EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSNGAG00000001870 (Gene tree)
Gene ID: 103738279
Gene Symbol: Lsm12
Alias: 1110032E16Rik|2600001B17Rik
Full Name: LSM12 homolog
Gene Type: protein_coding
Species: Nannospalax_galili
Status: putative
Strand: Minus strand
Length: 25078 bases
Position: chrKL201675.1:637246-662323
Accession: 103738279
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNGAP00000002266	AD	PF09793.9	1.9e-24	1	1
ENSNGAP00000002272	AD	PF09793.9	2.5e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNGAT00000002503	-	892	XM_008838154	ENSNGAP00000002266	195 (aa)	XP_008836376	UPI0000021A76
ENSNGAT00000002516	-	414	-	ENSNGAP00000002272	137 (aa)	-	UPI0000416DA0

Gene Model

Click here to download ENSNGAG00000001870's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSNGAG00000001870's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSNGAG00000001870	Lsm12	100	67.327	ENSNGAG00000015429	-	100	67.327

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNGAG00000001870	Lsm12	100	100.000	ENSG00000161654	LSM12	100	100.000	Homo_sapiens
ENSNGAG00000001870	Lsm12	100	86.224	ENSAPOG00000007907	lsm12b	100	86.224	Acanthochromis_polyacanthus
ENSNGAG00000001870	Lsm12	100	100.000	ENSAMEG00000018321	LSM12	100	97.980	Ailuropoda_melanoleuca
ENSNGAG00000001870	Lsm12	100	84.184	ENSACIG00000008538	lsm12b	100	84.184	Amphilophus_citrinellus
ENSNGAG00000001870	Lsm12	100	85.714	ENSAOCG00000021847	lsm12b	88	85.714	Amphiprion_ocellaris
ENSNGAG00000001870	Lsm12	100	85.714	ENSAPEG00000002252	lsm12b	100	85.714	Amphiprion_percula
ENSNGAG00000001870	Lsm12	100	85.204	ENSATEG00000005705	lsm12b	100	85.204	Anabas_testudineus
ENSNGAG00000001870	Lsm12	99	93.782	ENSACAG00000004618	LSM12	99	93.782	Anolis_carolinensis
ENSNGAG00000001870	Lsm12	100	100.000	ENSANAG00000029011	LSM12	100	100.000	Aotus_nancymaae
ENSNGAG00000001870	Lsm12	100	84.694	ENSACLG00000026332	lsm12b	100	84.694	Astatotilapia_calliptera
ENSNGAG00000001870	Lsm12	100	81.982	ENSAMXG00000036117	lsm12a	91	79.082	Astyanax_mexicanus
ENSNGAG00000001870	Lsm12	100	84.694	ENSAMXG00000032952	lsm12b	100	84.694	Astyanax_mexicanus
ENSNGAG00000001870	Lsm12	100	100.000	ENSBTAG00000016252	LSM12	100	100.000	Bos_taurus
ENSNGAG00000001870	Lsm12	100	100.000	ENSCJAG00000048480	LSM12	100	100.000	Callithrix_jacchus
ENSNGAG00000001870	Lsm12	100	100.000	ENSCAFG00000014379	LSM12	92	100.000	Canis_familiaris
ENSNGAG00000001870	Lsm12	100	100.000	ENSCAFG00020012173	LSM12	100	100.000	Canis_lupus_dingo
ENSNGAG00000001870	Lsm12	100	100.000	ENSCHIG00000018175	LSM12	100	100.000	Capra_hircus
ENSNGAG00000001870	Lsm12	100	100.000	ENSTSYG00000036361	LSM12	100	100.000	Carlito_syrichta
ENSNGAG00000001870	Lsm12	83	94.444	ENSCAPG00000009647	LSM12	89	94.444	Cavia_aperea
ENSNGAG00000001870	Lsm12	100	98.165	ENSCPOG00000012860	LSM12	100	98.165	Cavia_porcellus
ENSNGAG00000001870	Lsm12	100	100.000	ENSCCAG00000032905	LSM12	100	100.000	Cebus_capucinus
ENSNGAG00000001870	Lsm12	100	100.000	ENSCATG00000030577	-	100	100.000	Cercocebus_atys
ENSNGAG00000001870	Lsm12	100	98.974	ENSCLAG00000015759	LSM12	100	98.974	Chinchilla_lanigera
ENSNGAG00000001870	Lsm12	100	99.487	ENSCSAG00000003486	LSM12	100	99.487	Chlorocebus_sabaeus
ENSNGAG00000001870	Lsm12	80	99.083	ENSCHOG00000001198	LSM12	100	99.083	Choloepus_hoffmanni
ENSNGAG00000001870	Lsm12	99	93.264	ENSCPBG00000027105	LSM12	99	93.264	Chrysemys_picta_bellii
ENSNGAG00000001870	Lsm12	100	100.000	ENSCANG00000043328	LSM12	100	100.000	Colobus_angolensis_palliatus
ENSNGAG00000001870	Lsm12	100	100.000	ENSCGRG00001002094	Lsm12	100	100.000	Cricetulus_griseus_chok1gshd
ENSNGAG00000001870	Lsm12	80	100.000	ENSCGRG00000004316	Lsm12	95	92.857	Cricetulus_griseus_crigri
ENSNGAG00000001870	Lsm12	100	84.694	ENSCSEG00000008434	lsm12b	100	84.694	Cynoglossus_semilaevis
ENSNGAG00000001870	Lsm12	100	85.455	ENSCVAG00000008755	lsm12b	100	84.694	Cyprinodon_variegatus
ENSNGAG00000001870	Lsm12	100	77.041	ENSDARG00000028848	lsm12a	100	77.041	Danio_rerio
ENSNGAG00000001870	Lsm12	100	85.204	ENSDARG00000109510	lsm12b	100	85.204	Danio_rerio
ENSNGAG00000001870	Lsm12	100	99.487	ENSDNOG00000002418	LSM12	91	99.487	Dasypus_novemcinctus
ENSNGAG00000001870	Lsm12	100	100.000	ENSDORG00000016381	Lsm12	100	100.000	Dipodomys_ordii
ENSNGAG00000001870	Lsm12	74	31.646	FBgn0036057	CG14164	83	31.646	Drosophila_melanogaster
ENSNGAG00000001870	Lsm12	83	33.133	FBgn0030364	Lsm12	76	32.934	Drosophila_melanogaster
ENSNGAG00000001870	Lsm12	90	88.000	ENSETEG00000011012	-	100	88.000	Echinops_telfairi
ENSNGAG00000001870	Lsm12	100	100.000	ENSETEG00000008374	LSM12	100	99.487	Echinops_telfairi
ENSNGAG00000001870	Lsm12	84	63.415	ENSEBUG00000016299	lsm12a	92	63.415	Eptatretus_burgeri
ENSNGAG00000001870	Lsm12	100	100.000	ENSEASG00005010155	LSM12	100	100.000	Equus_asinus_asinus
ENSNGAG00000001870	Lsm12	100	100.000	ENSECAG00000009071	LSM12	100	100.000	Equus_caballus
ENSNGAG00000001870	Lsm12	81	96.396	ENSEEUG00000002419	-	100	98.693	Erinaceus_europaeus
ENSNGAG00000001870	Lsm12	100	82.143	ENSELUG00000000256	-	100	82.143	Esox_lucius
ENSNGAG00000001870	Lsm12	100	84.184	ENSELUG00000015538	lsm12b	100	79.592	Esox_lucius
ENSNGAG00000001870	Lsm12	100	100.000	ENSFCAG00000037021	LSM12	100	100.000	Felis_catus
ENSNGAG00000001870	Lsm12	81	97.297	ENSFDAG00000008954	LSM12	87	99.324	Fukomys_damarensis
ENSNGAG00000001870	Lsm12	100	84.545	ENSFHEG00000019913	lsm12b	100	83.673	Fundulus_heteroclitus
ENSNGAG00000001870	Lsm12	81	84.685	ENSGMOG00000015449	lsm12b	100	84.177	Gadus_morhua
ENSNGAG00000001870	Lsm12	80	92.661	ENSGALG00000039803	LSM12	100	94.118	Gallus_gallus
ENSNGAG00000001870	Lsm12	100	85.455	ENSGAFG00000011829	lsm12b	100	84.184	Gambusia_affinis
ENSNGAG00000001870	Lsm12	81	84.810	ENSGACG00000003428	lsm12b	100	84.810	Gasterosteus_aculeatus
ENSNGAG00000001870	Lsm12	99	94.301	ENSGAGG00000021965	LSM12	99	94.301	Gopherus_agassizii
ENSNGAG00000001870	Lsm12	100	100.000	ENSGGOG00000010589	-	100	100.000	Gorilla_gorilla
ENSNGAG00000001870	Lsm12	85	85.629	ENSHBUG00000007667	lsm12b	74	85.629	Haplochromis_burtoni
ENSNGAG00000001870	Lsm12	100	100.000	ENSHGLG00000011411	LSM12	100	100.000	Heterocephalus_glaber_female
ENSNGAG00000001870	Lsm12	80	99.091	ENSHGLG00100000241	LSM12	96	87.293	Heterocephalus_glaber_male
ENSNGAG00000001870	Lsm12	100	84.184	ENSHCOG00000002094	lsm12b	100	84.184	Hippocampus_comes
ENSNGAG00000001870	Lsm12	99	77.778	ENSIPUG00000008936	lsm12a	99	75.773	Ictalurus_punctatus
ENSNGAG00000001870	Lsm12	100	85.204	ENSIPUG00000014800	lsm12	100	85.204	Ictalurus_punctatus
ENSNGAG00000001870	Lsm12	100	100.000	ENSSTOG00000007403	LSM12	100	100.000	Ictidomys_tridecemlineatus
ENSNGAG00000001870	Lsm12	97	87.895	ENSJJAG00000011793	-	100	87.895	Jaculus_jaculus
ENSNGAG00000001870	Lsm12	81	84.906	ENSJJAG00000014652	-	95	84.906	Jaculus_jaculus
ENSNGAG00000001870	Lsm12	100	99.270	ENSJJAG00000004364	-	100	99.270	Jaculus_jaculus
ENSNGAG00000001870	Lsm12	86	86.310	ENSKMAG00000007704	lsm12b	57	86.310	Kryptolebias_marmoratus
ENSNGAG00000001870	Lsm12	100	85.714	ENSLBEG00000027999	lsm12b	100	85.714	Labrus_bergylta
ENSNGAG00000001870	Lsm12	99	90.909	ENSLACG00000015981	LSM12	99	90.155	Latimeria_chalumnae
ENSNGAG00000001870	Lsm12	100	86.486	ENSLOCG00000013079	lsm12b	99	83.673	Lepisosteus_oculatus
ENSNGAG00000001870	Lsm12	100	100.000	ENSLAFG00000005202	LSM12	100	100.000	Loxodonta_africana
ENSNGAG00000001870	Lsm12	100	100.000	ENSMFAG00000031376	LSM12	100	100.000	Macaca_fascicularis
ENSNGAG00000001870	Lsm12	100	67.883	ENSMMUG00000042106	-	100	86.207	Macaca_mulatta
ENSNGAG00000001870	Lsm12	100	67.153	ENSMMUG00000038408	-	100	86.207	Macaca_mulatta
ENSNGAG00000001870	Lsm12	100	100.000	ENSMMUG00000006804	LSM12	100	100.000	Macaca_mulatta
ENSNGAG00000001870	Lsm12	100	100.000	ENSMNEG00000030594	-	100	100.000	Macaca_nemestrina
ENSNGAG00000001870	Lsm12	100	100.000	ENSMLEG00000039934	LSM12	100	100.000	Mandrillus_leucophaeus
ENSNGAG00000001870	Lsm12	100	85.204	ENSMAMG00000004279	lsm12b	100	85.204	Mastacembelus_armatus
ENSNGAG00000001870	Lsm12	100	84.694	ENSMZEG00005005754	lsm12b	100	84.694	Maylandia_zebra
ENSNGAG00000001870	Lsm12	100	99.487	ENSMICG00000037219	LSM12	100	99.487	Microcebus_murinus
ENSNGAG00000001870	Lsm12	100	100.000	ENSMOCG00000019878	-	100	100.000	Microtus_ochrogaster
ENSNGAG00000001870	Lsm12	100	84.103	ENSMOCG00000017015	-	86	84.103	Microtus_ochrogaster
ENSNGAG00000001870	Lsm12	100	85.204	ENSMMOG00000020848	lsm12b	100	85.204	Mola_mola
ENSNGAG00000001870	Lsm12	100	85.204	ENSMALG00000007578	lsm12b	100	85.204	Monopterus_albus
ENSNGAG00000001870	Lsm12	100	99.487	MGP_CAROLIEiJ_G0017241	Lsm12	100	99.487	Mus_caroli
ENSNGAG00000001870	Lsm12	100	100.000	ENSMUSG00000020922	Lsm12	100	100.000	Mus_musculus
ENSNGAG00000001870	Lsm12	100	100.000	MGP_PahariEiJ_G0018371	Lsm12	100	100.000	Mus_pahari
ENSNGAG00000001870	Lsm12	100	99.487	MGP_SPRETEiJ_G0018084	Lsm12	100	99.487	Mus_spretus
ENSNGAG00000001870	Lsm12	100	99.487	ENSMLUG00000006391	LSM12	100	99.487	Myotis_lucifugus
ENSNGAG00000001870	Lsm12	100	84.694	ENSNBRG00000006266	lsm12b	100	84.694	Neolamprologus_brichardi
ENSNGAG00000001870	Lsm12	100	100.000	ENSNLEG00000005580	-	100	100.000	Nomascus_leucogenys
ENSNGAG00000001870	Lsm12	85	98.182	ENSMEUG00000007501	-	100	98.182	Notamacropus_eugenii
ENSNGAG00000001870	Lsm12	100	100.000	ENSOPRG00000008552	LSM12	100	100.000	Ochotona_princeps
ENSNGAG00000001870	Lsm12	100	98.462	ENSODEG00000017998	-	100	98.462	Octodon_degus
ENSNGAG00000001870	Lsm12	100	88.718	ENSODEG00000007886	-	74	88.718	Octodon_degus
ENSNGAG00000001870	Lsm12	100	84.694	ENSONIG00000007933	lsm12b	100	84.694	Oreochromis_niloticus
ENSNGAG00000001870	Lsm12	54	95.946	ENSOANG00000031724	-	100	90.123	Ornithorhynchus_anatinus
ENSNGAG00000001870	Lsm12	100	100.000	ENSOCUG00000008566	-	100	97.980	Oryctolagus_cuniculus
ENSNGAG00000001870	Lsm12	99	93.299	ENSOCUG00000021254	-	100	93.299	Oryctolagus_cuniculus
ENSNGAG00000001870	Lsm12	99	92.661	ENSOCUG00000024823	-	100	92.268	Oryctolagus_cuniculus
ENSNGAG00000001870	Lsm12	99	93.636	ENSOCUG00000027889	-	100	93.299	Oryctolagus_cuniculus
ENSNGAG00000001870	Lsm12	100	85.204	ENSORLG00000011310	lsm12b	100	85.204	Oryzias_latipes
ENSNGAG00000001870	Lsm12	100	85.204	ENSORLG00020002060	lsm12b	92	85.204	Oryzias_latipes_hni
ENSNGAG00000001870	Lsm12	100	85.204	ENSORLG00015001647	lsm12b	92	85.204	Oryzias_latipes_hsok
ENSNGAG00000001870	Lsm12	100	85.204	ENSOMEG00000006184	lsm12b	92	85.204	Oryzias_melastigma
ENSNGAG00000001870	Lsm12	100	99.487	ENSOGAG00000010489	LSM12	100	99.487	Otolemur_garnettii
ENSNGAG00000001870	Lsm12	100	100.000	ENSOARG00000006589	LSM12	100	96.517	Ovis_aries
ENSNGAG00000001870	Lsm12	100	92.254	ENSPPAG00000034974	-	100	92.254	Pan_paniscus
ENSNGAG00000001870	Lsm12	100	100.000	ENSPPRG00000023420	LSM12	100	100.000	Panthera_pardus
ENSNGAG00000001870	Lsm12	100	98.540	ENSPTIG00000014850	-	100	98.540	Panthera_tigris_altaica
ENSNGAG00000001870	Lsm12	81	98.198	ENSPTIG00000012704	-	82	100.000	Panthera_tigris_altaica
ENSNGAG00000001870	Lsm12	100	100.000	ENSPTRG00000009261	LSM12	100	100.000	Pan_troglodytes
ENSNGAG00000001870	Lsm12	100	100.000	ENSPANG00000021315	-	100	100.000	Papio_anubis
ENSNGAG00000001870	Lsm12	99	76.804	ENSPKIG00000017932	-	99	76.804	Paramormyrops_kingsleyae
ENSNGAG00000001870	Lsm12	100	86.486	ENSPKIG00000021058	lsm12b	100	86.224	Paramormyrops_kingsleyae
ENSNGAG00000001870	Lsm12	100	84.694	ENSPMGG00000021344	lsm12b	100	84.694	Periophthalmus_magnuspinnatus
ENSNGAG00000001870	Lsm12	100	100.000	ENSPEMG00000012199	Lsm12	100	100.000	Peromyscus_maniculatus_bairdii
ENSNGAG00000001870	Lsm12	88	66.279	ENSPMAG00000005461	lsm12a	99	66.279	Petromyzon_marinus
ENSNGAG00000001870	Lsm12	100	96.923	ENSPCIG00000020244	LSM12	100	96.923	Phascolarctos_cinereus
ENSNGAG00000001870	Lsm12	100	84.685	ENSPFOG00000015930	lsm12b	100	83.163	Poecilia_formosa
ENSNGAG00000001870	Lsm12	100	84.685	ENSPLAG00000021089	lsm12b	100	83.163	Poecilia_latipinna
ENSNGAG00000001870	Lsm12	100	84.685	ENSPMEG00000012961	lsm12b	100	83.163	Poecilia_mexicana
ENSNGAG00000001870	Lsm12	88	85.380	ENSPREG00000010236	lsm12b	95	85.380	Poecilia_reticulata
ENSNGAG00000001870	Lsm12	100	100.000	ENSPPYG00000008344	LSM12	100	100.000	Pongo_abelii
ENSNGAG00000001870	Lsm12	82	99.371	ENSPCAG00000008790	LSM12	100	99.371	Procavia_capensis
ENSNGAG00000001870	Lsm12	100	100.000	ENSPCOG00000027951	LSM12	100	100.000	Propithecus_coquereli
ENSNGAG00000001870	Lsm12	100	99.487	ENSPVAG00000013706	LSM12	100	99.487	Pteropus_vampyrus
ENSNGAG00000001870	Lsm12	100	84.694	ENSPNYG00000003386	lsm12b	100	84.694	Pundamilia_nyererei
ENSNGAG00000001870	Lsm12	100	81.982	ENSPNAG00000018435	lsm12a	100	77.041	Pygocentrus_nattereri
ENSNGAG00000001870	Lsm12	100	84.545	ENSPNAG00000004186	lsm12b	100	83.163	Pygocentrus_nattereri
ENSNGAG00000001870	Lsm12	100	100.000	ENSRNOG00000020894	Lsm12	100	100.000	Rattus_norvegicus
ENSNGAG00000001870	Lsm12	100	100.000	ENSRBIG00000027910	LSM12	100	100.000	Rhinopithecus_bieti
ENSNGAG00000001870	Lsm12	100	83.212	ENSRROG00000000537	-	100	83.212	Rhinopithecus_roxellana
ENSNGAG00000001870	Lsm12	100	100.000	ENSRROG00000045530	-	100	100.000	Rhinopithecus_roxellana
ENSNGAG00000001870	Lsm12	77	33.051	YHR121W	-	61	33.051	Saccharomyces_cerevisiae
ENSNGAG00000001870	Lsm12	100	100.000	ENSSBOG00000025310	LSM12	100	100.000	Saimiri_boliviensis_boliviensis
ENSNGAG00000001870	Lsm12	81	94.595	ENSSHAG00000014914	LSM12	100	94.304	Sarcophilus_harrisii
ENSNGAG00000001870	Lsm12	100	86.224	ENSSFOG00015009612	lsm12	100	86.224	Scleropages_formosus
ENSNGAG00000001870	Lsm12	100	83.163	ENSSFOG00015020392	lsm12a	100	83.163	Scleropages_formosus
ENSNGAG00000001870	Lsm12	100	85.204	ENSSMAG00000008089	lsm12b	100	85.204	Scophthalmus_maximus
ENSNGAG00000001870	Lsm12	100	86.224	ENSSDUG00000012711	lsm12b	100	86.224	Seriola_dumerili
ENSNGAG00000001870	Lsm12	100	86.224	ENSSLDG00000007404	lsm12b	100	86.224	Seriola_lalandi_dorsalis
ENSNGAG00000001870	Lsm12	81	98.198	ENSSARG00000005537	LSM12	100	99.346	Sorex_araneus
ENSNGAG00000001870	Lsm12	99	94.819	ENSSPUG00000011984	LSM12	99	94.819	Sphenodon_punctatus
ENSNGAG00000001870	Lsm12	100	85.714	ENSSPAG00000017058	lsm12b	100	85.714	Stegastes_partitus
ENSNGAG00000001870	Lsm12	100	100.000	ENSSSCG00000032394	LSM12	100	100.000	Sus_scrofa
ENSNGAG00000001870	Lsm12	100	84.545	ENSTRUG00000007121	lsm12b	100	84.184	Takifugu_rubripes
ENSNGAG00000001870	Lsm12	100	84.694	ENSTNIG00000014436	lsm12b	100	84.694	Tetraodon_nigroviridis
ENSNGAG00000001870	Lsm12	100	96.410	ENSTBEG00000012392	-	100	96.410	Tupaia_belangeri
ENSNGAG00000001870	Lsm12	100	99.487	ENSTBEG00000012523	-	100	99.487	Tupaia_belangeri
ENSNGAG00000001870	Lsm12	100	100.000	ENSTTRG00000010433	LSM12	100	100.000	Tursiops_truncatus
ENSNGAG00000001870	Lsm12	100	100.000	ENSUAMG00000006313	LSM12	100	100.000	Ursus_americanus
ENSNGAG00000001870	Lsm12	81	98.198	ENSUMAG00000012987	LSM12	90	96.835	Ursus_maritimus
ENSNGAG00000001870	Lsm12	100	94.359	ENSVPAG00000011145	LSM12	100	94.359	Vicugna_pacos
ENSNGAG00000001870	Lsm12	100	100.000	ENSVVUG00000017581	LSM12	100	100.000	Vulpes_vulpes
ENSNGAG00000001870	Lsm12	80	83.486	ENSXETG00000003371	lsm12	77	65.000	Xenopus_tropicalis
ENSNGAG00000001870	Lsm12	100	85.455	ENSXCOG00000003994	lsm12b	100	84.184	Xiphophorus_couchianus
ENSNGAG00000001870	Lsm12	100	85.455	ENSXMAG00000020950	lsm12b	100	84.184	Xiphophorus_maculatus