EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSNGAG00000008644 (Gene tree)
Gene ID: 103726873
Gene Symbol: Lsm4
Alias: -
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Nannospalax_galili
Status: putative
Strand: Plus strand
Length: 7732 bases
Position: chrKL205470.1:1350584-1358315
Accession: 103726873
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNGAP00000005932	LSM	PF01423.22	8.5e-17	1	1
ENSNGAP00000005923	LSM	PF01423.22	2.7e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNGAT00000010434	-	1434	-	ENSNGAP00000005945	104 (aa)	-	-
ENSNGAT00000010412	-	965	XM_008824553	ENSNGAP00000005932	139 (aa)	XP_008822775	UPI0004ED5B5D
ENSNGAT00000010397	-	1118	XM_008824552	ENSNGAP00000005923	133 (aa)	XP_008822774	-
ENSNGAT00000010428	-	321	-	ENSNGAP00000005941	106 (aa)	-	-

Gene Model

Click here to download ENSNGAG00000008644's gene model file

Pathways

Pathway ID	Pathway Name	Source
ngi03018	RNA degradation	KEGG
ngi03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSNGAG00000008644's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSNGAG00000008644	Lsm4	71	35.294	ENSNGAG00000003997	Lsm2	93	35.556
ENSNGAG00000008644	Lsm4	52	34.783	ENSNGAG00000010328	Snrpd3	56	34.722

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNGAG00000008644	Lsm4	100	96.403	ENSG00000130520	LSM4	100	96.403	Homo_sapiens
ENSNGAG00000008644	Lsm4	98	70.345	ENSAPOG00000005643	lsm4	58	95.455	Acanthochromis_polyacanthus
ENSNGAG00000008644	Lsm4	100	96.241	ENSAMEG00000011162	LSM4	95	96.377	Ailuropoda_melanoleuca
ENSNGAG00000008644	Lsm4	99	75.524	ENSAOCG00000006414	lsm4	59	95.455	Amphiprion_ocellaris
ENSNGAG00000008644	Lsm4	99	72.917	ENSAPEG00000006238	lsm4	59	95.455	Amphiprion_percula
ENSNGAG00000008644	Lsm4	71	93.939	ENSATEG00000016559	lsm4	58	95.455	Anabas_testudineus
ENSNGAG00000008644	Lsm4	100	96.403	ENSANAG00000034659	LSM4	100	96.403	Aotus_nancymaae
ENSNGAG00000008644	Lsm4	79	81.452	ENSACLG00000022738	lsm4	60	95.455	Astatotilapia_calliptera
ENSNGAG00000008644	Lsm4	99	81.884	ENSAMXG00000016932	lsm4	62	95.455	Astyanax_mexicanus
ENSNGAG00000008644	Lsm4	100	96.403	ENSBTAG00000008578	LSM4	100	96.403	Bos_taurus
ENSNGAG00000008644	Lsm4	60	73.494	WBGene00003078	lsm-4	67	73.494	Caenorhabditis_elegans
ENSNGAG00000008644	Lsm4	100	96.403	ENSCJAG00000014171	LSM4	100	96.403	Callithrix_jacchus
ENSNGAG00000008644	Lsm4	99	96.377	ENSCAFG00000014900	LSM4	90	96.377	Canis_familiaris
ENSNGAG00000008644	Lsm4	100	96.403	ENSCAFG00020012137	LSM4	100	96.403	Canis_lupus_dingo
ENSNGAG00000008644	Lsm4	100	96.241	ENSCHIG00000010928	LSM4	91	96.377	Capra_hircus
ENSNGAG00000008644	Lsm4	100	97.122	ENSTSYG00000030906	LSM4	100	97.122	Carlito_syrichta
ENSNGAG00000008644	Lsm4	100	95.683	ENSCAPG00000014140	LSM4	100	95.683	Cavia_aperea
ENSNGAG00000008644	Lsm4	100	95.683	ENSCPOG00000024117	LSM4	100	95.683	Cavia_porcellus
ENSNGAG00000008644	Lsm4	100	96.403	ENSCCAG00000036308	LSM4	100	96.403	Cebus_capucinus
ENSNGAG00000008644	Lsm4	100	96.403	ENSCATG00000029311	LSM4	100	96.403	Cercocebus_atys
ENSNGAG00000008644	Lsm4	100	92.806	ENSCLAG00000010828	LSM4	100	92.806	Chinchilla_lanigera
ENSNGAG00000008644	Lsm4	100	96.403	ENSCSAG00000005370	LSM4	100	96.403	Chlorocebus_sabaeus
ENSNGAG00000008644	Lsm4	100	79.856	ENSCPBG00000012925	LSM4	100	87.770	Chrysemys_picta_bellii
ENSNGAG00000008644	Lsm4	62	90.698	ENSCING00000007519	-	69	90.909	Ciona_intestinalis
ENSNGAG00000008644	Lsm4	62	91.860	ENSCSAVG00000008596	-	70	92.045	Ciona_savignyi
ENSNGAG00000008644	Lsm4	100	96.403	ENSCANG00000043686	LSM4	100	96.403	Colobus_angolensis_palliatus
ENSNGAG00000008644	Lsm4	100	98.561	ENSCGRG00001014436	Lsm4	100	98.561	Cricetulus_griseus_chok1gshd
ENSNGAG00000008644	Lsm4	100	98.496	ENSCGRG00000009398	Lsm4	100	98.551	Cricetulus_griseus_crigri
ENSNGAG00000008644	Lsm4	70	93.814	ENSCSEG00000016127	lsm4	62	95.455	Cynoglossus_semilaevis
ENSNGAG00000008644	Lsm4	92	73.171	ENSCVAG00000021828	lsm4	56	94.521	Cyprinodon_variegatus
ENSNGAG00000008644	Lsm4	99	76.087	ENSCVAG00000010601	lsm4	62	95.455	Cyprinodon_variegatus
ENSNGAG00000008644	Lsm4	97	76.596	ENSDARG00000023852	lsm4	62	95.455	Danio_rerio
ENSNGAG00000008644	Lsm4	100	95.683	ENSDORG00000024225	Lsm4	100	95.683	Dipodomys_ordii
ENSNGAG00000008644	Lsm4	65	87.778	FBgn0032240	CG17768	57	88.636	Drosophila_melanogaster
ENSNGAG00000008644	Lsm4	93	94.355	ENSETEG00000007762	-	100	94.355	Echinops_telfairi
ENSNGAG00000008644	Lsm4	54	93.333	ENSEBUG00000003639	-	50	93.333	Eptatretus_burgeri
ENSNGAG00000008644	Lsm4	100	96.403	ENSECAG00000010141	LSM4	57	96.403	Equus_caballus
ENSNGAG00000008644	Lsm4	95	82.090	ENSELUG00000012821	lsm4	66	95.402	Esox_lucius
ENSNGAG00000008644	Lsm4	100	96.403	ENSFCAG00000040580	LSM4	100	96.403	Felis_catus
ENSNGAG00000008644	Lsm4	100	78.195	ENSFALG00000009478	LSM4	99	87.681	Ficedula_albicollis
ENSNGAG00000008644	Lsm4	100	93.233	ENSFDAG00000010124	LSM4	100	93.478	Fukomys_damarensis
ENSNGAG00000008644	Lsm4	69	93.750	ENSGMOG00000007729	lsm4	59	95.402	Gadus_morhua
ENSNGAG00000008644	Lsm4	100	79.137	ENSGALG00000003385	LSM4	100	87.770	Gallus_gallus
ENSNGAG00000008644	Lsm4	79	81.452	ENSGAFG00000004903	lsm4	55	91.781	Gambusia_affinis
ENSNGAG00000008644	Lsm4	68	95.789	ENSGACG00000008140	lsm4	59	95.455	Gasterosteus_aculeatus
ENSNGAG00000008644	Lsm4	100	79.856	ENSGAGG00000017812	LSM4	100	87.770	Gopherus_agassizii
ENSNGAG00000008644	Lsm4	100	96.403	ENSGGOG00000012914	-	100	96.403	Gorilla_gorilla
ENSNGAG00000008644	Lsm4	100	93.525	ENSHGLG00000006568	LSM4	100	93.525	Heterocephalus_glaber_female
ENSNGAG00000008644	Lsm4	66	96.739	ENSHGLG00100007894	LSM4	99	96.739	Heterocephalus_glaber_male
ENSNGAG00000008644	Lsm4	99	75.182	ENSHCOG00000008819	lsm4	62	95.455	Hippocampus_comes
ENSNGAG00000008644	Lsm4	99	81.884	ENSIPUG00000005368	Lsm4	62	95.455	Ictalurus_punctatus
ENSNGAG00000008644	Lsm4	100	96.403	ENSSTOG00000016494	LSM4	100	96.403	Ictidomys_tridecemlineatus
ENSNGAG00000008644	Lsm4	100	97.842	ENSJJAG00000017420	Lsm4	100	97.842	Jaculus_jaculus
ENSNGAG00000008644	Lsm4	62	94.186	ENSKMAG00000005073	lsm4	61	94.318	Kryptolebias_marmoratus
ENSNGAG00000008644	Lsm4	71	93.939	ENSLBEG00000027930	lsm4	59	95.455	Labrus_bergylta
ENSNGAG00000008644	Lsm4	99	81.022	ENSLACG00000015861	LSM4	98	81.022	Latimeria_chalumnae
ENSNGAG00000008644	Lsm4	93	82.946	ENSLOCG00000002025	lsm4	62	95.455	Lepisosteus_oculatus
ENSNGAG00000008644	Lsm4	100	94.737	ENSLAFG00000017459	LSM4	99	94.928	Loxodonta_africana
ENSNGAG00000008644	Lsm4	100	96.403	ENSMFAG00000031194	LSM4	100	96.403	Macaca_fascicularis
ENSNGAG00000008644	Lsm4	100	96.403	ENSMMUG00000004405	LSM4	100	96.403	Macaca_mulatta
ENSNGAG00000008644	Lsm4	100	96.403	ENSMNEG00000042899	LSM4	100	96.403	Macaca_nemestrina
ENSNGAG00000008644	Lsm4	100	96.403	ENSMLEG00000027948	LSM4	100	96.403	Mandrillus_leucophaeus
ENSNGAG00000008644	Lsm4	99	77.536	ENSMAMG00000006190	lsm4	62	95.455	Mastacembelus_armatus
ENSNGAG00000008644	Lsm4	79	81.452	ENSMZEG00005016420	lsm4	60	95.455	Maylandia_zebra
ENSNGAG00000008644	Lsm4	100	79.851	ENSMGAG00000004976	LSM4	99	87.681	Meleagris_gallopavo
ENSNGAG00000008644	Lsm4	100	95.683	ENSMICG00000000222	LSM4	100	95.683	Microcebus_murinus
ENSNGAG00000008644	Lsm4	100	99.281	ENSMOCG00000020861	Lsm4	100	99.281	Microtus_ochrogaster
ENSNGAG00000008644	Lsm4	93	93.548	ENSMODG00000015044	-	100	93.548	Monodelphis_domestica
ENSNGAG00000008644	Lsm4	99	73.913	ENSMALG00000018159	lsm4	62	94.318	Monopterus_albus
ENSNGAG00000008644	Lsm4	100	99.281	MGP_CAROLIEiJ_G0031158	Lsm4	100	99.281	Mus_caroli
ENSNGAG00000008644	Lsm4	100	99.281	ENSMUSG00000031848	Lsm4	100	99.281	Mus_musculus
ENSNGAG00000008644	Lsm4	100	99.281	MGP_PahariEiJ_G0021623	Lsm4	100	99.281	Mus_pahari
ENSNGAG00000008644	Lsm4	100	99.281	MGP_SPRETEiJ_G0032276	Lsm4	100	99.281	Mus_spretus
ENSNGAG00000008644	Lsm4	100	96.403	ENSMPUG00000015589	LSM4	100	96.403	Mustela_putorius_furo
ENSNGAG00000008644	Lsm4	100	96.241	ENSMLUG00000004010	LSM4	99	96.377	Myotis_lucifugus
ENSNGAG00000008644	Lsm4	71	93.878	ENSNBRG00000022150	lsm4	54	95.402	Neolamprologus_brichardi
ENSNGAG00000008644	Lsm4	93	89.516	ENSMEUG00000013229	LSM4	100	89.516	Notamacropus_eugenii
ENSNGAG00000008644	Lsm4	93	90.323	ENSOPRG00000005575	LSM4	100	80.645	Ochotona_princeps
ENSNGAG00000008644	Lsm4	100	70.504	ENSODEG00000011712	-	100	70.504	Octodon_degus
ENSNGAG00000008644	Lsm4	100	83.453	ENSODEG00000004519	-	100	73.381	Octodon_degus
ENSNGAG00000008644	Lsm4	100	93.525	ENSODEG00000020549	-	100	93.525	Octodon_degus
ENSNGAG00000008644	Lsm4	79	81.452	ENSONIG00000012724	lsm4	60	95.455	Oreochromis_niloticus
ENSNGAG00000008644	Lsm4	63	90.110	ENSOANG00000007434	LSM4	78	90.110	Ornithorhynchus_anatinus
ENSNGAG00000008644	Lsm4	98	81.481	ENSORLG00000008391	lsm4	61	94.318	Oryzias_latipes
ENSNGAG00000008644	Lsm4	99	70.861	ENSORLG00020014829	lsm4	61	94.318	Oryzias_latipes_hni
ENSNGAG00000008644	Lsm4	99	77.305	ENSORLG00015010205	lsm4	61	94.318	Oryzias_latipes_hsok
ENSNGAG00000008644	Lsm4	100	80.576	ENSOMEG00000003606	lsm4	61	94.318	Oryzias_melastigma
ENSNGAG00000008644	Lsm4	71	94.949	ENSOGAG00000027992	LSM4	60	96.552	Otolemur_garnettii
ENSNGAG00000008644	Lsm4	89	95.798	ENSOARG00000012553	LSM4	94	95.798	Ovis_aries
ENSNGAG00000008644	Lsm4	100	96.403	ENSPPAG00000044045	-	100	96.403	Pan_paniscus
ENSNGAG00000008644	Lsm4	100	96.403	ENSPPRG00000018264	LSM4	100	96.403	Panthera_pardus
ENSNGAG00000008644	Lsm4	100	96.241	ENSPTIG00000006306	LSM4	100	96.377	Panthera_tigris_altaica
ENSNGAG00000008644	Lsm4	100	96.403	ENSPTRG00000031470	LSM4	100	96.403	Pan_troglodytes
ENSNGAG00000008644	Lsm4	100	96.403	ENSPANG00000014399	LSM4	100	96.403	Papio_anubis
ENSNGAG00000008644	Lsm4	99	80.292	ENSPKIG00000006154	lsm4	62	95.455	Paramormyrops_kingsleyae
ENSNGAG00000008644	Lsm4	100	78.195	ENSPSIG00000012358	LSM4	100	87.681	Pelodiscus_sinensis
ENSNGAG00000008644	Lsm4	100	99.281	ENSPEMG00000001358	Lsm4	100	99.281	Peromyscus_maniculatus_bairdii
ENSNGAG00000008644	Lsm4	99	77.857	ENSPLAG00000016267	lsm4	62	95.455	Poecilia_latipinna
ENSNGAG00000008644	Lsm4	98	76.259	ENSPMEG00000016378	lsm4	63	95.402	Poecilia_mexicana
ENSNGAG00000008644	Lsm4	100	96.403	ENSPPYG00000009736	LSM4	100	96.403	Pongo_abelii
ENSNGAG00000008644	Lsm4	93	94.355	ENSPCAG00000008513	LSM4	100	94.355	Procavia_capensis
ENSNGAG00000008644	Lsm4	100	95.683	ENSPCOG00000019837	LSM4	100	95.683	Propithecus_coquereli
ENSNGAG00000008644	Lsm4	100	96.403	ENSPVAG00000015383	LSM4	100	96.403	Pteropus_vampyrus
ENSNGAG00000008644	Lsm4	79	81.452	ENSPNYG00000016794	lsm4	60	95.455	Pundamilia_nyererei
ENSNGAG00000008644	Lsm4	96	80.597	ENSPNAG00000016598	lsm4	65	95.402	Pygocentrus_nattereri
ENSNGAG00000008644	Lsm4	100	99.281	ENSRNOG00000019572	Lsm4	100	99.281	Rattus_norvegicus
ENSNGAG00000008644	Lsm4	100	96.403	ENSRBIG00000024717	LSM4	100	96.403	Rhinopithecus_bieti
ENSNGAG00000008644	Lsm4	100	96.403	ENSRROG00000045706	LSM4	100	96.403	Rhinopithecus_roxellana
ENSNGAG00000008644	Lsm4	94	96.000	ENSSBOG00000022455	LSM4	100	96.000	Saimiri_boliviensis_boliviensis
ENSNGAG00000008644	Lsm4	100	94.245	ENSSHAG00000011559	LSM4	100	94.245	Sarcophilus_harrisii
ENSNGAG00000008644	Lsm4	99	78.832	ENSSFOG00015021067	lsm4	62	95.455	Scleropages_formosus
ENSNGAG00000008644	Lsm4	99	69.718	ENSSMAG00000021020	lsm4	95	69.718	Scophthalmus_maximus
ENSNGAG00000008644	Lsm4	71	93.939	ENSSDUG00000009588	lsm4	53	95.455	Seriola_dumerili
ENSNGAG00000008644	Lsm4	71	93.939	ENSSLDG00000006827	lsm4	52	95.455	Seriola_lalandi_dorsalis
ENSNGAG00000008644	Lsm4	63	95.402	ENSSPUG00000010166	LSM4	56	95.402	Sphenodon_punctatus
ENSNGAG00000008644	Lsm4	98	70.345	ENSSPAG00000011615	lsm4	58	95.455	Stegastes_partitus
ENSNGAG00000008644	Lsm4	100	96.403	ENSSSCG00000034314	LSM4	100	96.403	Sus_scrofa
ENSNGAG00000008644	Lsm4	79	79.839	ENSTRUG00000021737	lsm4	62	94.318	Takifugu_rubripes
ENSNGAG00000008644	Lsm4	99	79.286	ENSTNIG00000010191	lsm4	61	95.455	Tetraodon_nigroviridis
ENSNGAG00000008644	Lsm4	100	96.241	ENSUAMG00000000665	LSM4	99	96.377	Ursus_americanus
ENSNGAG00000008644	Lsm4	100	96.403	ENSUMAG00000009013	LSM4	100	96.403	Ursus_maritimus
ENSNGAG00000008644	Lsm4	100	96.241	ENSVVUG00000008136	LSM4	71	96.377	Vulpes_vulpes
ENSNGAG00000008644	Lsm4	100	90.647	ENSXETG00000024933	lsm4	100	87.770	Xenopus_tropicalis