EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSNGAG00000014562 (Gene tree)
Gene ID: 103725055
Gene Symbol: Srrm1
Alias: SRm160
Full Name: serine and arginine repetitive matrix 1
Gene Type: protein_coding
Species: Nannospalax_galili
Status: putative
Strand: Plus strand
Length: 38320 bases
Position: chrKL205159.1:116064-154383
Accession: 103725055
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNGAP00000012855	PWI	PF01480.17	5.9e-30	1	1
ENSNGAP00000012859	PWI	PF01480.17	5.9e-30	1	1
ENSNGAP00000012850	PWI	PF01480.17	6e-30	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNGAT00000018427	-	2727	-	ENSNGAP00000012855	908 (aa)	-	-
ENSNGAT00000018431	-	2754	-	ENSNGAP00000012859	917 (aa)	-	-
ENSNGAT00000018421	-	4017	XM_008822286	ENSNGAP00000012850	922 (aa)	XP_008820508	UPI0004ED206F

Gene Model

Click here to download ENSNGAG00000014562's gene model file

Pathways

Pathway ID	Pathway Name	Source
ngi03013	RNA transport	KEGG
ngi03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSNGAG00000014562's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNGAG00000014562	Srrm1	75	95.362	ENSG00000133226	SRRM1	100	100.000	Homo_sapiens
ENSNGAG00000014562	Srrm1	60	64.646	ENSAPLG00000002066	SRRM1	60	67.442	Anas_platyrhynchos
ENSNGAG00000014562	Srrm1	100	95.705	ENSBTAG00000013772	SRRM1	100	94.252	Bos_taurus
ENSNGAG00000014562	Srrm1	89	96.035	ENSCAFG00020020948	SRRM1	99	94.397	Canis_lupus_dingo
ENSNGAG00000014562	Srrm1	54	96.755	ENSCCAG00000029474	SRRM1	96	96.755	Cebus_capucinus
ENSNGAG00000014562	Srrm1	100	95.445	ENSCLAG00000014592	SRRM1	100	93.926	Chinchilla_lanigera
ENSNGAG00000014562	Srrm1	73	95.278	ENSCHOG00000000027	SRRM1	73	95.278	Choloepus_hoffmanni
ENSNGAG00000014562	Srrm1	100	96.366	ENSCGRG00001014174	Srrm1	100	96.366	Cricetulus_griseus_chok1gshd
ENSNGAG00000014562	Srrm1	99	96.393	ENSCGRG00000017603	Srrm1	100	96.393	Cricetulus_griseus_crigri
ENSNGAG00000014562	Srrm1	100	95.553	ENSFDAG00000009903	SRRM1	100	94.035	Fukomys_damarensis
ENSNGAG00000014562	Srrm1	100	95.892	ENSSTOG00000014640	SRRM1	100	94.378	Ictidomys_tridecemlineatus
ENSNGAG00000014562	Srrm1	60	97.976	ENSMLEG00000038030	-	90	97.166	Mandrillus_leucophaeus
ENSNGAG00000014562	Srrm1	100	97.075	ENSMAUG00000015705	Srrm1	100	97.075	Mesocricetus_auratus
ENSNGAG00000014562	Srrm1	100	97.183	MGP_CAROLIEiJ_G0026636	Srrm1	100	97.183	Mus_caroli
ENSNGAG00000014562	Srrm1	100	96.750	ENSMUSG00000028809	Srrm1	100	96.750	Mus_musculus
ENSNGAG00000014562	Srrm1	100	96.858	MGP_PahariEiJ_G0028969	Srrm1	100	96.858	Mus_pahari
ENSNGAG00000014562	Srrm1	100	97.075	MGP_SPRETEiJ_G0027616	Srrm1	100	97.075	Mus_spretus
ENSNGAG00000014562	Srrm1	54	97.368	ENSNLEG00000008966	SRRM1	94	97.368	Nomascus_leucogenys
ENSNGAG00000014562	Srrm1	53	87.541	ENSMEUG00000014704	SRRM1	52	87.541	Notamacropus_eugenii
ENSNGAG00000014562	Srrm1	92	96.479	ENSOARG00000006453	SRRM1	99	94.953	Ovis_aries
ENSNGAG00000014562	Srrm1	100	96.966	ENSPEMG00000006254	Srrm1	100	96.966	Peromyscus_maniculatus_bairdii
ENSNGAG00000014562	Srrm1	100	96.590	ENSRNOG00000018194	Srrm1	100	96.590	Rattus_norvegicus
ENSNGAG00000014562	Srrm1	89	95.981	ENSSBOG00000019884	SRRM1	99	100.000	Saimiri_boliviensis_boliviensis
ENSNGAG00000014562	Srrm1	60	92.459	ENSSARG00000013718	SRRM1	60	92.459	Sorex_araneus
ENSNGAG00000014562	Srrm1	88	95.776	ENSUMAG00000013121	SRRM1	95	94.132	Ursus_maritimus