EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSNGAG00000006833 (Gene tree)
Gene ID: 103741079
Gene Symbol: Smndc1
Alias: 2410004J23Rik|4933440I19Rik
Full Name: survival motor neuron domain containing 1
Gene Type: protein_coding
Species: Nannospalax_galili
Status: putative
Strand: Minus strand
Length: 11232 bases
Position: chrKL202372.1:848660-859891
Accession: 103741079
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNGAP00000004942	SMN	PF06003.12	5.1e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNGAT00000008304	-	1805	XM_008841765	ENSNGAP00000004942	238 (aa)	XP_008839987	UPI0004ED07B9

Gene Model

Click here to download ENSNGAG00000006833's gene model file

Pathways

Pathway ID	Pathway Name	Source
ngi03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSNGAG00000006833's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNGAG00000006833	Smndc1	100	98.739	ENSG00000119953	SMNDC1	100	98.739	Homo_sapiens
ENSNGAG00000006833	Smndc1	100	76.987	ENSAPOG00000021772	smndc1	100	76.987	Acanthochromis_polyacanthus
ENSNGAG00000006833	Smndc1	100	99.160	ENSAMEG00000005251	SMNDC1	100	99.160	Ailuropoda_melanoleuca
ENSNGAG00000006833	Smndc1	100	76.050	ENSACIG00000004819	smndc1	100	76.050	Amphilophus_citrinellus
ENSNGAG00000006833	Smndc1	100	76.569	ENSAOCG00000017869	smndc1	100	76.569	Amphiprion_ocellaris
ENSNGAG00000006833	Smndc1	100	76.569	ENSAPEG00000007752	smndc1	100	76.569	Amphiprion_percula
ENSNGAG00000006833	Smndc1	100	76.471	ENSATEG00000006830	smndc1	100	76.471	Anabas_testudineus
ENSNGAG00000006833	Smndc1	83	96.465	ENSAPLG00000004322	SMNDC1	100	96.465	Anas_platyrhynchos
ENSNGAG00000006833	Smndc1	100	95.378	ENSACAG00000005983	SMNDC1	100	95.378	Anolis_carolinensis
ENSNGAG00000006833	Smndc1	100	99.160	ENSANAG00000032875	SMNDC1	100	99.160	Aotus_nancymaae
ENSNGAG00000006833	Smndc1	100	76.891	ENSACLG00000016360	smndc1	100	76.891	Astatotilapia_calliptera
ENSNGAG00000006833	Smndc1	100	77.406	ENSAMXG00000020310	smndc1	100	77.406	Astyanax_mexicanus
ENSNGAG00000006833	Smndc1	100	98.739	ENSBTAG00000000551	SMNDC1	100	98.739	Bos_taurus
ENSNGAG00000006833	Smndc1	100	99.160	ENSCJAG00000018624	SMNDC1	100	99.160	Callithrix_jacchus
ENSNGAG00000006833	Smndc1	100	99.160	ENSCAFG00000010720	SMNDC1	100	99.160	Canis_familiaris
ENSNGAG00000006833	Smndc1	100	99.160	ENSCAFG00020011913	SMNDC1	100	99.160	Canis_lupus_dingo
ENSNGAG00000006833	Smndc1	100	98.739	ENSCHIG00000010604	SMNDC1	100	98.739	Capra_hircus
ENSNGAG00000006833	Smndc1	100	99.160	ENSTSYG00000026454	SMNDC1	100	99.160	Carlito_syrichta
ENSNGAG00000006833	Smndc1	84	98.010	ENSCAPG00000009132	SMNDC1	100	98.010	Cavia_aperea
ENSNGAG00000006833	Smndc1	100	98.319	ENSCPOG00000031666	SMNDC1	100	98.319	Cavia_porcellus
ENSNGAG00000006833	Smndc1	100	99.160	ENSCCAG00000021793	SMNDC1	100	99.160	Cebus_capucinus
ENSNGAG00000006833	Smndc1	100	98.739	ENSCATG00000035910	SMNDC1	100	98.739	Cercocebus_atys
ENSNGAG00000006833	Smndc1	100	98.319	ENSCLAG00000002838	SMNDC1	100	98.319	Chinchilla_lanigera
ENSNGAG00000006833	Smndc1	100	99.160	ENSCSAG00000005169	SMNDC1	100	99.160	Chlorocebus_sabaeus
ENSNGAG00000006833	Smndc1	81	98.446	ENSCHOG00000002936	SMNDC1	100	98.446	Choloepus_hoffmanni
ENSNGAG00000006833	Smndc1	100	97.479	ENSCPBG00000012837	SMNDC1	100	97.479	Chrysemys_picta_bellii
ENSNGAG00000006833	Smndc1	100	91.176	ENSCANG00000034620	-	100	91.176	Colobus_angolensis_palliatus
ENSNGAG00000006833	Smndc1	100	99.160	ENSCANG00000031720	-	100	99.160	Colobus_angolensis_palliatus
ENSNGAG00000006833	Smndc1	100	78.151	ENSCANG00000036994	-	100	78.151	Colobus_angolensis_palliatus
ENSNGAG00000006833	Smndc1	100	98.319	ENSCGRG00001012973	Smndc1	100	98.319	Cricetulus_griseus_chok1gshd
ENSNGAG00000006833	Smndc1	100	98.319	ENSCGRG00000012396	Smndc1	100	98.319	Cricetulus_griseus_crigri
ENSNGAG00000006833	Smndc1	100	75.210	ENSCSEG00000015621	smndc1	100	75.210	Cynoglossus_semilaevis
ENSNGAG00000006833	Smndc1	100	76.891	ENSCVAG00000020432	smndc1	100	76.891	Cyprinodon_variegatus
ENSNGAG00000006833	Smndc1	100	79.412	ENSDARG00000056235	smndc1	100	79.412	Danio_rerio
ENSNGAG00000006833	Smndc1	100	99.160	ENSDNOG00000016387	SMNDC1	83	99.160	Dasypus_novemcinctus
ENSNGAG00000006833	Smndc1	100	99.160	ENSDORG00000023715	Smndc1	100	99.160	Dipodomys_ordii
ENSNGAG00000006833	Smndc1	95	41.434	FBgn0039977	CG17454	98	42.629	Drosophila_melanogaster
ENSNGAG00000006833	Smndc1	100	71.369	ENSEBUG00000010929	smndc1	100	71.369	Eptatretus_burgeri
ENSNGAG00000006833	Smndc1	100	99.160	ENSEASG00005014930	SMNDC1	100	99.160	Equus_asinus_asinus
ENSNGAG00000006833	Smndc1	100	99.160	ENSECAG00000029973	SMNDC1	100	99.160	Equus_caballus
ENSNGAG00000006833	Smndc1	83	70.202	ENSEEUG00000013407	-	100	70.202	Erinaceus_europaeus
ENSNGAG00000006833	Smndc1	100	77.311	ENSELUG00000000227	smndc1	100	77.311	Esox_lucius
ENSNGAG00000006833	Smndc1	100	99.160	ENSFCAG00000027353	SMNDC1	100	99.160	Felis_catus
ENSNGAG00000006833	Smndc1	100	96.639	ENSFALG00000002306	SMNDC1	100	96.639	Ficedula_albicollis
ENSNGAG00000006833	Smndc1	100	97.899	ENSFDAG00000006468	SMNDC1	100	97.899	Fukomys_damarensis
ENSNGAG00000006833	Smndc1	100	76.471	ENSFHEG00000020150	smndc1	100	76.471	Fundulus_heteroclitus
ENSNGAG00000006833	Smndc1	100	76.050	ENSGMOG00000016585	smndc1	100	76.050	Gadus_morhua
ENSNGAG00000006833	Smndc1	100	96.639	ENSGALG00000008561	SMNDC1	100	96.639	Gallus_gallus
ENSNGAG00000006833	Smndc1	100	75.630	ENSGAFG00000011582	smndc1	100	75.630	Gambusia_affinis
ENSNGAG00000006833	Smndc1	100	76.569	ENSGACG00000009468	smndc1	100	76.569	Gasterosteus_aculeatus
ENSNGAG00000006833	Smndc1	100	97.479	ENSGAGG00000024547	SMNDC1	100	97.479	Gopherus_agassizii
ENSNGAG00000006833	Smndc1	100	99.160	ENSGGOG00000010071	SMNDC1	100	99.160	Gorilla_gorilla
ENSNGAG00000006833	Smndc1	100	76.891	ENSHBUG00000017596	smndc1	100	76.891	Haplochromis_burtoni
ENSNGAG00000006833	Smndc1	100	97.899	ENSHGLG00000013390	-	100	97.899	Heterocephalus_glaber_female
ENSNGAG00000006833	Smndc1	100	68.033	ENSHGLG00000001157	-	100	64.898	Heterocephalus_glaber_female
ENSNGAG00000006833	Smndc1	100	76.230	ENSHGLG00100004278	-	100	75.820	Heterocephalus_glaber_male
ENSNGAG00000006833	Smndc1	100	97.899	ENSHGLG00100004814	-	100	97.899	Heterocephalus_glaber_male
ENSNGAG00000006833	Smndc1	100	74.895	ENSHCOG00000000783	smndc1	100	74.895	Hippocampus_comes
ENSNGAG00000006833	Smndc1	100	77.731	ENSIPUG00000004217	smndc1	100	77.731	Ictalurus_punctatus
ENSNGAG00000006833	Smndc1	100	99.160	ENSSTOG00000006088	SMNDC1	100	99.160	Ictidomys_tridecemlineatus
ENSNGAG00000006833	Smndc1	100	98.319	ENSJJAG00000019974	Smndc1	100	98.319	Jaculus_jaculus
ENSNGAG00000006833	Smndc1	100	75.630	ENSKMAG00000020134	smndc1	100	75.630	Kryptolebias_marmoratus
ENSNGAG00000006833	Smndc1	100	75.210	ENSLBEG00000004598	smndc1	100	75.210	Labrus_bergylta
ENSNGAG00000006833	Smndc1	100	83.613	ENSLACG00000007784	SMNDC1	100	83.613	Latimeria_chalumnae
ENSNGAG00000006833	Smndc1	100	83.613	ENSLOCG00000012355	smndc1	100	83.613	Lepisosteus_oculatus
ENSNGAG00000006833	Smndc1	100	98.739	ENSLAFG00000014353	SMNDC1	100	98.739	Loxodonta_africana
ENSNGAG00000006833	Smndc1	100	81.092	ENSMFAG00000038381	-	100	81.092	Macaca_fascicularis
ENSNGAG00000006833	Smndc1	100	99.160	ENSMFAG00000002433	-	100	99.160	Macaca_fascicularis
ENSNGAG00000006833	Smndc1	100	81.092	ENSMMUG00000045875	-	100	81.092	Macaca_mulatta
ENSNGAG00000006833	Smndc1	100	99.160	ENSMMUG00000007775	SMNDC1	100	99.160	Macaca_mulatta
ENSNGAG00000006833	Smndc1	100	87.395	ENSMNEG00000033853	-	100	87.395	Macaca_nemestrina
ENSNGAG00000006833	Smndc1	100	99.160	ENSMNEG00000042963	-	100	99.160	Macaca_nemestrina
ENSNGAG00000006833	Smndc1	100	92.887	ENSMLEG00000040236	SMNDC1	100	92.469	Mandrillus_leucophaeus
ENSNGAG00000006833	Smndc1	89	72.770	ENSMAMG00000018233	smndc1	87	72.770	Mastacembelus_armatus
ENSNGAG00000006833	Smndc1	100	76.891	ENSMZEG00005027510	smndc1	100	76.891	Maylandia_zebra
ENSNGAG00000006833	Smndc1	84	96.000	ENSMGAG00000010777	SMNDC1	84	96.000	Meleagris_gallopavo
ENSNGAG00000006833	Smndc1	99	80.169	ENSMAUG00000005459	-	93	80.169	Mesocricetus_auratus
ENSNGAG00000006833	Smndc1	100	99.160	ENSMAUG00000012243	-	100	99.160	Mesocricetus_auratus
ENSNGAG00000006833	Smndc1	100	85.714	ENSMICG00000031640	-	100	85.714	Microcebus_murinus
ENSNGAG00000006833	Smndc1	100	98.319	ENSMICG00000027336	-	100	98.319	Microcebus_murinus
ENSNGAG00000006833	Smndc1	100	98.739	ENSMOCG00000002458	Smndc1	100	98.739	Microtus_ochrogaster
ENSNGAG00000006833	Smndc1	100	75.630	ENSMMOG00000008856	smndc1	100	75.630	Mola_mola
ENSNGAG00000006833	Smndc1	100	98.739	ENSMODG00000010542	SMNDC1	100	98.739	Monodelphis_domestica
ENSNGAG00000006833	Smndc1	100	76.891	ENSMALG00000017598	smndc1	100	76.891	Monopterus_albus
ENSNGAG00000006833	Smndc1	100	97.899	MGP_CAROLIEiJ_G0023072	Smndc1	100	97.899	Mus_caroli
ENSNGAG00000006833	Smndc1	100	98.319	ENSMUSG00000025024	Smndc1	100	98.319	Mus_musculus
ENSNGAG00000006833	Smndc1	100	98.319	MGP_PahariEiJ_G0014560	Smndc1	100	98.319	Mus_pahari
ENSNGAG00000006833	Smndc1	100	98.319	MGP_SPRETEiJ_G0023993	Smndc1	100	98.319	Mus_spretus
ENSNGAG00000006833	Smndc1	100	99.160	ENSMPUG00000002089	SMNDC1	100	99.160	Mustela_putorius_furo
ENSNGAG00000006833	Smndc1	100	98.319	ENSMLUG00000016007	SMNDC1	100	98.319	Myotis_lucifugus
ENSNGAG00000006833	Smndc1	100	76.471	ENSNBRG00000017089	smndc1	100	76.471	Neolamprologus_brichardi
ENSNGAG00000006833	Smndc1	100	99.160	ENSNLEG00000015471	SMNDC1	100	99.160	Nomascus_leucogenys
ENSNGAG00000006833	Smndc1	82	58.000	ENSMEUG00000010120	-	99	58.500	Notamacropus_eugenii
ENSNGAG00000006833	Smndc1	100	98.319	ENSOPRG00000015348	SMNDC1	100	98.319	Ochotona_princeps
ENSNGAG00000006833	Smndc1	100	69.328	ENSODEG00000007594	-	100	66.387	Octodon_degus
ENSNGAG00000006833	Smndc1	100	76.471	ENSONIG00000000434	smndc1	100	76.471	Oreochromis_niloticus
ENSNGAG00000006833	Smndc1	100	97.479	ENSOANG00000001598	SMNDC1	100	97.479	Ornithorhynchus_anatinus
ENSNGAG00000006833	Smndc1	100	74.790	ENSOCUG00000012274	-	100	76.471	Oryctolagus_cuniculus
ENSNGAG00000006833	Smndc1	100	98.319	ENSOCUG00000008145	-	100	98.319	Oryctolagus_cuniculus
ENSNGAG00000006833	Smndc1	100	76.050	ENSORLG00000005934	smndc1	95	76.050	Oryzias_latipes
ENSNGAG00000006833	Smndc1	100	76.050	ENSORLG00020008796	smndc1	95	76.050	Oryzias_latipes_hni
ENSNGAG00000006833	Smndc1	100	76.050	ENSORLG00015013666	smndc1	100	76.050	Oryzias_latipes_hsok
ENSNGAG00000006833	Smndc1	100	77.731	ENSOMEG00000007590	smndc1	100	77.731	Oryzias_melastigma
ENSNGAG00000006833	Smndc1	100	98.739	ENSOGAG00000000571	SMNDC1	100	98.739	Otolemur_garnettii
ENSNGAG00000006833	Smndc1	100	98.739	ENSOARG00000009500	SMNDC1	100	98.739	Ovis_aries
ENSNGAG00000006833	Smndc1	100	99.160	ENSPPAG00000027815	SMNDC1	100	99.160	Pan_paniscus
ENSNGAG00000006833	Smndc1	100	99.160	ENSPPRG00000013749	SMNDC1	100	99.160	Panthera_pardus
ENSNGAG00000006833	Smndc1	100	99.160	ENSPTIG00000011451	SMNDC1	100	99.160	Panthera_tigris_altaica
ENSNGAG00000006833	Smndc1	100	99.160	ENSPTRG00000002937	SMNDC1	100	99.160	Pan_troglodytes
ENSNGAG00000006833	Smndc1	100	93.277	ENSPANG00000031346	-	100	93.277	Papio_anubis
ENSNGAG00000006833	Smndc1	100	99.160	ENSPANG00000020805	-	100	99.160	Papio_anubis
ENSNGAG00000006833	Smndc1	100	79.832	ENSPKIG00000017164	smndc1	100	79.832	Paramormyrops_kingsleyae
ENSNGAG00000006833	Smndc1	100	97.059	ENSPSIG00000012257	SMNDC1	100	97.059	Pelodiscus_sinensis
ENSNGAG00000006833	Smndc1	100	73.222	ENSPMGG00000015651	smndc1	100	73.222	Periophthalmus_magnuspinnatus
ENSNGAG00000006833	Smndc1	100	99.160	ENSPEMG00000022058	Smndc1	100	99.160	Peromyscus_maniculatus_bairdii
ENSNGAG00000006833	Smndc1	100	68.033	ENSPMAG00000007705	smndc1	100	68.033	Petromyzon_marinus
ENSNGAG00000006833	Smndc1	97	62.609	ENSPCIG00000009693	-	100	62.609	Phascolarctos_cinereus
ENSNGAG00000006833	Smndc1	100	98.739	ENSPCIG00000018419	SMNDC1	100	98.739	Phascolarctos_cinereus
ENSNGAG00000006833	Smndc1	100	76.050	ENSPFOG00000017113	smndc1	100	76.050	Poecilia_formosa
ENSNGAG00000006833	Smndc1	100	76.471	ENSPLAG00000010372	smndc1	100	76.471	Poecilia_latipinna
ENSNGAG00000006833	Smndc1	100	76.471	ENSPMEG00000012288	smndc1	100	76.471	Poecilia_mexicana
ENSNGAG00000006833	Smndc1	100	75.630	ENSPREG00000012279	smndc1	100	75.630	Poecilia_reticulata
ENSNGAG00000006833	Smndc1	100	99.160	ENSPPYG00000002643	SMNDC1	100	99.160	Pongo_abelii
ENSNGAG00000006833	Smndc1	81	98.446	ENSPCAG00000016183	SMNDC1	100	98.446	Procavia_capensis
ENSNGAG00000006833	Smndc1	100	98.739	ENSPCOG00000024343	SMNDC1	100	98.739	Propithecus_coquereli
ENSNGAG00000006833	Smndc1	100	75.210	ENSPVAG00000004368	SMNDC1	100	75.210	Pteropus_vampyrus
ENSNGAG00000006833	Smndc1	98	67.521	ENSPNYG00000024093	smndc1	98	67.521	Pundamilia_nyererei
ENSNGAG00000006833	Smndc1	100	76.471	ENSPNAG00000025285	smndc1	100	76.471	Pygocentrus_nattereri
ENSNGAG00000006833	Smndc1	100	97.899	ENSRNOG00000014833	Smndc1	100	97.899	Rattus_norvegicus
ENSNGAG00000006833	Smndc1	100	98.739	ENSRBIG00000000224	-	100	98.739	Rhinopithecus_bieti
ENSNGAG00000006833	Smndc1	100	82.773	ENSRBIG00000032452	-	100	82.773	Rhinopithecus_bieti
ENSNGAG00000006833	Smndc1	100	99.160	ENSRROG00000044992	-	100	99.160	Rhinopithecus_roxellana
ENSNGAG00000006833	Smndc1	100	83.193	ENSRROG00000039125	-	100	83.193	Rhinopithecus_roxellana
ENSNGAG00000006833	Smndc1	100	99.160	ENSSBOG00000026789	SMNDC1	100	99.160	Saimiri_boliviensis_boliviensis
ENSNGAG00000006833	Smndc1	100	98.739	ENSSHAG00000015189	SMNDC1	100	98.739	Sarcophilus_harrisii
ENSNGAG00000006833	Smndc1	100	79.412	ENSSFOG00015008311	smndc1	100	79.412	Scleropages_formosus
ENSNGAG00000006833	Smndc1	100	76.471	ENSSMAG00000020118	smndc1	100	76.471	Scophthalmus_maximus
ENSNGAG00000006833	Smndc1	100	76.891	ENSSDUG00000015330	smndc1	100	76.891	Seriola_dumerili
ENSNGAG00000006833	Smndc1	100	76.891	ENSSLDG00000017325	smndc1	100	76.891	Seriola_lalandi_dorsalis
ENSNGAG00000006833	Smndc1	100	98.319	ENSSARG00000006063	SMNDC1	100	98.319	Sorex_araneus
ENSNGAG00000006833	Smndc1	100	96.639	ENSSPUG00000004574	SMNDC1	100	96.639	Sphenodon_punctatus
ENSNGAG00000006833	Smndc1	100	76.569	ENSSPAG00000000338	smndc1	100	76.569	Stegastes_partitus
ENSNGAG00000006833	Smndc1	100	98.739	ENSSSCG00000030507	SMNDC1	100	98.739	Sus_scrofa
ENSNGAG00000006833	Smndc1	100	96.639	ENSTGUG00000010599	SMNDC1	100	96.639	Taeniopygia_guttata
ENSNGAG00000006833	Smndc1	100	73.529	ENSTRUG00000023281	smndc1	100	73.529	Takifugu_rubripes
ENSNGAG00000006833	Smndc1	100	74.370	ENSTNIG00000013331	smndc1	100	74.370	Tetraodon_nigroviridis
ENSNGAG00000006833	Smndc1	100	98.739	ENSTBEG00000014337	SMNDC1	100	98.739	Tupaia_belangeri
ENSNGAG00000006833	Smndc1	100	99.160	ENSUAMG00000008142	SMNDC1	100	99.160	Ursus_americanus
ENSNGAG00000006833	Smndc1	100	99.160	ENSUMAG00000023722	SMNDC1	100	99.160	Ursus_maritimus
ENSNGAG00000006833	Smndc1	83	99.495	ENSVPAG00000003402	SMNDC1	100	99.495	Vicugna_pacos
ENSNGAG00000006833	Smndc1	100	99.160	ENSVVUG00000007820	SMNDC1	100	99.160	Vulpes_vulpes
ENSNGAG00000006833	Smndc1	60	80.986	ENSXETG00000015415	SMNDC1	100	80.986	Xenopus_tropicalis
ENSNGAG00000006833	Smndc1	100	75.630	ENSXCOG00000009159	smndc1	100	75.630	Xiphophorus_couchianus
ENSNGAG00000006833	Smndc1	100	75.210	ENSXMAG00000012755	smndc1	100	75.210	Xiphophorus_maculatus