EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSNGAG00000006492 (Gene tree)
Gene ID: 103728745
Gene Symbol: Smarca1
Alias: 5730494M04Rik|Snf2l
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 1
Gene Type: protein_coding
Species: Nannospalax_galili
Status: putative
Strand: Minus strand
Length: 90867 bases
Position: chrKL199338.1:549254-640120
Accession: 103728745
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNGAP00000004823	ResIII	PF04851.15	8.5e-12	1	1
ENSNGAP00000004834	ResIII	PF04851.15	8.9e-12	1	1
ENSNGAP00000004823	DEAD	PF00270.29	2e-06	1	1
ENSNGAP00000004834	DEAD	PF00270.29	2e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNGAT00000008081	-	4027	XM_008826701	ENSNGAP00000004823	1047 (aa)	XP_008824923	UPI0004ED05A0
ENSNGAT00000008099	-	3165	XM_008826699	ENSNGAP00000004834	1054 (aa)	XP_008824921	UPI000819E04A

Gene Model

Click here to download ENSNGAG00000006492's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSNGAG00000006492's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSNGAG00000006492	Smarca1	51	50.000	ENSNGAG00000014049	Hells	64	47.012
ENSNGAG00000006492	Smarca1	55	38.710	ENSNGAG00000000908	Chd1l	62	39.236
ENSNGAG00000006492	Smarca1	90	85.714	ENSNGAG00000000441	Smarca5	91	85.432

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNGAG00000006492	Smarca1	100	97.059	ENSG00000102038	SMARCA1	100	97.059	Homo_sapiens
ENSNGAG00000006492	Smarca1	90	83.652	ENSAPOG00000016035	smarca5	96	84.719	Acanthochromis_polyacanthus
ENSNGAG00000006492	Smarca1	99	95.415	ENSAMEG00000015218	SMARCA1	98	95.415	Ailuropoda_melanoleuca
ENSNGAG00000006492	Smarca1	82	84.838	ENSACIG00000016982	smarca5	97	84.748	Amphilophus_citrinellus
ENSNGAG00000006492	Smarca1	90	83.652	ENSAOCG00000015578	smarca5	93	82.595	Amphiprion_ocellaris
ENSNGAG00000006492	Smarca1	90	83.652	ENSAPEG00000011117	smarca5	97	84.830	Amphiprion_percula
ENSNGAG00000006492	Smarca1	95	80.843	ENSATEG00000012894	smarca5	93	83.648	Anabas_testudineus
ENSNGAG00000006492	Smarca1	91	91.719	ENSAPLG00000013149	SMARCA1	97	92.100	Anas_platyrhynchos
ENSNGAG00000006492	Smarca1	97	89.120	ENSACAG00000011376	SMARCA1	93	91.505	Anolis_carolinensis
ENSNGAG00000006492	Smarca1	97	91.918	ENSANAG00000023098	SMARCA1	96	91.748	Aotus_nancymaae
ENSNGAG00000006492	Smarca1	94	81.320	ENSACLG00000025356	smarca5	93	83.248	Astatotilapia_calliptera
ENSNGAG00000006492	Smarca1	95	80.661	ENSAMXG00000005709	smarca5	92	83.996	Astyanax_mexicanus
ENSNGAG00000006492	Smarca1	87	88.562	ENSAMXG00000011227	smarca1	99	89.543	Astyanax_mexicanus
ENSNGAG00000006492	Smarca1	99	96.289	ENSBTAG00000002292	SMARCA1	100	96.289	Bos_taurus
ENSNGAG00000006492	Smarca1	92	63.099	WBGene00002169	isw-1	94	64.196	Caenorhabditis_elegans
ENSNGAG00000006492	Smarca1	99	96.753	ENSCJAG00000002868	SMARCA1	98	96.753	Callithrix_jacchus
ENSNGAG00000006492	Smarca1	99	87.369	ENSCAFG00000018673	SMARCA1	98	87.369	Canis_familiaris
ENSNGAG00000006492	Smarca1	99	96.442	ENSCAFG00020001751	SMARCA1	98	96.442	Canis_lupus_dingo
ENSNGAG00000006492	Smarca1	100	96.310	ENSCHIG00000009837	SMARCA1	100	96.310	Capra_hircus
ENSNGAG00000006492	Smarca1	95	97.677	ENSTSYG00000004240	SMARCA1	99	97.677	Carlito_syrichta
ENSNGAG00000006492	Smarca1	100	95.351	ENSCPOG00000013601	SMARCA1	95	97.686	Cavia_porcellus
ENSNGAG00000006492	Smarca1	97	93.963	ENSCCAG00000030817	SMARCA1	96	93.786	Cebus_capucinus
ENSNGAG00000006492	Smarca1	100	96.657	ENSCATG00000015921	SMARCA1	100	96.657	Cercocebus_atys
ENSNGAG00000006492	Smarca1	100	94.334	ENSCLAG00000002171	SMARCA1	100	94.334	Chinchilla_lanigera
ENSNGAG00000006492	Smarca1	99	96.731	ENSCSAG00000008460	SMARCA1	98	96.731	Chlorocebus_sabaeus
ENSNGAG00000006492	Smarca1	93	92.119	ENSCPBG00000001146	SMARCA1	92	92.119	Chrysemys_picta_bellii
ENSNGAG00000006492	Smarca1	91	73.320	ENSCING00000004110	swi/snf	95	73.320	Ciona_intestinalis
ENSNGAG00000006492	Smarca1	91	73.201	ENSCSAVG00000004620	-	100	73.719	Ciona_savignyi
ENSNGAG00000006492	Smarca1	99	96.944	ENSCANG00000007183	SMARCA1	98	96.944	Colobus_angolensis_palliatus
ENSNGAG00000006492	Smarca1	100	96.493	ENSCGRG00001010776	Smarca1	100	96.493	Cricetulus_griseus_chok1gshd
ENSNGAG00000006492	Smarca1	95	96.806	ENSCGRG00000015301	Smarca1	99	96.806	Cricetulus_griseus_crigri
ENSNGAG00000006492	Smarca1	92	83.229	ENSCSEG00000000328	smarca5	93	82.595	Cynoglossus_semilaevis
ENSNGAG00000006492	Smarca1	91	82.408	ENSCVAG00000008668	smarca5	97	84.242	Cyprinodon_variegatus
ENSNGAG00000006492	Smarca1	93	85.385	ENSDARG00000012776	smarca1	96	85.385	Danio_rerio
ENSNGAG00000006492	Smarca1	93	81.231	ENSDARG00000052348	smarca5	93	82.577	Danio_rerio
ENSNGAG00000006492	Smarca1	99	94.044	ENSDNOG00000004315	SMARCA1	100	94.044	Dasypus_novemcinctus
ENSNGAG00000006492	Smarca1	100	95.224	ENSDORG00000009270	Smarca1	98	95.146	Dipodomys_ordii
ENSNGAG00000006492	Smarca1	91	73.438	FBgn0011604	Iswi	94	72.995	Drosophila_melanogaster
ENSNGAG00000006492	Smarca1	79	93.750	ENSETEG00000017426	SMARCA1	86	93.750	Echinops_telfairi
ENSNGAG00000006492	Smarca1	90	80.932	ENSEBUG00000001239	smarca5	95	80.849	Eptatretus_burgeri
ENSNGAG00000006492	Smarca1	95	92.843	ENSEASG00005008218	SMARCA1	97	93.443	Equus_asinus_asinus
ENSNGAG00000006492	Smarca1	99	96.165	ENSECAG00000012106	SMARCA1	98	96.165	Equus_caballus
ENSNGAG00000006492	Smarca1	77	97.351	ENSEEUG00000014927	SMARCA1	84	97.351	Erinaceus_europaeus
ENSNGAG00000006492	Smarca1	93	86.137	ENSELUG00000010515	smarca1	96	86.877	Esox_lucius
ENSNGAG00000006492	Smarca1	99	96.944	ENSFCAG00000018496	SMARCA1	98	96.944	Felis_catus
ENSNGAG00000006492	Smarca1	87	92.442	ENSFALG00000000209	SMARCA1	98	92.442	Ficedula_albicollis
ENSNGAG00000006492	Smarca1	95	97.695	ENSFDAG00000009818	SMARCA1	98	97.695	Fukomys_damarensis
ENSNGAG00000006492	Smarca1	91	83.037	ENSFHEG00000007687	smarca5	91	85.146	Fundulus_heteroclitus
ENSNGAG00000006492	Smarca1	94	90.539	ENSGALG00000008431	SMARCA1	96	91.522	Gallus_gallus
ENSNGAG00000006492	Smarca1	91	82.827	ENSGAFG00000017731	smarca5	93	82.698	Gambusia_affinis
ENSNGAG00000006492	Smarca1	91	92.827	ENSGAGG00000023575	SMARCA1	98	92.827	Gopherus_agassizii
ENSNGAG00000006492	Smarca1	71	96.000	ENSGGOG00000012841	-	95	96.000	Gorilla_gorilla
ENSNGAG00000006492	Smarca1	100	95.825	ENSHGLG00000003080	SMARCA1	100	95.825	Heterocephalus_glaber_female
ENSNGAG00000006492	Smarca1	94	96.755	ENSHGLG00100001102	SMARCA1	98	96.755	Heterocephalus_glaber_male
ENSNGAG00000006492	Smarca1	90	83.686	ENSHCOG00000005458	smarca5	93	82.904	Hippocampus_comes
ENSNGAG00000006492	Smarca1	94	81.155	ENSIPUG00000005229	SMARCA5	95	82.834	Ictalurus_punctatus
ENSNGAG00000006492	Smarca1	95	85.628	ENSIPUG00000016905	Smarca1	98	87.047	Ictalurus_punctatus
ENSNGAG00000006492	Smarca1	100	96.110	ENSSTOG00000014524	SMARCA1	100	96.110	Ictidomys_tridecemlineatus
ENSNGAG00000006492	Smarca1	100	96.084	ENSJJAG00000002593	Smarca1	100	96.084	Jaculus_jaculus
ENSNGAG00000006492	Smarca1	90	83.686	ENSKMAG00000003777	smarca5	93	82.904	Kryptolebias_marmoratus
ENSNGAG00000006492	Smarca1	91	82.741	ENSLBEG00000018112	smarca5	93	82.698	Labrus_bergylta
ENSNGAG00000006492	Smarca1	89	82.799	ENSLBEG00000013295	SMARCA1	100	84.450	Labrus_bergylta
ENSNGAG00000006492	Smarca1	95	88.732	ENSLACG00000016697	SMARCA1	96	89.694	Latimeria_chalumnae
ENSNGAG00000006492	Smarca1	92	89.293	ENSLOCG00000014591	smarca1	95	89.150	Lepisosteus_oculatus
ENSNGAG00000006492	Smarca1	94	96.643	ENSLAFG00000000896	SMARCA1	100	96.367	Loxodonta_africana
ENSNGAG00000006492	Smarca1	100	96.657	ENSMFAG00000002117	SMARCA1	100	96.657	Macaca_fascicularis
ENSNGAG00000006492	Smarca1	100	96.657	ENSMMUG00000008818	SMARCA1	100	96.657	Macaca_mulatta
ENSNGAG00000006492	Smarca1	100	96.657	ENSMNEG00000041768	SMARCA1	100	96.657	Macaca_nemestrina
ENSNGAG00000006492	Smarca1	99	96.944	ENSMLEG00000043198	SMARCA1	98	96.944	Mandrillus_leucophaeus
ENSNGAG00000006492	Smarca1	91	83.037	ENSMAMG00000014294	smarca5	93	83.007	Mastacembelus_armatus
ENSNGAG00000006492	Smarca1	94	81.320	ENSMZEG00005009369	smarca5	93	83.248	Maylandia_zebra
ENSNGAG00000006492	Smarca1	92	91.426	ENSMGAG00000007042	SMARCA1	97	91.150	Meleagris_gallopavo
ENSNGAG00000006492	Smarca1	100	97.059	ENSMAUG00000008133	Smarca1	100	97.059	Mesocricetus_auratus
ENSNGAG00000006492	Smarca1	99	96.848	ENSMICG00000015768	SMARCA1	98	96.848	Microcebus_murinus
ENSNGAG00000006492	Smarca1	100	96.774	ENSMOCG00000009464	Smarca1	100	96.774	Microtus_ochrogaster
ENSNGAG00000006492	Smarca1	91	80.962	ENSMMOG00000005547	smarca5	97	80.947	Mola_mola
ENSNGAG00000006492	Smarca1	97	88.791	ENSMODG00000013187	-	94	91.020	Monodelphis_domestica
ENSNGAG00000006492	Smarca1	92	82.165	ENSMALG00000002081	smarca5	97	81.365	Monopterus_albus
ENSNGAG00000006492	Smarca1	100	97.039	MGP_CAROLIEiJ_G0033034	Smarca1	100	97.039	Mus_caroli
ENSNGAG00000006492	Smarca1	100	97.039	ENSMUSG00000031099	Smarca1	100	97.039	Mus_musculus
ENSNGAG00000006492	Smarca1	100	97.135	MGP_PahariEiJ_G0031579	Smarca1	100	97.135	Mus_pahari
ENSNGAG00000006492	Smarca1	100	97.230	MGP_SPRETEiJ_G0034192	Smarca1	100	97.230	Mus_spretus
ENSNGAG00000006492	Smarca1	99	96.753	ENSMPUG00000017423	SMARCA1	92	96.753	Mustela_putorius_furo
ENSNGAG00000006492	Smarca1	98	93.786	ENSMLUG00000029614	SMARCA1	96	93.023	Myotis_lucifugus
ENSNGAG00000006492	Smarca1	91	83.246	ENSNBRG00000004463	smarca5	97	83.213	Neolamprologus_brichardi
ENSNGAG00000006492	Smarca1	99	96.275	ENSNLEG00000015179	SMARCA1	99	97.169	Nomascus_leucogenys
ENSNGAG00000006492	Smarca1	90	81.857	ENSMEUG00000008819	SMARCA1	99	81.857	Notamacropus_eugenii
ENSNGAG00000006492	Smarca1	98	95.938	ENSODEG00000012163	SMARCA1	98	95.564	Octodon_degus
ENSNGAG00000006492	Smarca1	94	81.421	ENSONIG00000009993	smarca5	93	83.350	Oreochromis_niloticus
ENSNGAG00000006492	Smarca1	91	93.256	ENSOANG00000002862	SMARCA1	98	93.256	Ornithorhynchus_anatinus
ENSNGAG00000006492	Smarca1	99	95.192	ENSOCUG00000001047	SMARCA1	98	95.192	Oryctolagus_cuniculus
ENSNGAG00000006492	Smarca1	90	83.475	ENSORLG00000021998	smarca5	93	82.698	Oryzias_latipes
ENSNGAG00000006492	Smarca1	90	83.581	ENSORLG00020017679	smarca5	94	82.227	Oryzias_latipes_hni
ENSNGAG00000006492	Smarca1	90	83.475	ENSORLG00015017210	smarca5	93	82.595	Oryzias_latipes_hsok
ENSNGAG00000006492	Smarca1	90	83.475	ENSOMEG00000000086	smarca5	93	82.595	Oryzias_melastigma
ENSNGAG00000006492	Smarca1	100	96.774	ENSOGAG00000004399	SMARCA1	100	96.774	Otolemur_garnettii
ENSNGAG00000006492	Smarca1	94	96.465	ENSOARG00000014638	SMARCA1	98	97.505	Ovis_aries
ENSNGAG00000006492	Smarca1	99	97.039	ENSPPAG00000034647	SMARCA1	98	97.039	Pan_paniscus
ENSNGAG00000006492	Smarca1	99	96.944	ENSPPRG00000008929	SMARCA1	98	96.944	Panthera_pardus
ENSNGAG00000006492	Smarca1	94	96.080	ENSPTIG00000000915	SMARCA1	96	96.080	Panthera_tigris_altaica
ENSNGAG00000006492	Smarca1	100	96.657	ENSPTRG00000049876	SMARCA1	100	96.657	Pan_troglodytes
ENSNGAG00000006492	Smarca1	99	97.039	ENSPANG00000003871	SMARCA1	98	97.039	Papio_anubis
ENSNGAG00000006492	Smarca1	91	87.303	ENSPKIG00000013411	smarca1	96	87.303	Paramormyrops_kingsleyae
ENSNGAG00000006492	Smarca1	93	91.768	ENSPSIG00000010101	SMARCA1	98	92.616	Pelodiscus_sinensis
ENSNGAG00000006492	Smarca1	100	97.913	ENSPEMG00000017503	Smarca1	100	97.913	Peromyscus_maniculatus_bairdii
ENSNGAG00000006492	Smarca1	97	89.391	ENSPCIG00000015460	SMARCA1	97	91.641	Phascolarctos_cinereus
ENSNGAG00000006492	Smarca1	90	83.686	ENSPFOG00000007649	smarca5	93	82.698	Poecilia_formosa
ENSNGAG00000006492	Smarca1	90	83.686	ENSPLAG00000003363	smarca5	93	82.698	Poecilia_latipinna
ENSNGAG00000006492	Smarca1	90	83.581	ENSPMEG00000019849	smarca5	94	82.293	Poecilia_mexicana
ENSNGAG00000006492	Smarca1	90	83.581	ENSPREG00000023250	smarca5	94	82.293	Poecilia_reticulata
ENSNGAG00000006492	Smarca1	99	93.219	ENSPPYG00000020703	SMARCA1	98	93.219	Pongo_abelii
ENSNGAG00000006492	Smarca1	78	90.909	ENSPCOG00000020722	SMARCA1	94	92.489	Propithecus_coquereli
ENSNGAG00000006492	Smarca1	92	96.556	ENSPVAG00000003805	SMARCA1	93	96.556	Pteropus_vampyrus
ENSNGAG00000006492	Smarca1	56	83.562	ENSPNYG00000012299	smarca5	92	82.400	Pundamilia_nyererei
ENSNGAG00000006492	Smarca1	99	96.731	ENSRNOG00000003762	Smarca1	98	96.731	Rattus_norvegicus
ENSNGAG00000006492	Smarca1	99	96.944	ENSRROG00000034167	SMARCA1	98	96.944	Rhinopithecus_roxellana
ENSNGAG00000006492	Smarca1	95	97.015	ENSSBOG00000020641	SMARCA1	98	98.129	Saimiri_boliviensis_boliviensis
ENSNGAG00000006492	Smarca1	91	86.555	ENSSHAG00000013518	SMARCA1	97	86.555	Sarcophilus_harrisii
ENSNGAG00000006492	Smarca1	93	86.939	ENSSFOG00015009043	smarca1	96	87.576	Scleropages_formosus
ENSNGAG00000006492	Smarca1	92	82.690	ENSSFOG00015016794	smarca5	98	83.949	Scleropages_formosus
ENSNGAG00000006492	Smarca1	91	82.791	ENSSMAG00000004801	smarca5	93	82.748	Scophthalmus_maximus
ENSNGAG00000006492	Smarca1	91	82.723	ENSSDUG00000020690	smarca5	94	82.698	Seriola_dumerili
ENSNGAG00000006492	Smarca1	91	82.723	ENSSLDG00000025190	smarca5	94	82.698	Seriola_lalandi_dorsalis
ENSNGAG00000006492	Smarca1	81	97.518	ENSSARG00000000842	SMARCA1	92	90.399	Sorex_araneus
ENSNGAG00000006492	Smarca1	95	90.404	ENSSPUG00000000590	SMARCA1	95	90.660	Sphenodon_punctatus
ENSNGAG00000006492	Smarca1	91	82.723	ENSSPAG00000002894	smarca5	94	84.719	Stegastes_partitus
ENSNGAG00000006492	Smarca1	99	95.977	ENSSSCG00000012649	SMARCA1	100	95.977	Sus_scrofa
ENSNGAG00000006492	Smarca1	91	91.614	ENSTGUG00000003899	-	97	91.996	Taeniopygia_guttata
ENSNGAG00000006492	Smarca1	91	82.932	ENSTRUG00000014094	smarca5	93	82.801	Takifugu_rubripes
ENSNGAG00000006492	Smarca1	90	83.015	ENSTNIG00000017717	smarca5	92	82.080	Tetraodon_nigroviridis
ENSNGAG00000006492	Smarca1	94	91.064	ENSTBEG00000014973	SMARCA1	100	91.064	Tupaia_belangeri
ENSNGAG00000006492	Smarca1	94	94.848	ENSTTRG00000006168	SMARCA1	100	94.848	Tursiops_truncatus
ENSNGAG00000006492	Smarca1	99	95.865	ENSUAMG00000020201	SMARCA1	98	95.865	Ursus_americanus
ENSNGAG00000006492	Smarca1	95	92.836	ENSUMAG00000004073	SMARCA1	99	97.375	Ursus_maritimus
ENSNGAG00000006492	Smarca1	79	99.365	ENSVPAG00000010492	-	86	99.365	Vicugna_pacos
ENSNGAG00000006492	Smarca1	94	97.556	ENSVVUG00000008878	SMARCA1	100	97.715	Vulpes_vulpes
ENSNGAG00000006492	Smarca1	92	89.200	ENSXETG00000001526	smarca1	98	89.048	Xenopus_tropicalis
ENSNGAG00000006492	Smarca1	91	82.723	ENSXCOG00000011170	smarca5	96	82.595	Xiphophorus_couchianus
ENSNGAG00000006492	Smarca1	91	82.723	ENSXMAG00000009678	smarca5	98	83.769	Xiphophorus_maculatus