EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSNGAG00000011271 (Gene tree)
Gene ID: 103726732
Gene Symbol: Pspc1
Alias: 5730470C09Rik|PSP1
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Nannospalax_galili
Status: putative
Strand: Plus strand
Length: 60688 bases
Position: chrKL205465.1:1565548-1626235
Accession: 103726732
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNGAP00000008212	RRM_1	PF00076.22	2.6e-32	1	2
ENSNGAP00000008212	RRM_1	PF00076.22	2.6e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNGAT00000013707	-	2461	XM_008824350	ENSNGAP00000008212	522 (aa)	XP_008822572	UPI0004ED5A56

Gene Model

Click here to download ENSNGAG00000011271's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSNGAG00000011271's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSNGAG00000011271	Pspc1	89	60.390	ENSNGAG00000010857	Nono	81	67.989
ENSNGAG00000011271	Pspc1	90	57.411	ENSNGAG00000000888	Sfpq	64	57.700

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNGAG00000011271	Pspc1	100	97.323	ENSG00000121390	PSPC1	100	97.323	Homo_sapiens
ENSNGAG00000011271	Pspc1	88	70.440	ENSAPOG00000015946	pspc1	93	67.928	Acanthochromis_polyacanthus
ENSNGAG00000011271	Pspc1	100	97.132	ENSAMEG00000017420	PSPC1	100	97.132	Ailuropoda_melanoleuca
ENSNGAG00000011271	Pspc1	88	61.359	ENSACIG00000018695	pspc1	87	59.110	Amphilophus_citrinellus
ENSNGAG00000011271	Pspc1	88	69.182	ENSAOCG00000005279	pspc1	93	67.262	Amphiprion_ocellaris
ENSNGAG00000011271	Pspc1	88	70.299	ENSAPEG00000015927	pspc1	93	67.677	Amphiprion_percula
ENSNGAG00000011271	Pspc1	88	57.749	ENSATEG00000004878	pspc1	87	59.275	Anabas_testudineus
ENSNGAG00000011271	Pspc1	89	60.730	ENSAPLG00000003643	SFPQ	83	59.743	Anas_platyrhynchos
ENSNGAG00000011271	Pspc1	77	93.317	ENSAPLG00000006246	PSPC1	100	93.317	Anas_platyrhynchos
ENSNGAG00000011271	Pspc1	90	52.292	ENSACAG00000013307	-	69	55.158	Anolis_carolinensis
ENSNGAG00000011271	Pspc1	99	85.714	ENSACAG00000002093	PSPC1	99	85.905	Anolis_carolinensis
ENSNGAG00000011271	Pspc1	100	97.706	ENSANAG00000000059	PSPC1	100	97.706	Aotus_nancymaae
ENSNGAG00000011271	Pspc1	99	57.196	ENSACLG00000027220	pspc1	100	54.228	Astatotilapia_calliptera
ENSNGAG00000011271	Pspc1	99	64.457	ENSAMXG00000036881	pspc1	90	69.919	Astyanax_mexicanus
ENSNGAG00000011271	Pspc1	100	95.220	ENSBTAG00000003934	PSPC1	100	94.455	Bos_taurus
ENSNGAG00000011271	Pspc1	100	97.706	ENSCJAG00000004554	PSPC1	100	97.706	Callithrix_jacchus
ENSNGAG00000011271	Pspc1	100	97.323	ENSCAFG00020002009	PSPC1	100	97.323	Canis_lupus_dingo
ENSNGAG00000011271	Pspc1	100	95.220	ENSCHIG00000016708	PSPC1	100	94.455	Capra_hircus
ENSNGAG00000011271	Pspc1	80	88.389	ENSTSYG00000032882	PSPC1	93	85.748	Carlito_syrichta
ENSNGAG00000011271	Pspc1	100	96.558	ENSCPOG00000000395	PSPC1	100	96.558	Cavia_porcellus
ENSNGAG00000011271	Pspc1	100	97.706	ENSCCAG00000033498	PSPC1	100	97.706	Cebus_capucinus
ENSNGAG00000011271	Pspc1	100	96.941	ENSCATG00000036434	PSPC1	100	96.941	Cercocebus_atys
ENSNGAG00000011271	Pspc1	88	88.337	ENSCLAG00000005241	PSPC1	99	88.337	Chinchilla_lanigera
ENSNGAG00000011271	Pspc1	100	90.440	ENSCHOG00000008913	PSPC1	100	90.249	Choloepus_hoffmanni
ENSNGAG00000011271	Pspc1	99	86.174	ENSCPBG00000020859	PSPC1	99	87.838	Chrysemys_picta_bellii
ENSNGAG00000011271	Pspc1	59	58.766	ENSCSAVG00000003533	-	58	58.632	Ciona_savignyi
ENSNGAG00000011271	Pspc1	78	85.432	ENSCANG00000018948	PSPC1	87	100.000	Colobus_angolensis_palliatus
ENSNGAG00000011271	Pspc1	100	97.893	ENSCGRG00001018368	Pspc1	100	97.893	Cricetulus_griseus_chok1gshd
ENSNGAG00000011271	Pspc1	100	97.893	ENSCGRG00000011724	Pspc1	100	97.893	Cricetulus_griseus_crigri
ENSNGAG00000011271	Pspc1	87	65.875	ENSCVAG00000007679	-	92	63.804	Cyprinodon_variegatus
ENSNGAG00000011271	Pspc1	99	65.981	ENSDARG00000006621	pspc1	100	68.599	Danio_rerio
ENSNGAG00000011271	Pspc1	100	95.793	ENSDNOG00000011078	PSPC1	100	95.985	Dasypus_novemcinctus
ENSNGAG00000011271	Pspc1	100	94.455	ENSDORG00000016050	Pspc1	100	94.455	Dipodomys_ordii
ENSNGAG00000011271	Pspc1	55	100.000	ENSETEG00000000502	-	72	100.000	Echinops_telfairi
ENSNGAG00000011271	Pspc1	88	59.138	ENSEBUG00000003964	-	62	72.254	Eptatretus_burgeri
ENSNGAG00000011271	Pspc1	62	44.957	ENSEBUG00000010133	pspc1	78	48.485	Eptatretus_burgeri
ENSNGAG00000011271	Pspc1	100	96.935	ENSEASG00005000119	PSPC1	100	96.935	Equus_asinus_asinus
ENSNGAG00000011271	Pspc1	100	96.935	ENSECAG00000017286	PSPC1	100	96.935	Equus_caballus
ENSNGAG00000011271	Pspc1	88	82.555	ENSEEUG00000011288	-	88	81.677	Erinaceus_europaeus
ENSNGAG00000011271	Pspc1	99	65.498	ENSELUG00000003746	pspc1	100	67.339	Esox_lucius
ENSNGAG00000011271	Pspc1	100	97.323	ENSFCAG00000027841	PSPC1	100	97.323	Felis_catus
ENSNGAG00000011271	Pspc1	89	94.218	ENSFALG00000008750	PSPC1	99	87.763	Ficedula_albicollis
ENSNGAG00000011271	Pspc1	100	94.444	ENSFDAG00000002617	PSPC1	100	94.444	Fukomys_damarensis
ENSNGAG00000011271	Pspc1	88	66.953	ENSGMOG00000015074	pspc1	86	65.885	Gadus_morhua
ENSNGAG00000011271	Pspc1	99	87.097	ENSGALG00000017142	PSPC1	99	87.645	Gallus_gallus
ENSNGAG00000011271	Pspc1	66	74.499	ENSGAFG00000006327	pspc1	72	74.499	Gambusia_affinis
ENSNGAG00000011271	Pspc1	88	65.517	ENSGACG00000014901	pspc1	92	73.414	Gasterosteus_aculeatus
ENSNGAG00000011271	Pspc1	99	85.985	ENSGAGG00000019164	PSPC1	99	87.838	Gopherus_agassizii
ENSNGAG00000011271	Pspc1	92	58.848	ENSGAGG00000017325	-	70	57.851	Gopherus_agassizii
ENSNGAG00000011271	Pspc1	100	97.132	ENSGGOG00000003414	PSPC1	100	97.132	Gorilla_gorilla
ENSNGAG00000011271	Pspc1	99	64.391	ENSHBUG00000001139	pspc1	100	63.519	Haplochromis_burtoni
ENSNGAG00000011271	Pspc1	100	96.176	ENSHGLG00000018811	PSPC1	100	96.176	Heterocephalus_glaber_female
ENSNGAG00000011271	Pspc1	67	92.264	ENSHGLG00100007962	PSPC1	100	92.264	Heterocephalus_glaber_male
ENSNGAG00000011271	Pspc1	73	70.496	ENSHCOG00000013251	pspc1	83	71.123	Hippocampus_comes
ENSNGAG00000011271	Pspc1	99	67.222	ENSIPUG00000013192	pspc1	91	73.347	Ictalurus_punctatus
ENSNGAG00000011271	Pspc1	100	97.132	ENSSTOG00000026833	PSPC1	100	97.132	Ictidomys_tridecemlineatus
ENSNGAG00000011271	Pspc1	100	96.935	ENSJJAG00000018334	Pspc1	100	96.935	Jaculus_jaculus
ENSNGAG00000011271	Pspc1	88	55.076	ENSKMAG00000013525	-	91	51.626	Kryptolebias_marmoratus
ENSNGAG00000011271	Pspc1	98	61.993	ENSLBEG00000004474	pspc1	74	74.504	Labrus_bergylta
ENSNGAG00000011271	Pspc1	99	76.067	ENSLACG00000010762	PSPC1	99	77.068	Latimeria_chalumnae
ENSNGAG00000011271	Pspc1	88	84.165	ENSLOCG00000010832	pspc1	91	84.165	Lepisosteus_oculatus
ENSNGAG00000011271	Pspc1	100	95.977	ENSLAFG00000010968	PSPC1	100	95.977	Loxodonta_africana
ENSNGAG00000011271	Pspc1	100	96.941	ENSMFAG00000032728	PSPC1	100	96.941	Macaca_fascicularis
ENSNGAG00000011271	Pspc1	100	96.941	ENSMMUG00000020262	PSPC1	100	96.941	Macaca_mulatta
ENSNGAG00000011271	Pspc1	100	96.941	ENSMNEG00000027401	PSPC1	100	96.941	Macaca_nemestrina
ENSNGAG00000011271	Pspc1	100	98.496	ENSMLEG00000039043	PSPC1	100	98.496	Mandrillus_leucophaeus
ENSNGAG00000011271	Pspc1	88	67.490	ENSMAMG00000004333	pspc1	88	67.216	Mastacembelus_armatus
ENSNGAG00000011271	Pspc1	99	57.196	ENSMZEG00005005726	pspc1	100	54.228	Maylandia_zebra
ENSNGAG00000011271	Pspc1	78	93.103	ENSMGAG00000015134	PSPC1	100	93.103	Meleagris_gallopavo
ENSNGAG00000011271	Pspc1	88	93.059	ENSMAUG00000021067	Pspc1	99	93.059	Mesocricetus_auratus
ENSNGAG00000011271	Pspc1	100	96.935	ENSMICG00000013970	PSPC1	100	96.935	Microcebus_murinus
ENSNGAG00000011271	Pspc1	100	97.510	ENSMOCG00000006060	Pspc1	100	97.510	Microtus_ochrogaster
ENSNGAG00000011271	Pspc1	88	44.694	ENSMMOG00000004352	pspc1	58	52.923	Mola_mola
ENSNGAG00000011271	Pspc1	93	95.876	ENSMODG00000008029	PSPC1	78	95.876	Monodelphis_domestica
ENSNGAG00000011271	Pspc1	91	66.463	ENSMALG00000008914	pspc1	93	66.258	Monopterus_albus
ENSNGAG00000011271	Pspc1	100	97.514	MGP_CAROLIEiJ_G0019341	Pspc1	100	97.514	Mus_caroli
ENSNGAG00000011271	Pspc1	100	97.706	ENSMUSG00000021938	Pspc1	100	97.706	Mus_musculus
ENSNGAG00000011271	Pspc1	100	97.514	MGP_PahariEiJ_G0030359	Pspc1	100	97.514	Mus_pahari
ENSNGAG00000011271	Pspc1	100	97.706	MGP_SPRETEiJ_G0020232	Pspc1	100	97.706	Mus_spretus
ENSNGAG00000011271	Pspc1	100	96.941	ENSMPUG00000013347	PSPC1	100	96.941	Mustela_putorius_furo
ENSNGAG00000011271	Pspc1	100	95.627	ENSMLUG00000017663	PSPC1	100	95.627	Myotis_lucifugus
ENSNGAG00000011271	Pspc1	74	63.591	ENSNBRG00000014059	pspc1	92	60.345	Neolamprologus_brichardi
ENSNGAG00000011271	Pspc1	100	97.323	ENSNLEG00000001294	PSPC1	100	97.323	Nomascus_leucogenys
ENSNGAG00000011271	Pspc1	84	94.922	ENSMEUG00000000476	PSPC1	84	94.922	Notamacropus_eugenii
ENSNGAG00000011271	Pspc1	100	83.588	ENSODEG00000019012	-	100	84.688	Octodon_degus
ENSNGAG00000011271	Pspc1	100	84.895	ENSODEG00000007817	-	100	81.474	Octodon_degus
ENSNGAG00000011271	Pspc1	99	63.853	ENSONIG00000012010	pspc1	99	62.936	Oreochromis_niloticus
ENSNGAG00000011271	Pspc1	99	65.966	ENSOANG00000011381	-	99	64.695	Ornithorhynchus_anatinus
ENSNGAG00000011271	Pspc1	76	97.243	ENSOANG00000009017	-	100	97.243	Ornithorhynchus_anatinus
ENSNGAG00000011271	Pspc1	100	97.323	ENSOCUG00000006153	PSPC1	100	97.323	Oryctolagus_cuniculus
ENSNGAG00000011271	Pspc1	88	69.296	ENSORLG00000004232	-	87	65.618	Oryzias_latipes
ENSNGAG00000011271	Pspc1	88	68.870	ENSORLG00020000578	PSPC1	92	63.492	Oryzias_latipes_hni
ENSNGAG00000011271	Pspc1	88	69.723	ENSORLG00015017480	pspc1	87	66.038	Oryzias_latipes_hsok
ENSNGAG00000011271	Pspc1	100	97.706	ENSOGAG00000012643	PSPC1	100	97.706	Otolemur_garnettii
ENSNGAG00000011271	Pspc1	100	90.649	ENSOARG00000014163	PSPC1	100	90.649	Ovis_aries
ENSNGAG00000011271	Pspc1	89	92.043	ENSPPAG00000009836	PSPC1	95	97.640	Pan_paniscus
ENSNGAG00000011271	Pspc1	100	97.323	ENSPPRG00000008833	PSPC1	100	97.323	Panthera_pardus
ENSNGAG00000011271	Pspc1	100	82.184	ENSPTIG00000016917	PSPC1	100	82.184	Panthera_tigris_altaica
ENSNGAG00000011271	Pspc1	98	95.720	ENSPTRG00000005677	PSPC1	99	97.531	Pan_troglodytes
ENSNGAG00000011271	Pspc1	100	97.132	ENSPANG00000001992	PSPC1	100	97.132	Papio_anubis
ENSNGAG00000011271	Pspc1	82	78.322	ENSPKIG00000003578	pspc1	89	74.268	Paramormyrops_kingsleyae
ENSNGAG00000011271	Pspc1	99	86.226	ENSPSIG00000005168	PSPC1	99	87.283	Pelodiscus_sinensis
ENSNGAG00000011271	Pspc1	59	69.745	ENSPMGG00000015135	pspc1	86	69.649	Periophthalmus_magnuspinnatus
ENSNGAG00000011271	Pspc1	100	98.276	ENSPEMG00000015214	Pspc1	100	98.276	Peromyscus_maniculatus_bairdii
ENSNGAG00000011271	Pspc1	99	95.977	ENSPCIG00000017680	PSPC1	100	95.977	Phascolarctos_cinereus
ENSNGAG00000011271	Pspc1	92	66.599	ENSPFOG00000003362	pspc1	93	65.988	Poecilia_formosa
ENSNGAG00000011271	Pspc1	92	66.599	ENSPLAG00000011540	pspc1	92	66.395	Poecilia_latipinna
ENSNGAG00000011271	Pspc1	70	64.770	ENSPLAG00000004407	-	53	60.367	Poecilia_latipinna
ENSNGAG00000011271	Pspc1	92	66.194	ENSPMEG00000008322	pspc1	92	66.191	Poecilia_mexicana
ENSNGAG00000011271	Pspc1	70	64.770	ENSPMEG00000001025	-	53	60.367	Poecilia_mexicana
ENSNGAG00000011271	Pspc1	92	66.599	ENSPREG00000007786	pspc1	92	65.988	Poecilia_reticulata
ENSNGAG00000011271	Pspc1	100	96.935	ENSPPYG00000005186	PSPC1	100	96.935	Pongo_abelii
ENSNGAG00000011271	Pspc1	66	100.000	ENSPCAG00000008314	-	66	100.000	Procavia_capensis
ENSNGAG00000011271	Pspc1	100	92.925	ENSPCOG00000014364	PSPC1	100	92.925	Propithecus_coquereli
ENSNGAG00000011271	Pspc1	100	93.295	ENSPVAG00000005036	PSPC1	100	94.253	Pteropus_vampyrus
ENSNGAG00000011271	Pspc1	99	57.196	ENSPNYG00000008893	pspc1	100	54.044	Pundamilia_nyererei
ENSNGAG00000011271	Pspc1	88	72.611	ENSPNAG00000016511	pspc1	92	73.196	Pygocentrus_nattereri
ENSNGAG00000011271	Pspc1	100	97.701	ENSRNOG00000020782	Pspc1	100	97.701	Rattus_norvegicus
ENSNGAG00000011271	Pspc1	93	97.741	ENSRBIG00000036057	PSPC1	100	97.741	Rhinopithecus_bieti
ENSNGAG00000011271	Pspc1	100	97.132	ENSRROG00000036334	PSPC1	100	97.132	Rhinopithecus_roxellana
ENSNGAG00000011271	Pspc1	79	87.893	ENSSBOG00000028172	PSPC1	90	95.290	Saimiri_boliviensis_boliviensis
ENSNGAG00000011271	Pspc1	100	90.667	ENSSHAG00000004696	PSPC1	100	90.667	Sarcophilus_harrisii
ENSNGAG00000011271	Pspc1	82	79.391	ENSSFOG00015001395	pspc1	100	74.895	Scleropages_formosus
ENSNGAG00000011271	Pspc1	88	66.946	ENSSMAG00000001761	pspc1	86	74.286	Scophthalmus_maximus
ENSNGAG00000011271	Pspc1	88	68.560	ENSSDUG00000010651	pspc1	76	74.239	Seriola_dumerili
ENSNGAG00000011271	Pspc1	88	64.502	ENSSLDG00000004284	pspc1	86	59.619	Seriola_lalandi_dorsalis
ENSNGAG00000011271	Pspc1	100	88.314	ENSSARG00000000888	PSPC1	100	88.697	Sorex_araneus
ENSNGAG00000011271	Pspc1	99	74.669	ENSSPUG00000008550	PSPC1	99	75.624	Sphenodon_punctatus
ENSNGAG00000011271	Pspc1	89	53.782	ENSSPUG00000001136	-	53	61.453	Sphenodon_punctatus
ENSNGAG00000011271	Pspc1	88	68.454	ENSSPAG00000001921	pspc1	93	66.339	Stegastes_partitus
ENSNGAG00000011271	Pspc1	100	96.183	ENSSSCG00000009569	PSPC1	100	96.183	Sus_scrofa
ENSNGAG00000011271	Pspc1	89	94.218	ENSTGUG00000011295	PSPC1	100	94.218	Taeniopygia_guttata
ENSNGAG00000011271	Pspc1	88	63.057	ENSTRUG00000011335	pspc1	87	62.420	Takifugu_rubripes
ENSNGAG00000011271	Pspc1	88	65.236	ENSTNIG00000010358	pspc1	87	64.516	Tetraodon_nigroviridis
ENSNGAG00000011271	Pspc1	100	74.952	ENSTBEG00000002361	PSPC1	100	76.437	Tupaia_belangeri
ENSNGAG00000011271	Pspc1	100	95.977	ENSTTRG00000003343	PSPC1	100	95.977	Tursiops_truncatus
ENSNGAG00000011271	Pspc1	67	97.151	ENSUAMG00000012309	PSPC1	100	97.151	Ursus_americanus
ENSNGAG00000011271	Pspc1	93	97.536	ENSUMAG00000013993	PSPC1	100	97.536	Ursus_maritimus
ENSNGAG00000011271	Pspc1	76	98.496	ENSVPAG00000010029	PSPC1	100	98.496	Vicugna_pacos
ENSNGAG00000011271	Pspc1	100	97.323	ENSVVUG00000006414	PSPC1	100	97.668	Vulpes_vulpes
ENSNGAG00000011271	Pspc1	66	73.639	ENSXCOG00000017438	pspc1	83	73.639	Xiphophorus_couchianus
ENSNGAG00000011271	Pspc1	66	73.926	ENSXMAG00000007929	pspc1	83	73.926	Xiphophorus_maculatus