EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSNGAG00000007287 (Gene tree)
Gene ID: 103730528
Gene Symbol: Smg6
Alias: -
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Nannospalax_galili
Status: putative
Strand: Minus strand
Length: 286038 bases
Position: chrKL199813.1:3570901-3856938
Accession: 103730528
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNGAP00000005226	EST1	PF10374.9	1.5e-16	1	1
ENSNGAP00000005221	EST1	PF10374.9	2.1e-16	1	1
ENSNGAP00000005226	EST1_DNA_bind	PF10373.9	5.5e-61	1	1
ENSNGAP00000005221	EST1_DNA_bind	PF10373.9	7.8e-61	1	1
ENSNGAP00000005223	EST1_DNA_bind	PF10373.9	8.6e-11	1	1
ENSNGAP00000005221	PIN_4	PF13638.6	2.1e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNGAT00000008870	-	4164	XM_008828802	ENSNGAP00000005221	1387 (aa)	XP_008827024	-
ENSNGAT00000008872	-	711	-	ENSNGAP00000005223	237 (aa)	-	-
ENSNGAT00000008881	-	3528	-	ENSNGAP00000005226	1175 (aa)	-	-

Gene Model

Click here to download ENSNGAG00000007287's gene model file

Pathways

Pathway ID	Pathway Name	Source
ngi03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSNGAG00000007287's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNGAG00000007287	Smg6	100	90.137	ENSG00000070366	SMG6	100	96.748	Homo_sapiens
ENSNGAG00000007287	Smg6	92	56.332	ENSAPOG00000019448	smg6	74	54.439	Acanthochromis_polyacanthus
ENSNGAG00000007287	Smg6	100	90.922	ENSAMEG00000007632	SMG6	98	90.922	Ailuropoda_melanoleuca
ENSNGAG00000007287	Smg6	91	58.150	ENSACIG00000012997	smg6	72	44.822	Amphilophus_citrinellus
ENSNGAG00000007287	Smg6	92	55.895	ENSAOCG00000002630	smg6	74	54.460	Amphiprion_ocellaris
ENSNGAG00000007287	Smg6	92	56.332	ENSAPEG00000019101	smg6	74	54.617	Amphiprion_percula
ENSNGAG00000007287	Smg6	84	61.321	ENSATEG00000006483	smg6	76	53.278	Anabas_testudineus
ENSNGAG00000007287	Smg6	90	73.364	ENSACAG00000011783	SMG6	97	56.423	Anolis_carolinensis
ENSNGAG00000007287	Smg6	100	90.065	ENSANAG00000035760	SMG6	98	90.065	Aotus_nancymaae
ENSNGAG00000007287	Smg6	84	58.768	ENSACLG00000005288	smg6	80	54.524	Astatotilapia_calliptera
ENSNGAG00000007287	Smg6	90	58.371	ENSAMXG00000017326	smg6	98	50.387	Astyanax_mexicanus
ENSNGAG00000007287	Smg6	99	90.607	ENSBTAG00000000267	SMG6	98	90.607	Bos_taurus
ENSNGAG00000007287	Smg6	100	90.641	ENSCJAG00000001820	SMG6	98	90.641	Callithrix_jacchus
ENSNGAG00000007287	Smg6	99	90.535	ENSCAFG00000019260	SMG6	98	90.535	Canis_familiaris
ENSNGAG00000007287	Smg6	99	90.535	ENSCAFG00020009770	SMG6	98	90.535	Canis_lupus_dingo
ENSNGAG00000007287	Smg6	99	90.246	ENSCHIG00000021998	SMG6	98	90.246	Capra_hircus
ENSNGAG00000007287	Smg6	100	90.425	ENSTSYG00000003406	SMG6	100	96.477	Carlito_syrichta
ENSNGAG00000007287	Smg6	99	76.259	ENSCAPG00000016197	SMG6	99	82.201	Cavia_aperea
ENSNGAG00000007287	Smg6	99	92.373	ENSCPOG00000014878	SMG6	99	92.373	Cavia_porcellus
ENSNGAG00000007287	Smg6	100	91.139	ENSCCAG00000035801	SMG6	98	90.425	Cebus_capucinus
ENSNGAG00000007287	Smg6	100	90.209	ENSCATG00000031956	SMG6	98	90.209	Cercocebus_atys
ENSNGAG00000007287	Smg6	100	94.538	ENSCLAG00000006748	SMG6	100	94.538	Chinchilla_lanigera
ENSNGAG00000007287	Smg6	100	90.857	ENSCSAG00000013800	SMG6	98	90.857	Chlorocebus_sabaeus
ENSNGAG00000007287	Smg6	62	98.485	ENSCHOG00000005024	-	66	98.485	Choloepus_hoffmanni
ENSNGAG00000007287	Smg6	94	82.511	ENSCPBG00000020369	SMG6	98	72.656	Chrysemys_picta_bellii
ENSNGAG00000007287	Smg6	68	35.260	ENSCING00000010099	-	99	35.385	Ciona_intestinalis
ENSNGAG00000007287	Smg6	100	90.497	ENSCANG00000031764	SMG6	100	95.695	Colobus_angolensis_palliatus
ENSNGAG00000007287	Smg6	66	88.575	ENSCGRG00001019595	Smg6	100	88.575	Cricetulus_griseus_chok1gshd
ENSNGAG00000007287	Smg6	99	86.950	ENSCGRG00000007782	Smg6	100	87.094	Cricetulus_griseus_crigri
ENSNGAG00000007287	Smg6	89	58.744	ENSCSEG00000012757	smg6	80	53.323	Cynoglossus_semilaevis
ENSNGAG00000007287	Smg6	90	56.087	ENSCVAG00000012789	smg6	74	53.412	Cyprinodon_variegatus
ENSNGAG00000007287	Smg6	89	59.009	ENSDARG00000100481	smg6	76	55.823	Danio_rerio
ENSNGAG00000007287	Smg6	100	91.289	ENSDNOG00000048283	SMG6	98	91.289	Dasypus_novemcinctus
ENSNGAG00000007287	Smg6	94	96.847	ENSDORG00000016614	Smg6	94	96.847	Dipodomys_ordii
ENSNGAG00000007287	Smg6	93	100.000	ENSETEG00000016790	SMG6	91	100.000	Echinops_telfairi
ENSNGAG00000007287	Smg6	82	52.525	ENSEBUG00000005059	smg6	66	49.661	Eptatretus_burgeri
ENSNGAG00000007287	Smg6	99	91.317	ENSEASG00005009318	SMG6	97	91.317	Equus_asinus_asinus
ENSNGAG00000007287	Smg6	99	91.317	ENSECAG00000006519	SMG6	97	91.317	Equus_caballus
ENSNGAG00000007287	Smg6	99	79.856	ENSEEUG00000003493	SMG6	98	79.856	Erinaceus_europaeus
ENSNGAG00000007287	Smg6	85	62.381	ENSELUG00000005934	smg6	67	56.122	Esox_lucius
ENSNGAG00000007287	Smg6	99	91.835	ENSFCAG00000028817	SMG6	98	91.835	Felis_catus
ENSNGAG00000007287	Smg6	94	81.614	ENSFALG00000006538	SMG6	100	71.083	Ficedula_albicollis
ENSNGAG00000007287	Smg6	100	94.118	ENSFDAG00000015106	SMG6	100	94.118	Fukomys_damarensis
ENSNGAG00000007287	Smg6	90	54.348	ENSFHEG00000013282	smg6	74	53.271	Fundulus_heteroclitus
ENSNGAG00000007287	Smg6	83	57.895	ENSGMOG00000019077	smg6	68	67.757	Gadus_morhua
ENSNGAG00000007287	Smg6	94	82.063	ENSGALG00000003108	SMG6	96	70.901	Gallus_gallus
ENSNGAG00000007287	Smg6	91	54.310	ENSGAFG00000000379	smg6	74	53.749	Gambusia_affinis
ENSNGAG00000007287	Smg6	98	52.800	ENSGACG00000020521	smg6	99	53.234	Gasterosteus_aculeatus
ENSNGAG00000007287	Smg6	94	82.063	ENSGAGG00000025617	SMG6	100	72.281	Gopherus_agassizii
ENSNGAG00000007287	Smg6	100	91.073	ENSGGOG00000017156	SMG6	98	91.073	Gorilla_gorilla
ENSNGAG00000007287	Smg6	84	58.768	ENSHBUG00000021311	smg6	74	54.846	Haplochromis_burtoni
ENSNGAG00000007287	Smg6	100	93.697	ENSHGLG00000012882	SMG6	100	93.697	Heterocephalus_glaber_female
ENSNGAG00000007287	Smg6	100	93.697	ENSHGLG00100017815	SMG6	100	93.697	Heterocephalus_glaber_male
ENSNGAG00000007287	Smg6	92	57.082	ENSHCOG00000008761	smg6	83	58.246	Hippocampus_comes
ENSNGAG00000007287	Smg6	91	59.545	ENSIPUG00000012493	smg6	75	54.553	Ictalurus_punctatus
ENSNGAG00000007287	Smg6	100	95.781	ENSSTOG00000028127	SMG6	100	95.781	Ictidomys_tridecemlineatus
ENSNGAG00000007287	Smg6	97	89.025	ENSJJAG00000015367	Smg6	94	89.025	Jaculus_jaculus
ENSNGAG00000007287	Smg6	98	52.823	ENSKMAG00000000279	smg6	75	53.876	Kryptolebias_marmoratus
ENSNGAG00000007287	Smg6	88	55.357	ENSLBEG00000002184	smg6	73	53.666	Labrus_bergylta
ENSNGAG00000007287	Smg6	95	79.464	ENSLACG00000003276	SMG6	100	79.355	Latimeria_chalumnae
ENSNGAG00000007287	Smg6	67	57.528	ENSLACG00000000806	-	98	57.455	Latimeria_chalumnae
ENSNGAG00000007287	Smg6	100	62.083	ENSLOCG00000006448	smg6	99	53.702	Lepisosteus_oculatus
ENSNGAG00000007287	Smg6	100	91.561	ENSLAFG00000001261	SMG6	98	90.209	Loxodonta_africana
ENSNGAG00000007287	Smg6	100	90.641	ENSMFAG00000003394	SMG6	98	90.641	Macaca_fascicularis
ENSNGAG00000007287	Smg6	100	90.569	ENSMMUG00000023161	SMG6	98	90.569	Macaca_mulatta
ENSNGAG00000007287	Smg6	99	89.316	ENSMNEG00000044592	SMG6	98	85.417	Macaca_nemestrina
ENSNGAG00000007287	Smg6	95	95.865	ENSMLEG00000029353	SMG6	100	95.865	Mandrillus_leucophaeus
ENSNGAG00000007287	Smg6	84	61.429	ENSMAMG00000020119	smg6	79	55.224	Mastacembelus_armatus
ENSNGAG00000007287	Smg6	84	58.768	ENSMZEG00005024736	smg6	74	54.617	Maylandia_zebra
ENSNGAG00000007287	Smg6	87	65.739	ENSMGAG00000005401	-	97	65.739	Meleagris_gallopavo
ENSNGAG00000007287	Smg6	51	90.909	ENSMGAG00000017200	-	100	84.469	Meleagris_gallopavo
ENSNGAG00000007287	Smg6	97	94.805	ENSMAUG00000017203	-	100	94.805	Mesocricetus_auratus
ENSNGAG00000007287	Smg6	100	92.225	ENSMICG00000012913	SMG6	98	92.225	Microcebus_murinus
ENSNGAG00000007287	Smg6	99	95.745	ENSMOCG00000019924	-	99	95.745	Microtus_ochrogaster
ENSNGAG00000007287	Smg6	83	61.386	ENSMMOG00000010883	smg6	90	51.133	Mola_mola
ENSNGAG00000007287	Smg6	100	87.342	ENSMODG00000010622	SMG6	98	84.328	Monodelphis_domestica
ENSNGAG00000007287	Smg6	73	45.977	ENSMODG00000024460	-	99	40.668	Monodelphis_domestica
ENSNGAG00000007287	Smg6	73	45.977	ENSMODG00000024463	-	99	41.061	Monodelphis_domestica
ENSNGAG00000007287	Smg6	81	43.523	ENSMODG00000024395	-	98	49.784	Monodelphis_domestica
ENSNGAG00000007287	Smg6	73	45.977	ENSMODG00000024410	-	99	40.079	Monodelphis_domestica
ENSNGAG00000007287	Smg6	84	59.242	ENSMALG00000001106	smg6	73	54.102	Monopterus_albus
ENSNGAG00000007287	Smg6	100	94.118	MGP_CAROLIEiJ_G0016729	Smg6	100	94.118	Mus_caroli
ENSNGAG00000007287	Smg6	100	94.538	ENSMUSG00000038290	Smg6	100	94.538	Mus_musculus
ENSNGAG00000007287	Smg6	100	94.958	MGP_PahariEiJ_G0017866	Smg6	100	94.958	Mus_pahari
ENSNGAG00000007287	Smg6	100	94.538	MGP_SPRETEiJ_G0017572	Smg6	100	94.538	Mus_spretus
ENSNGAG00000007287	Smg6	99	91.329	ENSMPUG00000013046	SMG6	98	91.329	Mustela_putorius_furo
ENSNGAG00000007287	Smg6	100	90.274	ENSMLUG00000005739	SMG6	98	90.274	Myotis_lucifugus
ENSNGAG00000007287	Smg6	88	57.466	ENSNBRG00000009511	smg6	81	52.923	Neolamprologus_brichardi
ENSNGAG00000007287	Smg6	99	90.778	ENSNLEG00000017171	SMG6	100	96.282	Nomascus_leucogenys
ENSNGAG00000007287	Smg6	100	86.920	ENSMEUG00000015804	SMG6	100	81.537	Notamacropus_eugenii
ENSNGAG00000007287	Smg6	75	84.831	ENSOPRG00000000579	SMG6	84	96.316	Ochotona_princeps
ENSNGAG00000007287	Smg6	99	89.787	ENSODEG00000008038	SMG6	98	84.831	Octodon_degus
ENSNGAG00000007287	Smg6	99	50.514	ENSONIG00000005594	smg6	97	51.241	Oreochromis_niloticus
ENSNGAG00000007287	Smg6	100	90.863	ENSOCUG00000013018	SMG6	98	90.863	Oryctolagus_cuniculus
ENSNGAG00000007287	Smg6	90	51.601	ENSORLG00000003317	smg6	75	53.474	Oryzias_latipes
ENSNGAG00000007287	Smg6	83	57.895	ENSORLG00020015343	smg6	74	53.641	Oryzias_latipes_hni
ENSNGAG00000007287	Smg6	83	58.373	ENSORLG00015020454	smg6	75	53.666	Oryzias_latipes_hsok
ENSNGAG00000007287	Smg6	83	58.852	ENSOMEG00000010838	smg6	75	53.586	Oryzias_melastigma
ENSNGAG00000007287	Smg6	100	91.367	ENSOGAG00000004483	SMG6	98	91.367	Otolemur_garnettii
ENSNGAG00000007287	Smg6	100	89.914	ENSOARG00000015076	SMG6	100	90.173	Ovis_aries
ENSNGAG00000007287	Smg6	100	91.145	ENSPPAG00000043296	SMG6	98	91.145	Pan_paniscus
ENSNGAG00000007287	Smg6	99	91.908	ENSPPRG00000014581	SMG6	98	91.908	Panthera_pardus
ENSNGAG00000007287	Smg6	99	91.908	ENSPTIG00000008925	SMG6	100	96.869	Panthera_tigris_altaica
ENSNGAG00000007287	Smg6	100	91.001	ENSPTRG00000008544	SMG6	100	96.477	Pan_troglodytes
ENSNGAG00000007287	Smg6	100	90.497	ENSPANG00000024588	SMG6	98	90.497	Papio_anubis
ENSNGAG00000007287	Smg6	94	78.475	ENSPSIG00000006660	SMG6	96	70.533	Pelodiscus_sinensis
ENSNGAG00000007287	Smg6	97	60.230	ENSPMGG00000000844	smg6	98	49.324	Periophthalmus_magnuspinnatus
ENSNGAG00000007287	Smg6	100	94.937	ENSPEMG00000020707	Smg6	100	94.937	Peromyscus_maniculatus_bairdii
ENSNGAG00000007287	Smg6	99	50.272	ENSPFOG00000012035	smg6	98	50.822	Poecilia_formosa
ENSNGAG00000007287	Smg6	89	55.507	ENSPLAG00000017660	smg6	74	53.512	Poecilia_latipinna
ENSNGAG00000007287	Smg6	89	56.388	ENSPMEG00000000258	smg6	74	53.828	Poecilia_mexicana
ENSNGAG00000007287	Smg6	89	55.947	ENSPREG00000010066	smg6	74	53.591	Poecilia_reticulata
ENSNGAG00000007287	Smg6	100	85.560	ENSPPYG00000007790	SMG6	98	85.560	Pongo_abelii
ENSNGAG00000007287	Smg6	100	85.817	ENSPCAG00000000552	SMG6	98	85.817	Procavia_capensis
ENSNGAG00000007287	Smg6	100	92.081	ENSPCOG00000020925	SMG6	98	92.081	Propithecus_coquereli
ENSNGAG00000007287	Smg6	99	89.316	ENSPVAG00000002159	SMG6	84	88.394	Pteropus_vampyrus
ENSNGAG00000007287	Smg6	90	59.910	ENSPNYG00000024151	smg6	80	55.261	Pundamilia_nyererei
ENSNGAG00000007287	Smg6	87	61.395	ENSPNAG00000015480	smg6	74	62.703	Pygocentrus_nattereri
ENSNGAG00000007287	Smg6	100	92.729	ENSRNOG00000003041	Smg6	97	97.406	Rattus_norvegicus
ENSNGAG00000007287	Smg6	100	90.425	ENSRBIG00000024746	SMG6	98	90.425	Rhinopithecus_bieti
ENSNGAG00000007287	Smg6	100	90.497	ENSRROG00000030423	SMG6	100	95.303	Rhinopithecus_roxellana
ENSNGAG00000007287	Smg6	100	89.921	ENSSBOG00000022518	SMG6	98	88.265	Saimiri_boliviensis_boliviensis
ENSNGAG00000007287	Smg6	100	86.076	ENSSHAG00000010045	SMG6	98	84.339	Sarcophilus_harrisii
ENSNGAG00000007287	Smg6	95	39.149	ENSSHAG00000000380	-	99	39.130	Sarcophilus_harrisii
ENSNGAG00000007287	Smg6	98	57.540	ENSSFOG00015005436	smg6	70	56.439	Scleropages_formosus
ENSNGAG00000007287	Smg6	88	58.108	ENSSMAG00000019777	smg6	76	53.655	Scophthalmus_maximus
ENSNGAG00000007287	Smg6	84	58.962	ENSSDUG00000016412	smg6	74	54.170	Seriola_dumerili
ENSNGAG00000007287	Smg6	84	58.962	ENSSLDG00000020747	smg6	82	51.142	Seriola_lalandi_dorsalis
ENSNGAG00000007287	Smg6	94	81.250	ENSSPUG00000007152	SMG6	98	69.264	Sphenodon_punctatus
ENSNGAG00000007287	Smg6	92	56.579	ENSSPAG00000015633	smg6	74	54.610	Stegastes_partitus
ENSNGAG00000007287	Smg6	99	90.397	ENSSSCG00000017826	SMG6	99	90.038	Sus_scrofa
ENSNGAG00000007287	Smg6	94	83.408	ENSTGUG00000005836	SMG6	98	71.264	Taeniopygia_guttata
ENSNGAG00000007287	Smg6	88	57.273	ENSTRUG00000000358	smg6	81	54.297	Takifugu_rubripes
ENSNGAG00000007287	Smg6	99	49.865	ENSTNIG00000016164	smg6	98	50.034	Tetraodon_nigroviridis
ENSNGAG00000007287	Smg6	100	86.609	ENSTBEG00000011424	SMG6	98	86.609	Tupaia_belangeri
ENSNGAG00000007287	Smg6	95	92.478	ENSTTRG00000001175	SMG6	89	90.909	Tursiops_truncatus
ENSNGAG00000007287	Smg6	99	91.276	ENSUAMG00000025152	SMG6	100	91.204	Ursus_americanus
ENSNGAG00000007287	Smg6	99	91.402	ENSUMAG00000009306	SMG6	100	91.402	Ursus_maritimus
ENSNGAG00000007287	Smg6	84	92.593	ENSVPAG00000000225	SMG6	85	92.593	Vicugna_pacos
ENSNGAG00000007287	Smg6	99	90.462	ENSVVUG00000021727	SMG6	98	90.462	Vulpes_vulpes
ENSNGAG00000007287	Smg6	100	59.437	ENSXETG00000023799	SMG6	99	59.027	Xenopus_tropicalis
ENSNGAG00000007287	Smg6	89	58.371	ENSXCOG00000009867	smg6	74	54.662	Xiphophorus_couchianus
ENSNGAG00000007287	Smg6	89	55.947	ENSXMAG00000010321	smg6	74	53.798	Xiphophorus_maculatus