EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSNGAG00000008231 (Gene tree)
Gene ID: 103742940
Gene Symbol: Upf3b
Alias: 5730594O13Rik|RENT3B|UPF3X
Full Name: UPF3B%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Nannospalax_galili
Status: putative
Strand: Minus strand
Length: 20429 bases
Position: chrKL199075.1:4378747-4399175
Accession: 103742940
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNGAP00000005722	Smg4_UPF3	PF03467.15	5.2e-53	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNGAT00000009940	-	2371	XM_008844107	ENSNGAP00000005722	472 (aa)	XP_008842329	UPI0004ED0730

Gene Model

Click here to download ENSNGAG00000008231's gene model file

Pathways

Pathway ID	Pathway Name	Source
ngi03013	RNA transport	KEGG
ngi03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSNGAG00000008231's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNGAG00000008231	Upf3b	100	84.746	ENSG00000125351	UPF3B	96	90.385	Homo_sapiens
ENSNGAG00000008231	Upf3b	94	55.088	ENSAPOG00000012775	upf3b	94	55.088	Acanthochromis_polyacanthus
ENSNGAG00000008231	Upf3b	100	85.805	ENSAMEG00000000163	UPF3B	100	84.534	Ailuropoda_melanoleuca
ENSNGAG00000008231	Upf3b	94	51.327	ENSACIG00000013582	upf3b	94	51.101	Amphilophus_citrinellus
ENSNGAG00000008231	Upf3b	93	54.222	ENSAOCG00000000706	upf3b	94	53.982	Amphiprion_ocellaris
ENSNGAG00000008231	Upf3b	100	53.112	ENSAPEG00000005545	upf3b	99	53.333	Amphiprion_percula
ENSNGAG00000008231	Upf3b	94	57.174	ENSATEG00000018742	upf3b	94	56.416	Anabas_testudineus
ENSNGAG00000008231	Upf3b	84	49.626	ENSACAG00000001540	UPF3A	93	52.346	Anolis_carolinensis
ENSNGAG00000008231	Upf3b	91	65.446	ENSACAG00000003625	UPF3B	99	61.826	Anolis_carolinensis
ENSNGAG00000008231	Upf3b	57	66.171	ENSANAG00000033169	-	93	65.428	Aotus_nancymaae
ENSNGAG00000008231	Upf3b	100	80.508	ENSANAG00000025598	-	100	83.186	Aotus_nancymaae
ENSNGAG00000008231	Upf3b	100	84.958	ENSANAG00000021894	-	100	89.219	Aotus_nancymaae
ENSNGAG00000008231	Upf3b	94	55.088	ENSACLG00000001649	upf3b	94	55.432	Astatotilapia_calliptera
ENSNGAG00000008231	Upf3b	57	60.142	ENSAMXG00000000199	upf3b	88	58.511	Astyanax_mexicanus
ENSNGAG00000008231	Upf3b	69	89.963	ENSBTAG00000035615	UPF3B	100	89.963	Bos_taurus
ENSNGAG00000008231	Upf3b	100	84.322	ENSCJAG00000004975	UPF3B	100	88.848	Callithrix_jacchus
ENSNGAG00000008231	Upf3b	100	82.268	ENSCAFG00000018426	UPF3B	100	82.646	Canis_familiaris
ENSNGAG00000008231	Upf3b	100	82.415	ENSCAFG00020004074	UPF3B	100	81.144	Canis_lupus_dingo
ENSNGAG00000008231	Upf3b	100	82.268	ENSCHIG00000000247	-	100	81.031	Capra_hircus
ENSNGAG00000008231	Upf3b	90	59.906	ENSCHIG00000011454	-	98	54.705	Capra_hircus
ENSNGAG00000008231	Upf3b	98	81.646	ENSCHIG00000018011	-	100	89.591	Capra_hircus
ENSNGAG00000008231	Upf3b	100	85.169	ENSTSYG00000014690	UPF3B	100	83.898	Carlito_syrichta
ENSNGAG00000008231	Upf3b	99	53.319	ENSCCAG00000029813	-	87	63.704	Cebus_capucinus
ENSNGAG00000008231	Upf3b	71	69.444	ENSCCAG00000021964	-	100	69.444	Cebus_capucinus
ENSNGAG00000008231	Upf3b	100	84.534	ENSCATG00000017506	UPF3B	100	89.591	Cercocebus_atys
ENSNGAG00000008231	Upf3b	100	83.898	ENSCLAG00000003260	UPF3B	100	82.627	Chinchilla_lanigera
ENSNGAG00000008231	Upf3b	100	82.474	ENSCSAG00000018348	UPF3B	100	81.237	Chlorocebus_sabaeus
ENSNGAG00000008231	Upf3b	99	61.795	ENSCPBG00000020685	UPF3B	99	60.960	Chrysemys_picta_bellii
ENSNGAG00000008231	Upf3b	71	89.591	ENSCANG00000029220	UPF3B	100	89.591	Colobus_angolensis_palliatus
ENSNGAG00000008231	Upf3b	100	88.136	ENSCGRG00001006858	-	100	88.136	Cricetulus_griseus_chok1gshd
ENSNGAG00000008231	Upf3b	74	85.470	ENSCGRG00001013643	-	93	85.380	Cricetulus_griseus_chok1gshd
ENSNGAG00000008231	Upf3b	89	88.571	ENSCGRG00000007627	Upf3b	100	88.571	Cricetulus_griseus_crigri
ENSNGAG00000008231	Upf3b	93	52.232	ENSCSEG00000002046	upf3b	90	52.902	Cynoglossus_semilaevis
ENSNGAG00000008231	Upf3b	93	53.020	ENSCVAG00000005030	upf3b	100	51.446	Cyprinodon_variegatus
ENSNGAG00000008231	Upf3b	93	53.642	ENSDARG00000000489	upf3b	93	54.746	Danio_rerio
ENSNGAG00000008231	Upf3b	100	81.237	ENSDNOG00000008665	UPF3B	100	80.206	Dasypus_novemcinctus
ENSNGAG00000008231	Upf3b	100	81.780	ENSDORG00000006077	Upf3b	100	81.144	Dipodomys_ordii
ENSNGAG00000008231	Upf3b	99	83.652	ENSEASG00005012919	UPF3B	100	85.841	Equus_asinus_asinus
ENSNGAG00000008231	Upf3b	99	83.652	ENSECAG00000016947	UPF3B	100	82.378	Equus_caballus
ENSNGAG00000008231	Upf3b	74	55.932	ENSELUG00000020389	upf3b	100	50.400	Esox_lucius
ENSNGAG00000008231	Upf3b	100	83.686	ENSFCAG00000004388	UPF3B	100	84.388	Felis_catus
ENSNGAG00000008231	Upf3b	84	50.243	ENSFCAG00000014602	UPF3A	82	47.044	Felis_catus
ENSNGAG00000008231	Upf3b	99	60.861	ENSFALG00000001569	UPF3B	99	61.310	Ficedula_albicollis
ENSNGAG00000008231	Upf3b	100	85.381	ENSFDAG00000018869	UPF3B	100	84.322	Fukomys_damarensis
ENSNGAG00000008231	Upf3b	93	52.691	ENSFHEG00000017895	upf3b	93	53.437	Fundulus_heteroclitus
ENSNGAG00000008231	Upf3b	93	52.876	ENSGMOG00000001621	upf3b	93	53.540	Gadus_morhua
ENSNGAG00000008231	Upf3b	91	64.334	ENSGALG00000008618	UPF3B	99	64.241	Gallus_gallus
ENSNGAG00000008231	Upf3b	83	55.416	ENSGAFG00000000829	upf3b	94	51.627	Gambusia_affinis
ENSNGAG00000008231	Upf3b	92	52.928	ENSGACG00000017435	upf3b	94	65.074	Gasterosteus_aculeatus
ENSNGAG00000008231	Upf3b	99	64.301	ENSGAGG00000001219	UPF3B	99	63.883	Gopherus_agassizii
ENSNGAG00000008231	Upf3b	100	84.746	ENSGGOG00000023995	UPF3B	100	89.591	Gorilla_gorilla
ENSNGAG00000008231	Upf3b	94	55.088	ENSHBUG00000017393	upf3b	94	54.324	Haplochromis_burtoni
ENSNGAG00000008231	Upf3b	86	76.980	ENSHGLG00000011189	-	96	77.475	Heterocephalus_glaber_female
ENSNGAG00000008231	Upf3b	100	84.958	ENSHGLG00000019582	-	100	83.686	Heterocephalus_glaber_female
ENSNGAG00000008231	Upf3b	100	82.839	ENSHGLG00100002042	-	100	83.263	Heterocephalus_glaber_male
ENSNGAG00000008231	Upf3b	86	77.228	ENSHGLG00100001889	-	96	76.733	Heterocephalus_glaber_male
ENSNGAG00000008231	Upf3b	100	53.209	ENSHCOG00000017004	upf3b	100	53.015	Hippocampus_comes
ENSNGAG00000008231	Upf3b	100	53.086	ENSIPUG00000019249	upf3b	100	53.086	Ictalurus_punctatus
ENSNGAG00000008231	Upf3b	100	84.322	ENSSTOG00000001101	UPF3B	100	83.263	Ictidomys_tridecemlineatus
ENSNGAG00000008231	Upf3b	100	90.678	ENSJJAG00000000053	Upf3b	100	90.678	Jaculus_jaculus
ENSNGAG00000008231	Upf3b	96	52.402	ENSKMAG00000020300	upf3b	97	53.348	Kryptolebias_marmoratus
ENSNGAG00000008231	Upf3b	60	64.014	ENSLBEG00000028689	upf3b	57	65.217	Labrus_bergylta
ENSNGAG00000008231	Upf3b	90	60.820	ENSLACG00000008691	UPF3B	100	59.674	Latimeria_chalumnae
ENSNGAG00000008231	Upf3b	51	72.314	ENSLOCG00000015238	upf3b	99	54.915	Lepisosteus_oculatus
ENSNGAG00000008231	Upf3b	89	44.418	ENSLAFG00000023358	UPF3A	99	44.418	Loxodonta_africana
ENSNGAG00000008231	Upf3b	100	83.686	ENSLAFG00000001267	UPF3B	100	82.415	Loxodonta_africana
ENSNGAG00000008231	Upf3b	100	84.322	ENSMFAG00000045414	UPF3B	100	89.591	Macaca_fascicularis
ENSNGAG00000008231	Upf3b	100	84.322	ENSMMUG00000020222	UPF3B	100	89.591	Macaca_mulatta
ENSNGAG00000008231	Upf3b	100	84.322	ENSMNEG00000039794	UPF3B	100	89.591	Macaca_nemestrina
ENSNGAG00000008231	Upf3b	100	84.534	ENSMLEG00000010999	UPF3B	100	89.591	Mandrillus_leucophaeus
ENSNGAG00000008231	Upf3b	94	54.867	ENSMZEG00005007871	upf3b	94	55.211	Maylandia_zebra
ENSNGAG00000008231	Upf3b	81	62.879	ENSMGAG00000007728	UPF3B	99	64.359	Meleagris_gallopavo
ENSNGAG00000008231	Upf3b	100	86.864	ENSMAUG00000008705	Upf3b	100	86.864	Mesocricetus_auratus
ENSNGAG00000008231	Upf3b	73	89.630	ENSMICG00000001743	UPF3B	100	89.630	Microcebus_murinus
ENSNGAG00000008231	Upf3b	100	86.598	ENSMOCG00000017893	Upf3b	100	86.598	Microtus_ochrogaster
ENSNGAG00000008231	Upf3b	86	53.753	ENSMMOG00000004183	upf3b	96	52.268	Mola_mola
ENSNGAG00000008231	Upf3b	88	53.256	ENSMODG00000003159	UPF3A	96	53.256	Monodelphis_domestica
ENSNGAG00000008231	Upf3b	89	72.000	ENSMODG00000010232	UPF3B	99	72.000	Monodelphis_domestica
ENSNGAG00000008231	Upf3b	59	65.603	ENSMALG00000008042	upf3b	94	55.165	Monopterus_albus
ENSNGAG00000008231	Upf3b	100	87.500	MGP_CAROLIEiJ_G0032999	Upf3b	100	87.500	Mus_caroli
ENSNGAG00000008231	Upf3b	100	87.924	ENSMUSG00000036572	Upf3b	100	87.924	Mus_musculus
ENSNGAG00000008231	Upf3b	100	86.229	MGP_PahariEiJ_G0031543	Upf3b	100	86.229	Mus_pahari
ENSNGAG00000008231	Upf3b	100	87.924	MGP_SPRETEiJ_G0034152	Upf3b	100	87.924	Mus_spretus
ENSNGAG00000008231	Upf3b	98	85.249	ENSMPUG00000001531	UPF3B	100	83.948	Mustela_putorius_furo
ENSNGAG00000008231	Upf3b	100	85.805	ENSMLUG00000010821	UPF3B	100	83.898	Myotis_lucifugus
ENSNGAG00000008231	Upf3b	97	84.314	ENSNLEG00000014897	UPF3B	100	83.051	Nomascus_leucogenys
ENSNGAG00000008231	Upf3b	65	83.226	ENSMEUG00000015615	UPF3B	78	83.333	Notamacropus_eugenii
ENSNGAG00000008231	Upf3b	100	80.508	ENSODEG00000002186	-	100	78.390	Octodon_degus
ENSNGAG00000008231	Upf3b	100	52.697	ENSONIG00000002536	upf3b	100	54.451	Oreochromis_niloticus
ENSNGAG00000008231	Upf3b	100	83.505	ENSOCUG00000010213	UPF3B	100	82.268	Oryctolagus_cuniculus
ENSNGAG00000008231	Upf3b	83	56.110	ENSORLG00000001026	upf3b	94	53.319	Oryzias_latipes
ENSNGAG00000008231	Upf3b	83	55.860	ENSORLG00020003758	upf3b	94	53.097	Oryzias_latipes_hni
ENSNGAG00000008231	Upf3b	83	55.721	ENSORLG00015012954	upf3b	94	52.980	Oryzias_latipes_hsok
ENSNGAG00000008231	Upf3b	83	55.583	ENSOMEG00000014736	upf3b	95	52.759	Oryzias_melastigma
ENSNGAG00000008231	Upf3b	97	73.377	ENSOGAG00000033003	-	100	72.294	Otolemur_garnettii
ENSNGAG00000008231	Upf3b	100	84.958	ENSOGAG00000004643	-	100	83.686	Otolemur_garnettii
ENSNGAG00000008231	Upf3b	100	81.762	ENSOARG00000016051	-	100	80.533	Ovis_aries
ENSNGAG00000008231	Upf3b	89	64.692	ENSOARG00000007869	-	99	61.176	Ovis_aries
ENSNGAG00000008231	Upf3b	100	84.746	ENSPPAG00000040390	UPF3B	100	89.591	Pan_paniscus
ENSNGAG00000008231	Upf3b	100	85.381	ENSPPRG00000023536	UPF3B	100	84.746	Panthera_pardus
ENSNGAG00000008231	Upf3b	86	49.760	ENSPPRG00000025062	UPF3A	82	48.371	Panthera_pardus
ENSNGAG00000008231	Upf3b	100	81.481	ENSPTIG00000015264	UPF3B	100	91.078	Panthera_tigris_altaica
ENSNGAG00000008231	Upf3b	100	84.746	ENSPTRG00000022228	UPF3B	100	89.591	Pan_troglodytes
ENSNGAG00000008231	Upf3b	100	84.534	ENSPANG00000000900	UPF3B	100	89.591	Papio_anubis
ENSNGAG00000008231	Upf3b	91	54.751	ENSPKIG00000019226	upf3b	94	55.204	Paramormyrops_kingsleyae
ENSNGAG00000008231	Upf3b	54	72.624	ENSPSIG00000005833	UPF3B	90	71.542	Pelodiscus_sinensis
ENSNGAG00000008231	Upf3b	58	64.748	ENSPMGG00000016067	upf3b	93	65.809	Periophthalmus_magnuspinnatus
ENSNGAG00000008231	Upf3b	100	89.218	ENSPEMG00000012352	Upf3b	100	89.218	Peromyscus_maniculatus_bairdii
ENSNGAG00000008231	Upf3b	92	69.213	ENSPCIG00000028914	UPF3B	96	66.013	Phascolarctos_cinereus
ENSNGAG00000008231	Upf3b	71	58.986	ENSPCIG00000019590	-	71	67.683	Phascolarctos_cinereus
ENSNGAG00000008231	Upf3b	55	68.354	ENSPLAG00000011960	upf3a	87	48.941	Poecilia_latipinna
ENSNGAG00000008231	Upf3b	94	53.812	ENSPLAG00000019922	upf3b	94	55.947	Poecilia_latipinna
ENSNGAG00000008231	Upf3b	94	53.812	ENSPLAG00000005105	upf3b	94	55.947	Poecilia_latipinna
ENSNGAG00000008231	Upf3b	94	54.036	ENSPMEG00000023532	upf3b	94	53.057	Poecilia_mexicana
ENSNGAG00000008231	Upf3b	68	89.259	ENSPPYG00000020675	-	96	89.259	Pongo_abelii
ENSNGAG00000008231	Upf3b	100	81.856	ENSPCAG00000009464	UPF3B	100	80.619	Procavia_capensis
ENSNGAG00000008231	Upf3b	100	85.412	ENSPCOG00000021960	UPF3B	100	89.630	Propithecus_coquereli
ENSNGAG00000008231	Upf3b	100	72.577	ENSPVAG00000014075	UPF3B	100	70.103	Pteropus_vampyrus
ENSNGAG00000008231	Upf3b	94	54.464	ENSPNYG00000009846	upf3b	94	55.679	Pundamilia_nyererei
ENSNGAG00000008231	Upf3b	91	56.920	ENSPNAG00000021528	upf3b	100	65.568	Pygocentrus_nattereri
ENSNGAG00000008231	Upf3b	100	87.288	ENSRNOG00000039994	Upf3b	100	87.288	Rattus_norvegicus
ENSNGAG00000008231	Upf3b	82	83.161	ENSRBIG00000037219	UPF3B	100	81.606	Rhinopithecus_bieti
ENSNGAG00000008231	Upf3b	100	84.746	ENSRROG00000041031	UPF3B	100	89.591	Rhinopithecus_roxellana
ENSNGAG00000008231	Upf3b	100	84.746	ENSSBOG00000019740	UPF3B	100	89.219	Saimiri_boliviensis_boliviensis
ENSNGAG00000008231	Upf3b	87	73.571	ENSSHAG00000008634	UPF3B	99	67.373	Sarcophilus_harrisii
ENSNGAG00000008231	Upf3b	91	58.124	ENSSFOG00015005614	upf3b	100	53.862	Scleropages_formosus
ENSNGAG00000008231	Upf3b	93	54.667	ENSSMAG00000012913	upf3b	84	66.176	Scophthalmus_maximus
ENSNGAG00000008231	Upf3b	89	41.781	ENSSDUG00000009680	upf3a	67	71.560	Seriola_dumerili
ENSNGAG00000008231	Upf3b	83	57.107	ENSSDUG00000005682	upf3b	94	54.967	Seriola_dumerili
ENSNGAG00000008231	Upf3b	93	53.556	ENSSLDG00000003130	upf3b	94	55.188	Seriola_lalandi_dorsalis
ENSNGAG00000008231	Upf3b	89	74.541	ENSSARG00000004147	UPF3B	100	75.806	Sorex_araneus
ENSNGAG00000008231	Upf3b	99	62.319	ENSSPUG00000013082	UPF3B	99	60.455	Sphenodon_punctatus
ENSNGAG00000008231	Upf3b	94	54.324	ENSSPAG00000009989	upf3b	94	55.310	Stegastes_partitus
ENSNGAG00000008231	Upf3b	100	84.534	ENSSSCG00000012617	UPF3B	100	83.263	Sus_scrofa
ENSNGAG00000008231	Upf3b	89	66.667	ENSTGUG00000003413	UPF3B	99	66.434	Taeniopygia_guttata
ENSNGAG00000008231	Upf3b	83	56.566	ENSTRUG00000010645	upf3b	98	52.688	Takifugu_rubripes
ENSNGAG00000008231	Upf3b	86	53.511	ENSTNIG00000015763	upf3b	95	48.559	Tetraodon_nigroviridis
ENSNGAG00000008231	Upf3b	100	68.041	ENSTBEG00000003229	UPF3B	100	67.216	Tupaia_belangeri
ENSNGAG00000008231	Upf3b	100	83.686	ENSUAMG00000024565	UPF3B	100	85.841	Ursus_americanus
ENSNGAG00000008231	Upf3b	93	77.634	ENSUMAG00000002150	UPF3B	99	77.419	Ursus_maritimus
ENSNGAG00000008231	Upf3b	85	82.767	ENSVPAG00000009971	UPF3B	100	81.311	Vicugna_pacos
ENSNGAG00000008231	Upf3b	100	82.627	ENSVVUG00000011594	UPF3B	97	89.904	Vulpes_vulpes
ENSNGAG00000008231	Upf3b	87	56.295	ENSXETG00000007440	upf3b	78	75.691	Xenopus_tropicalis
ENSNGAG00000008231	Upf3b	93	50.450	ENSXCOG00000016586	upf3b	97	63.981	Xiphophorus_couchianus
ENSNGAG00000008231	Upf3b	94	53.244	ENSXMAG00000013680	upf3b	94	51.844	Xiphophorus_maculatus