100	99.628	ENSAMEG00000006252	CPSF4	100	99.628	Ailuropoda_melanoleuca
ENSNGAG00000001567	Cpsf4	100	79.554	ENSACIG00000009248	cpsf4	100	77.695	Amphilophus_citrinellus
ENSNGAG00000001567	Cpsf4	100	85.556	ENSAOCG00000019616	cpsf4	100	85.556	Amphiprion_ocellaris
ENSNGAG00000001567	Cpsf4	100	85.556	ENSAPEG00000011679	cpsf4	100	85.556	Amphiprion_percula
ENSNGAG00000001567	Cpsf4	100	84.559	ENSATEG00000007010	cpsf4	100	84.559	Anabas_testudineus
ENSNGAG00000001567	Cpsf4	100	93.309	ENSACAG00000012941	CPSF4	89	93.309	Anolis_carolinensis
ENSNGAG00000001567	Cpsf4	100	98.885	ENSANAG00000021360	CPSF4	100	98.885	Aotus_nancymaae
ENSNGAG00000001567	Cpsf4	100	83.704	ENSACLG00000010374	cpsf4	100	83.704	Astatotilapia_calliptera
ENSNGAG00000001567	Cpsf4	100	85.782	ENSAMXG00000031647	cpsf4	100	86.256	Astyanax_mexicanus
ENSNGAG00000001567	Cpsf4	100	89.219	ENSBTAG00000002090	CPSF4	100	89.219	Bos_taurus
ENSNGAG00000001567	Cpsf4	100	98.885	ENSCJAG00000015826	CPSF4	100	98.885	Callithrix_jacchus
ENSNGAG00000001567	Cpsf4	100	99.257	ENSCAFG00000015036	CPSF4	100	99.257	Canis_familiaris
ENSNGAG00000001567	Cpsf4	100	92.937	ENSCAFG00020014462	CPSF4	100	92.937	Canis_lupus_dingo
ENSNGAG00000001567	Cpsf4	100	98.885	ENSCHIG00000014313	CPSF4	100	98.885	Capra_hircus
ENSNGAG00000001567	Cpsf4	85	89.503	ENSTSYG00000008195	-	100	89.503	Carlito_syrichta
ENSNGAG00000001567	Cpsf4	100	98.578	ENSTSYG00000005712	-	100	98.578	Carlito_syrichta
ENSNGAG00000001567	Cpsf4	100	88.263	ENSTSYG00000014604	-	100	88.263	Carlito_syrichta
ENSNGAG00000001567	Cpsf4	81	99.541	ENSCAPG00000013881	CPSF4	87	99.541	Cavia_aperea
ENSNGAG00000001567	Cpsf4	100	99.526	ENSCPOG00000001783	CPSF4	100	99.526	Cavia_porcellus
ENSNGAG00000001567	Cpsf4	100	98.885	ENSCCAG00000028291	CPSF4	100	98.885	Cebus_capucinus
ENSNGAG00000001567	Cpsf4	100	98.885	ENSCATG00000038440	CPSF4	100	98.885	Cercocebus_atys
ENSNGAG00000001567	Cpsf4	100	99.257	ENSCLAG00000007050	CPSF4	100	99.257	Chinchilla_lanigera
ENSNGAG00000001567	Cpsf4	100	98.885	ENSCSAG00000017795	CPSF4	100	98.885	Chlorocebus_sabaeus
ENSNGAG00000001567	Cpsf4	80	95.370	ENSCPBG00000020869	CPSF4	100	95.370	Chrysemys_picta_bellii
ENSNGAG00000001567	Cpsf4	61	81.212	ENSCPBG00000010269	-	100	80.723	Chrysemys_picta_bellii
ENSNGAG00000001567	Cpsf4	97	55.939	ENSCING00000021080	-	97	55.939	Ciona_intestinalis
ENSNGAG00000001567	Cpsf4	96	53.710	ENSCSAVG00000011469	-	97	53.381	Ciona_savignyi
ENSNGAG00000001567	Cpsf4	100	98.885	ENSCANG00000019384	CPSF4	100	98.885	Colobus_angolensis_palliatus
ENSNGAG00000001567	Cpsf4	100	99.526	ENSCGRG00001024184	Cpsf4	100	99.526	Cricetulus_griseus_chok1gshd
ENSNGAG00000001567	Cpsf4	100	99.628	ENSCGRG00000013892	Cpsf4	100	99.628	Cricetulus_griseus_crigri
ENSNGAG00000001567	Cpsf4	100	84.834	ENSCSEG00000019055	cpsf4	100	84.834	Cynoglossus_semilaevis
ENSNGAG00000001567	Cpsf4	100	83.333	ENSCVAG00000016528	cpsf4	100	83.333	Cyprinodon_variegatus
ENSNGAG00000001567	Cpsf4	100	85.240	ENSDARG00000020217	cpsf4	100	85.240	Danio_rerio
ENSNGAG00000001567	Cpsf4	100	99.257	ENSDNOG00000006344	CPSF4	100	99.257	Dasypus_novemcinctus
ENSNGAG00000001567	Cpsf4	81	99.078	ENSDORG00000000742	Cpsf4	100	99.078	Dipodomys_ordii
ENSNGAG00000001567	Cpsf4	100	54.422	FBgn0015621	Clp	99	54.110	Drosophila_melanogaster
ENSNGAG00000001567	Cpsf4	73	100.000	ENSETEG00000002608	CPSF4	70	100.000	Echinops_telfairi
ENSNGAG00000001567	Cpsf4	99	65.169	ENSEBUG00000012552	cpsf4	98	65.169	Eptatretus_burgeri
ENSNGAG00000001567	Cpsf4	100	90.335	ENSEASG00005002487	CPSF4	100	90.335	Equus_asinus_asinus
ENSNGAG00000001567	Cpsf4	100	99.628	ENSECAG00000007525	CPSF4	100	99.628	Equus_caballus
ENSNGAG00000001567	Cpsf4	68	100.000	ENSEEUG00000002158	CPSF4	73	100.000	Erinaceus_europaeus
ENSNGAG00000001567	Cpsf4	100	82.847	ENSELUG00000011481	cpsf4	100	80.657	Esox_lucius
ENSNGAG00000001567	Cpsf4	100	99.628	ENSFCAG00000015070	CPSF4	100	99.628	Felis_catus
ENSNGAG00000001567	Cpsf4	61	56.977	ENSFALG00000012906	-	100	56.977	Ficedula_albicollis
ENSNGAG00000001567	Cpsf4	100	85.874	ENSFALG00000013799	CPSF4	100	84.387	Ficedula_albicollis
ENSNGAG00000001567	Cpsf4	90	98.765	ENSFDAG00000014092	CPSF4	100	98.765	Fukomys_damarensis
ENSNGAG00000001567	Cpsf4	100	83.333	ENSFHEG00000010880	cpsf4	100	83.333	Fundulus_heteroclitus
ENSNGAG00000001567	Cpsf4	100	77.491	ENSGMOG00000002330	cpsf4	100	76.015	Gadus_morhua
ENSNGAG00000001567	Cpsf4	99	38.421	ENSGALG00000004441	-	98	32.609	Gallus_gallus
ENSNGAG00000001567	Cpsf4	100	86.245	ENSGALG00000004714	CPSF4	100	85.130	Gallus_gallus
ENSNGAG00000001567	Cpsf4	100	82.963	ENSGAFG00000010580	cpsf4	100	82.963	Gambusia_affinis
ENSNGAG00000001567	Cpsf4	100	77.491	ENSGACG00000007792	cpsf4	100	76.384	Gasterosteus_aculeatus
ENSNGAG00000001567	Cpsf4	100	95.539	ENSGAGG00000021835	CPSF4	100	95.539	Gopherus_agassizii
ENSNGAG00000001567	Cpsf4	68	76.923	ENSGAGG00000020579	-	92	81.212	Gopherus_agassizii
ENSNGAG00000001567	Cpsf4	100	98.885	ENSGGOG00000015131	CPSF4	100	98.885	Gorilla_gorilla
ENSNGAG00000001567	Cpsf4	100	83.704	ENSHBUG00000013699	cpsf4	100	83.704	Haplochromis_burtoni
ENSNGAG00000001567	Cpsf4	100	99.052	ENSHGLG00000017150	CPSF4	100	99.052	Heterocephalus_glaber_female
ENSNGAG00000001567	Cpsf4	100	71.090	ENSHGLG00100017302	-	100	68.720	Heterocephalus_glaber_male
ENSNGAG00000001567	Cpsf4	87	95.763	ENSHGLG00100009215	-	100	96.591	Heterocephalus_glaber_male
ENSNGAG00000001567	Cpsf4	100	81.111	ENSHCOG00000004397	cpsf4	100	78.519	Hippocampus_comes
ENSNGAG00000001567	Cpsf4	100	84.133	ENSIPUG00000017147	cpsf4	100	85.294	Ictalurus_punctatus
ENSNGAG00000001567	Cpsf4	100	99.628	ENSSTOG00000001688	CPSF4	100	99.628	Ictidomys_tridecemlineatus
ENSNGAG00000001567	Cpsf4	100	99.257	ENSJJAG00000019426	Cpsf4	100	99.257	Jaculus_jaculus
ENSNGAG00000001567	Cpsf4	100	82.222	ENSKMAG00000015642	cpsf4	100	82.222	Kryptolebias_marmoratus
ENSNGAG00000001567	Cpsf4	100	88.889	ENSLACG00000010938	CPSF4	100	88.889	Latimeria_chalumnae
ENSNGAG00000001567	Cpsf4	100	60.741	ENSLACG00000018470	-	100	60.741	Latimeria_chalumnae
ENSNGAG00000001567	Cpsf4	100	89.963	ENSLOCG00000004814	cpsf4	100	89.963	Lepisosteus_oculatus
ENSNGAG00000001567	Cpsf4	100	99.257	ENSLAFG00000000159	CPSF4	100	99.257	Loxodonta_africana
ENSNGAG00000001567	Cpsf4	100	98.885	ENSMFAG00000001462	CPSF4	100	98.885	Macaca_fascicularis
ENSNGAG00000001567	Cpsf4	100	98.885	ENSMMUG00000019191	CPSF4	100	98.885	Macaca_mulatta
ENSNGAG00000001567	Cpsf4	100	98.885	ENSMNEG00000032306	CPSF4	100	98.885	Macaca_nemestrina
ENSNGAG00000001567	Cpsf4	100	98.885	ENSMLEG00000034721	CPSF4	100	98.885	Mandrillus_leucophaeus
ENSNGAG00000001567	Cpsf4	100	84.444	ENSMAMG00000006244	cpsf4	100	83.883	Mastacembelus_armatus
ENSNGAG00000001567	Cpsf4	100	83.704	ENSMZEG00005007515	cpsf4	100	83.704	Maylandia_zebra
ENSNGAG00000001567	Cpsf4	87	84.681	ENSMGAG00000004235	CPSF4	100	83.404	Meleagris_gallopavo
ENSNGAG00000001567	Cpsf4	100	99.628	ENSMAUG00000021253	Cpsf4	100	99.628	Mesocricetus_auratus
ENSNGAG00000001567	Cpsf4	100	98.885	ENSMICG00000017429	CPSF4	100	98.885	Microcebus_murinus
ENSNGAG00000001567	Cpsf4	100	99.628	ENSMOCG00000014901	Cpsf4	100	99.628	Microtus_ochrogaster
ENSNGAG00000001567	Cpsf4	100	84.834	ENSMMOG00000001813	cpsf4	100	84.834	Mola_mola
ENSNGAG00000001567	Cpsf4	100	97.026	ENSMODG00000001367	CPSF4	100	97.026	Monodelphis_domestica
ENSNGAG00000001567	Cpsf4	100	82.593	ENSMALG00000012611	cpsf4	100	82.593	Monopterus_albus
ENSNGAG00000001567	Cpsf4	100	99.628	MGP_CAROLIEiJ_G0028012	Cpsf4	100	99.628	Mus_caroli
ENSNGAG00000001567	Cpsf4	100	99.628	ENSMUSG00000029625	Cpsf4	100	99.628	Mus_musculus
ENSNGAG00000001567	Cpsf4	100	99.628	MGP_PahariEiJ_G0024581	Cpsf4	100	99.628	Mus_pahari
ENSNGAG00000001567	Cpsf4	100	99.257	MGP_SPRETEiJ_G0029013	Cpsf4	100	99.257	Mus_spretus
ENSNGAG00000001567	Cpsf4	100	99.628	ENSMPUG00000016508	CPSF4	100	99.628	Mustela_putorius_furo
ENSNGAG00000001567	Cpsf4	87	87.660	ENSMLUG00000010980	CPSF4	100	87.660	Myotis_lucifugus
ENSNGAG00000001567	Cpsf4	91	83.333	ENSNBRG00000003943	cpsf4	98	83.333	Neolamprologus_brichardi
ENSNGAG00000001567	Cpsf4	100	98.578	ENSNLEG00000011074	CPSF4	100	98.578	Nomascus_leucogenys
ENSNGAG00000001567	Cpsf4	100	97.026	ENSMEUG00000006955	CPSF4	100	97.026	Notamacropus_eugenii
ENSNGAG00000001567	Cpsf4	100	98.885	ENSOPRG00000013663	CPSF4	100	98.885	Ochotona_princeps
ENSNGAG00000001567	Cpsf4	100	75.092	ENSODEG00000009779	-	100	75.092	Octodon_degus
ENSNGAG00000001567	Cpsf4	100	99.628	ENSODEG00000011181	-	100	99.628	Octodon_degus
ENSNGAG00000001567	Cpsf4	98	78.302	ENSODEG00000018283	-	89	78.302	Octodon_degus
ENSNGAG00000001567	Cpsf4	100	83.704	ENSONIG00000008495	cpsf4	100	83.704	Oreochromis_niloticus
ENSNGAG00000001567	Cpsf4	100	55.036	ENSOANG00000009568	-	100	53.237	Ornithorhynchus_anatinus
ENSNGAG00000001567	Cpsf4	87	95.319	ENSOANG00000007729	CPSF4	100	95.319	Ornithorhynchus_anatinus
ENSNGAG00000001567	Cpsf4	100	98.885	ENSOCUG00000002437	CPSF4	70	98.885	Oryctolagus_cuniculus
ENSNGAG00000001567	Cpsf4	100	83.271	ENSORLG00000022798	cpsf4	100	83.271	Oryzias_latipes
ENSNGAG00000001567	Cpsf4	100	83.271	ENSORLG00020008548	cpsf4	100	83.271	Oryzias_latipes_hni
ENSNGAG00000001567	Cpsf4	100	82.900	ENSORLG00015019575	cpsf4	100	82.900	Oryzias_latipes_hsok
ENSNGAG00000001567	Cpsf4	100	83.886	ENSOMEG00000005176	cpsf4	100	83.886	Oryzias_melastigma
ENSNGAG00000001567	Cpsf4	100	99.257	ENSOGAG00000010884	CPSF4	100	99.257	Otolemur_garnettii
ENSNGAG00000001567	Cpsf4	100	87.546	ENSOARG00000018668	CPSF4	100	87.179	Ovis_aries
ENSNGAG00000001567	Cpsf4	100	98.885	ENSPPAG00000043355	CPSF4	100	98.885	Pan_paniscus
ENSNGAG00000001567	Cpsf4	100	99.628	ENSPPRG00000003134	CPSF4	100	99.628	Panthera_pardus
ENSNGAG00000001567	Cpsf4	90	99.174	ENSPTIG00000005604	CPSF4	90	99.174	Panthera_tigris_altaica
ENSNGAG00000001567	Cpsf4	100	98.885	ENSPTRG00000019453	CPSF4	100	98.885	Pan_troglodytes
ENSNGAG00000001567	Cpsf4	100	98.885	ENSPANG00000023123	CPSF4	100	98.885	Papio_anubis
ENSNGAG00000001567	Cpsf4	100	84.307	ENSPKIG00000014278	cpsf4	100	84.307	Paramormyrops_kingsleyae
ENSNGAG00000001567	Cpsf4	80	94.907	ENSPSIG00000011229	CPSF4	100	94.907	Pelodiscus_sinensis
ENSNGAG00000001567	Cpsf4	81	58.904	ENSPSIG00000018198	-	100	57.798	Pelodiscus_sinensis
ENSNGAG00000001567	Cpsf4	100	72.862	ENSPMGG00000017735	cpsf4	100	71.587	Periophthalmus_magnuspinnatus
ENSNGAG00000001567	Cpsf4	100	99.628	ENSPEMG00000004508	Cpsf4	100	99.628	Peromyscus_maniculatus_bairdii
ENSNGAG00000001567	Cpsf4	100	97.026	ENSPCIG00000024776	CPSF4	100	97.026	Phascolarctos_cinereus
ENSNGAG00000001567	Cpsf4	100	82.963	ENSPFOG00000014912	cpsf4	100	82.963	Poecilia_formosa
ENSNGAG00000001567	Cpsf4	100	75.465	ENSPLAG00000009599	cpsf4	100	75.465	Poecilia_latipinna
ENSNGAG00000001567	Cpsf4	100	82.963	ENSPMEG00000009790	cpsf4	100	82.963	Poecilia_mexicana
ENSNGAG00000001567	Cpsf4	100	82.222	ENSPREG00000018166	cpsf4	100	78.889	Poecilia_reticulata
ENSNGAG00000001567	Cpsf4	87	98.291	ENSPPYG00000017378	CPSF4	100	98.291	Pongo_abelii
ENSNGAG00000001567	Cpsf4	100	98.513	ENSPCAG00000001892	CPSF4	100	98.513	Procavia_capensis
ENSNGAG00000001567	Cpsf4	100	99.257	ENSPCOG00000012771	CPSF4	100	99.257	Propithecus_coquereli
ENSNGAG00000001567	Cpsf4	100	92.937	ENSPVAG00000007531	CPSF4	100	92.937	Pteropus_vampyrus
ENSNGAG00000001567	Cpsf4	100	83.704	ENSPNYG00000018559	cpsf4	100	83.704	Pundamilia_nyererei
ENSNGAG00000001567	Cpsf4	100	86.347	ENSPNAG00000003736	cpsf4	100	87.085	Pygocentrus_nattereri
ENSNGAG00000001567	Cpsf4	100	99.526	ENSRNOG00000000985	Cpsf4	100	99.526	Rattus_norvegicus
ENSNGAG00000001567	Cpsf4	87	98.718	ENSRBIG00000033886	CPSF4	100	98.718	Rhinopithecus_bieti
ENSNGAG00000001567	Cpsf4	100	98.578	ENSRROG00000040431	CPSF4	100	98.578	Rhinopithecus_roxellana
ENSNGAG00000001567	Cpsf4	100	98.885	ENSSBOG00000020493	CPSF4	100	98.885	Saimiri_boliviensis_boliviensis
ENSNGAG00000001567	Cpsf4	100	97.026	ENSSHAG00000011533	CPSF4	100	97.026	Sarcophilus_harrisii
ENSNGAG00000001567	Cpsf4	100	85.507	ENSSFOG00015007883	cpsf4	100	86.232	Scleropages_formosus
ENSNGAG00000001567	Cpsf4	100	79.182	ENSSMAG00000006374	cpsf4	100	77.695	Scophthalmus_maximus
ENSNGAG00000001567	Cpsf4	100	83.704	ENSSDUG00000018887	cpsf4	100	83.704	Seriola_dumerili
ENSNGAG00000001567	Cpsf4	100	83.704	ENSSLDG00000019078	cpsf4	100	83.704	Seriola_lalandi_dorsalis
ENSNGAG00000001567	Cpsf4	87	99.145	ENSSARG00000012416	CPSF4	100	99.145	Sorex_araneus
ENSNGAG00000001567	Cpsf4	100	94.052	ENSSPUG00000003549	CPSF4	100	94.052	Sphenodon_punctatus
ENSNGAG00000001567	Cpsf4	96	58.915	ENSSPUG00000014803	-	97	59.690	Sphenodon_punctatus
ENSNGAG00000001567	Cpsf4	100	80.297	ENSSPAG00000006174	cpsf4	100	77.323	Stegastes_partitus
ENSNGAG00000001567	Cpsf4	100	89.963	ENSSSCG00000026896	CPSF4	100	89.963	Sus_scrofa
ENSNGAG00000001567	Cpsf4	100	84.871	ENSTGUG00000007552	CPSF4	100	83.395	Taeniopygia_guttata
ENSNGAG00000001567	Cpsf4	100	80.952	ENSTRUG00000024220	cpsf4	100	80.952	Takifugu_rubripes
ENSNGAG00000001567	Cpsf4	100	80.000	ENSTNIG00000006265	cpsf4	100	81.481	Tetraodon_nigroviridis
ENSNGAG00000001567	Cpsf4	87	89.316	ENSTBEG00000011406	CPSF4	100	89.316	Tupaia_belangeri
ENSNGAG00000001567	Cpsf4	100	78.439	ENSTTRG00000003007	CPSF4	100	78.439	Tursiops_truncatus
ENSNGAG00000001567	Cpsf4	92	89.069	ENSUAMG00000008051	CPSF4	85	89.069	Ursus_americanus
ENSNGAG00000001567	Cpsf4	100	89.963	ENSUMAG00000009474	CPSF4	100	89.963	Ursus_maritimus
ENSNGAG00000001567	Cpsf4	100	89.963	ENSVVUG00000008824	CPSF4	100	89.963	Vulpes_vulpes
ENSNGAG00000001567	Cpsf4	100	88.172	ENSXETG00000009892	cpsf4	100	88.172	Xenopus_tropicalis
ENSNGAG00000001567	Cpsf4	99	60.526	ENSXETG00000004641	cpsf4l	99	60.526	Xenopus_tropicalis
ENSNGAG00000001567	Cpsf4	100	84.360	ENSXCOG00000016040	cpsf4	100	84.360	Xiphophorus_couchianus
ENSNGAG00000001567	Cpsf4	100	82.963	ENSXMAG00000024670	cpsf4	100	82.963	Xiphophorus_maculatus