EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSNGAG00000017907 (Gene tree)
Gene ID: 103737061
Gene Symbol: Polr1a
Alias: 194kDa|2900087K15Rik|3010014K16Rik|RPA194|Rpo1-4|mRPA1
Full Name: RNA polymerase I subunit A
Gene Type: protein_coding
Species: Nannospalax_galili
Status: putative
Strand: Plus strand
Length: 89321 bases
Position: chrKL201424.1:1024938-1114258
Accession: 103737061
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNGAP00000017518	RNA_pol_Rpb1_5	PF04998.17	7e-103	1	1
ENSNGAP00000017518	RNA_pol_Rpb1_4	PF05000.17	1.8e-24	1	1
ENSNGAP00000017518	RNA_pol_Rpb1_2	PF00623.20	1.1e-70	1	1
ENSNGAP00000017518	RNA_pol_Rpb1_3	PF04983.18	8.2e-37	1	1
ENSNGAP00000017518	RNA_pol_Rpb1_1	PF04997.12	5.6e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNGAT00000023149	-	7253	XM_008836749	ENSNGAP00000017518	1718 (aa)	XP_008834971	UPI0004ED1695

Gene Model

Click here to download ENSNGAG00000017907's gene model file

Pathways

Pathway ID	Pathway Name	Source
ngi03020	RNA polymerase	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSNGAG00000017907's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSNGAG00000017907	Polr1a	60	30.804	ENSNGAG00000015863	Polr3a	69	30.719
ENSNGAG00000017907	Polr1a	62	38.806	ENSNGAG00000002543	Polr2a	53	38.806

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNGAG00000017907	Polr1a	100	88.194	ENSG00000068654	POLR1A	100	87.905	Homo_sapiens
ENSNGAG00000017907	Polr1a	69	67.534	ENSAPOG00000017945	polr1a	99	67.534	Acanthochromis_polyacanthus
ENSNGAG00000017907	Polr1a	100	88.290	ENSAMEG00000005807	POLR1A	100	90.984	Ailuropoda_melanoleuca
ENSNGAG00000017907	Polr1a	96	68.279	ENSACIG00000022147	polr1a	100	67.766	Amphilophus_citrinellus
ENSNGAG00000017907	Polr1a	100	65.817	ENSAOCG00000017336	polr1a	100	67.558	Amphiprion_ocellaris
ENSNGAG00000017907	Polr1a	100	65.759	ENSAPEG00000016105	polr1a	98	71.528	Amphiprion_percula
ENSNGAG00000017907	Polr1a	100	66.183	ENSATEG00000016773	polr1a	100	65.739	Anabas_testudineus
ENSNGAG00000017907	Polr1a	85	71.727	ENSAPLG00000013871	POLR1A	99	72.196	Anas_platyrhynchos
ENSNGAG00000017907	Polr1a	99	68.812	ENSACAG00000012141	POLR1A	99	68.696	Anolis_carolinensis
ENSNGAG00000017907	Polr1a	100	87.319	ENSANAG00000033927	POLR1A	100	87.435	Aotus_nancymaae
ENSNGAG00000017907	Polr1a	100	62.486	ENSACLG00000020541	polr1a	100	62.572	Astatotilapia_calliptera
ENSNGAG00000017907	Polr1a	100	87.652	ENSBTAG00000006481	POLR1A	100	87.659	Bos_taurus
ENSNGAG00000017907	Polr1a	99	38.322	WBGene00012999	rpoa-1	77	58.696	Caenorhabditis_elegans
ENSNGAG00000017907	Polr1a	100	86.516	ENSCJAG00000019547	POLR1A	100	86.574	Callithrix_jacchus
ENSNGAG00000017907	Polr1a	100	87.884	ENSCAFG00000007613	POLR1A	100	88.058	Canis_familiaris
ENSNGAG00000017907	Polr1a	100	88.116	ENSCAFG00020014752	POLR1A	100	88.290	Canis_lupus_dingo
ENSNGAG00000017907	Polr1a	100	87.136	ENSCHIG00000018204	POLR1A	100	86.620	Capra_hircus
ENSNGAG00000017907	Polr1a	100	86.775	ENSTSYG00000002761	POLR1A	100	86.543	Carlito_syrichta
ENSNGAG00000017907	Polr1a	97	84.340	ENSCAPG00000010132	POLR1A	100	84.519	Cavia_aperea
ENSNGAG00000017907	Polr1a	100	88.831	ENSCPOG00000012350	POLR1A	100	89.005	Cavia_porcellus
ENSNGAG00000017907	Polr1a	100	86.863	ENSCCAG00000019839	POLR1A	100	86.921	Cebus_capucinus
ENSNGAG00000017907	Polr1a	100	88.542	ENSCATG00000029786	POLR1A	100	87.702	Cercocebus_atys
ENSNGAG00000017907	Polr1a	100	89.141	ENSCLAG00000005187	POLR1A	100	89.082	Chinchilla_lanigera
ENSNGAG00000017907	Polr1a	100	88.079	ENSCSAG00000016251	POLR1A	100	87.702	Chlorocebus_sabaeus
ENSNGAG00000017907	Polr1a	99	74.115	ENSCPBG00000001115	POLR1A	99	73.465	Chrysemys_picta_bellii
ENSNGAG00000017907	Polr1a	99	46.416	ENSCSAVG00000007184	-	97	50.661	Ciona_savignyi
ENSNGAG00000017907	Polr1a	100	85.541	ENSCANG00000031785	POLR1A	100	85.055	Colobus_angolensis_palliatus
ENSNGAG00000017907	Polr1a	96	94.118	ENSCGRG00001006651	Polr1a	100	94.118	Cricetulus_griseus_chok1gshd
ENSNGAG00000017907	Polr1a	60	90.838	ENSCGRG00000010834	Polr1a	100	91.520	Cricetulus_griseus_crigri
ENSNGAG00000017907	Polr1a	100	61.811	ENSCSEG00000020190	polr1a	100	61.521	Cynoglossus_semilaevis
ENSNGAG00000017907	Polr1a	100	63.908	ENSCVAG00000020941	polr1a	100	64.282	Cyprinodon_variegatus
ENSNGAG00000017907	Polr1a	99	66.997	ENSDARG00000098375	polr1a	99	66.802	Danio_rerio
ENSNGAG00000017907	Polr1a	100	81.913	ENSDNOG00000010829	POLR1A	100	81.961	Dasypus_novemcinctus
ENSNGAG00000017907	Polr1a	100	89.288	ENSDORG00000008298	Polr1a	100	89.288	Dipodomys_ordii
ENSNGAG00000017907	Polr1a	81	43.692	FBgn0019938	RpI1	83	43.247	Drosophila_melanogaster
ENSNGAG00000017907	Polr1a	72	100.000	ENSETEG00000000412	-	72	100.000	Echinops_telfairi
ENSNGAG00000017907	Polr1a	89	48.028	ENSEBUG00000005667	-	99	47.835	Eptatretus_burgeri
ENSNGAG00000017907	Polr1a	100	88.657	ENSEASG00005001625	POLR1A	100	89.120	Equus_asinus_asinus
ENSNGAG00000017907	Polr1a	100	88.484	ENSECAG00000010092	POLR1A	100	91.331	Equus_caballus
ENSNGAG00000017907	Polr1a	100	88.484	ENSECAG00000030510	-	100	91.331	Equus_caballus
ENSNGAG00000017907	Polr1a	100	88.484	ENSECAG00000036306	-	100	91.331	Equus_caballus
ENSNGAG00000017907	Polr1a	85	93.617	ENSEEUG00000000676	POLR1A	85	93.333	Erinaceus_europaeus
ENSNGAG00000017907	Polr1a	100	66.474	ENSELUG00000012769	polr1a	99	66.222	Esox_lucius
ENSNGAG00000017907	Polr1a	100	87.775	ENSFCAG00000008966	POLR1A	100	88.123	Felis_catus
ENSNGAG00000017907	Polr1a	99	71.437	ENSFALG00000010082	POLR1A	99	71.429	Ficedula_albicollis
ENSNGAG00000017907	Polr1a	100	89.070	ENSFDAG00000013726	POLR1A	100	88.837	Fukomys_damarensis
ENSNGAG00000017907	Polr1a	100	61.574	ENSFHEG00000005996	polr1a	100	61.574	Fundulus_heteroclitus
ENSNGAG00000017907	Polr1a	100	59.977	ENSGMOG00000002230	polr1a	100	59.919	Gadus_morhua
ENSNGAG00000017907	Polr1a	91	69.186	ENSGALG00000038160	-	99	68.902	Gallus_gallus
ENSNGAG00000017907	Polr1a	100	64.385	ENSGAFG00000015266	polr1a	100	64.368	Gambusia_affinis
ENSNGAG00000017907	Polr1a	100	64.117	ENSGACG00000018791	polr1a	100	64.232	Gasterosteus_aculeatus
ENSNGAG00000017907	Polr1a	89	75.082	ENSGAGG00000004984	-	96	80.176	Gopherus_agassizii
ENSNGAG00000017907	Polr1a	100	88.252	ENSGGOG00000001788	POLR1A	100	87.963	Gorilla_gorilla
ENSNGAG00000017907	Polr1a	90	64.529	ENSHBUG00000020021	polr1a	96	71.429	Haplochromis_burtoni
ENSNGAG00000017907	Polr1a	100	89.412	ENSHGLG00000006334	POLR1A	100	89.471	Heterocephalus_glaber_female
ENSNGAG00000017907	Polr1a	100	89.153	ENSHGLG00100006614	POLR1A	100	89.211	Heterocephalus_glaber_male
ENSNGAG00000017907	Polr1a	100	62.681	ENSHCOG00000003345	polr1a	100	62.428	Hippocampus_comes
ENSNGAG00000017907	Polr1a	100	65.431	ENSIPUG00000013174	polr1a	100	65.084	Ictalurus_punctatus
ENSNGAG00000017907	Polr1a	100	88.009	ENSSTOG00000012580	POLR1A	100	88.068	Ictidomys_tridecemlineatus
ENSNGAG00000017907	Polr1a	100	90.354	ENSJJAG00000013113	Polr1a	100	90.761	Jaculus_jaculus
ENSNGAG00000017907	Polr1a	100	65.351	ENSKMAG00000007399	polr1a	100	64.730	Kryptolebias_marmoratus
ENSNGAG00000017907	Polr1a	94	68.380	ENSLBEG00000015401	polr1a	99	67.832	Labrus_bergylta
ENSNGAG00000017907	Polr1a	53	76.362	ENSLACG00000003218	polr1a	99	76.362	Latimeria_chalumnae
ENSNGAG00000017907	Polr1a	100	70.517	ENSLOCG00000010881	polr1a	100	70.575	Lepisosteus_oculatus
ENSNGAG00000017907	Polr1a	100	87.072	ENSLAFG00000014948	POLR1A	100	86.353	Loxodonta_africana
ENSNGAG00000017907	Polr1a	100	88.137	ENSMFAG00000046097	POLR1A	100	87.760	Macaca_fascicularis
ENSNGAG00000017907	Polr1a	100	88.137	ENSMMUG00000015815	POLR1A	100	87.760	Macaca_mulatta
ENSNGAG00000017907	Polr1a	100	88.079	ENSMNEG00000043313	POLR1A	100	87.702	Macaca_nemestrina
ENSNGAG00000017907	Polr1a	100	87.500	ENSMLEG00000042428	POLR1A	100	87.125	Mandrillus_leucophaeus
ENSNGAG00000017907	Polr1a	100	65.587	ENSMAMG00000016565	polr1a	100	65.990	Mastacembelus_armatus
ENSNGAG00000017907	Polr1a	100	65.478	ENSMZEG00005004915	polr1a	100	65.663	Maylandia_zebra
ENSNGAG00000017907	Polr1a	99	69.142	ENSMGAG00000013111	POLR1A	99	68.692	Meleagris_gallopavo
ENSNGAG00000017907	Polr1a	92	92.503	ENSMAUG00000008497	Polr1a	100	92.503	Mesocricetus_auratus
ENSNGAG00000017907	Polr1a	100	87.854	ENSMICG00000000757	POLR1A	100	87.796	Microcebus_murinus
ENSNGAG00000017907	Polr1a	100	92.491	ENSMOCG00000000122	Polr1a	100	92.317	Microtus_ochrogaster
ENSNGAG00000017907	Polr1a	100	64.344	ENSMMOG00000010216	polr1a	100	64.074	Mola_mola
ENSNGAG00000017907	Polr1a	100	74.842	ENSMODG00000009335	POLR1A	80	81.727	Monodelphis_domestica
ENSNGAG00000017907	Polr1a	100	65.293	ENSMALG00000013363	polr1a	100	64.733	Monopterus_albus
ENSNGAG00000017907	Polr1a	100	89.878	MGP_CAROLIEiJ_G0028494	Polr1a	100	89.354	Mus_caroli
ENSNGAG00000017907	Polr1a	100	90.169	ENSMUSG00000049553	Polr1a	100	89.645	Mus_musculus
ENSNGAG00000017907	Polr1a	100	90.920	MGP_PahariEiJ_G0022230	Polr1a	100	90.512	Mus_pahari
ENSNGAG00000017907	Polr1a	100	88.114	MGP_SPRETEiJ_G0029499	Polr1a	100	88.857	Mus_spretus
ENSNGAG00000017907	Polr1a	100	88.065	ENSMPUG00000009135	POLR1A	100	88.239	Mustela_putorius_furo
ENSNGAG00000017907	Polr1a	100	87.500	ENSMLUG00000015723	POLR1A	100	87.847	Myotis_lucifugus
ENSNGAG00000017907	Polr1a	100	65.625	ENSNBRG00000000519	polr1a	100	65.721	Neolamprologus_brichardi
ENSNGAG00000017907	Polr1a	100	86.175	ENSNLEG00000002264	POLR1A	100	86.233	Nomascus_leucogenys
ENSNGAG00000017907	Polr1a	75	92.913	ENSMEUG00000011665	-	75	92.913	Notamacropus_eugenii
ENSNGAG00000017907	Polr1a	99	82.107	ENSOPRG00000008269	POLR1A	100	81.567	Ochotona_princeps
ENSNGAG00000017907	Polr1a	100	89.186	ENSODEG00000003542	POLR1A	100	89.419	Octodon_degus
ENSNGAG00000017907	Polr1a	100	66.145	ENSONIG00000015895	polr1a	100	66.068	Oreochromis_niloticus
ENSNGAG00000017907	Polr1a	100	89.082	ENSOCUG00000010138	POLR1A	100	89.076	Oryctolagus_cuniculus
ENSNGAG00000017907	Polr1a	100	65.101	ENSORLG00000008753	polr1a	99	64.501	Oryzias_latipes
ENSNGAG00000017907	Polr1a	100	63.736	ENSORLG00020020726	polr1a	99	63.453	Oryzias_latipes_hni
ENSNGAG00000017907	Polr1a	96	73.404	ENSORLG00015016071	polr1a	99	73.333	Oryzias_latipes_hsok
ENSNGAG00000017907	Polr1a	100	88.079	ENSOGAG00000004031	POLR1A	100	87.847	Otolemur_garnettii
ENSNGAG00000017907	Polr1a	100	87.514	ENSOARG00000020601	POLR1A	100	87.464	Ovis_aries
ENSNGAG00000017907	Polr1a	100	88.021	ENSPPAG00000042450	POLR1A	100	87.731	Pan_paniscus
ENSNGAG00000017907	Polr1a	100	87.891	ENSPPRG00000006702	POLR1A	100	88.239	Panthera_pardus
ENSNGAG00000017907	Polr1a	100	87.413	ENSPTIG00000018783	POLR1A	100	87.760	Panthera_tigris_altaica
ENSNGAG00000017907	Polr1a	100	87.847	ENSPTRG00000012147	POLR1A	100	88.021	Pan_troglodytes
ENSNGAG00000017907	Polr1a	100	88.542	ENSPANG00000025908	POLR1A	100	87.702	Papio_anubis
ENSNGAG00000017907	Polr1a	94	74.306	ENSPKIG00000005468	polr1a	99	74.306	Paramormyrops_kingsleyae
ENSNGAG00000017907	Polr1a	63	71.323	ENSPSIG00000009321	-	99	69.733	Pelodiscus_sinensis
ENSNGAG00000017907	Polr1a	55	68.365	ENSPMGG00000009718	polr1a	95	68.365	Periophthalmus_magnuspinnatus
ENSNGAG00000017907	Polr1a	100	93.136	ENSPEMG00000022224	Polr1a	100	93.136	Peromyscus_maniculatus_bairdii
ENSNGAG00000017907	Polr1a	95	78.632	ENSPCIG00000004222	POLR1A	99	77.556	Phascolarctos_cinereus
ENSNGAG00000017907	Polr1a	100	64.754	ENSPFOG00000005025	polr1a	100	64.812	Poecilia_formosa
ENSNGAG00000017907	Polr1a	100	65.119	ENSPLAG00000021389	polr1a	100	65.119	Poecilia_latipinna
ENSNGAG00000017907	Polr1a	100	62.826	ENSPMEG00000006463	polr1a	100	63.405	Poecilia_mexicana
ENSNGAG00000017907	Polr1a	100	64.910	ENSPREG00000002389	polr1a	100	64.910	Poecilia_reticulata
ENSNGAG00000017907	Polr1a	100	87.789	ENSPPYG00000012217	POLR1A	100	87.616	Pongo_abelii
ENSNGAG00000017907	Polr1a	92	88.000	ENSPCAG00000011582	POLR1A	91	83.048	Procavia_capensis
ENSNGAG00000017907	Polr1a	100	87.854	ENSPCOG00000026987	POLR1A	100	87.912	Propithecus_coquereli
ENSNGAG00000017907	Polr1a	95	85.735	ENSPVAG00000012674	POLR1A	95	85.882	Pteropus_vampyrus
ENSNGAG00000017907	Polr1a	100	65.478	ENSPNYG00000000026	polr1a	100	65.663	Pundamilia_nyererei
ENSNGAG00000017907	Polr1a	100	66.879	ENSPNAG00000019223	polr1a	99	68.457	Pygocentrus_nattereri
ENSNGAG00000017907	Polr1a	100	92.375	ENSRNOG00000009545	Polr1a	100	92.375	Rattus_norvegicus
ENSNGAG00000017907	Polr1a	100	87.674	ENSRBIG00000028335	POLR1A	100	87.298	Rhinopithecus_bieti
ENSNGAG00000017907	Polr1a	100	87.616	ENSRROG00000031473	POLR1A	100	87.240	Rhinopithecus_roxellana
ENSNGAG00000017907	Polr1a	99	36.568	YOR341W	RPA190	80	38.397	Saccharomyces_cerevisiae
ENSNGAG00000017907	Polr1a	100	86.343	ENSSBOG00000030262	POLR1A	100	86.458	Saimiri_boliviensis_boliviensis
ENSNGAG00000017907	Polr1a	100	73.195	ENSSHAG00000014739	POLR1A	100	72.832	Sarcophilus_harrisii
ENSNGAG00000017907	Polr1a	100	67.673	ENSSFOG00015019716	polr1a	100	67.111	Scleropages_formosus
ENSNGAG00000017907	Polr1a	100	64.963	ENSSMAG00000014342	polr1a	100	65.041	Scophthalmus_maximus
ENSNGAG00000017907	Polr1a	100	66.454	ENSSDUG00000014631	polr1a	100	66.609	Seriola_dumerili
ENSNGAG00000017907	Polr1a	100	64.826	ENSSLDG00000024095	polr1a	100	64.257	Seriola_lalandi_dorsalis
ENSNGAG00000017907	Polr1a	74	96.809	ENSSARG00000003136	-	74	96.809	Sorex_araneus
ENSNGAG00000017907	Polr1a	95	76.923	ENSSPUG00000004215	POLR1A	98	76.923	Sphenodon_punctatus
ENSNGAG00000017907	Polr1a	64	72.172	ENSSPAG00000016341	polr1a	94	72.172	Stegastes_partitus
ENSNGAG00000017907	Polr1a	83	89.602	ENSSSCG00000008226	POLR1A	99	89.573	Sus_scrofa
ENSNGAG00000017907	Polr1a	99	70.654	ENSTGUG00000010704	POLR1A	100	70.831	Taeniopygia_guttata
ENSNGAG00000017907	Polr1a	100	63.185	ENSTRUG00000002210	polr1a	99	63.109	Takifugu_rubripes
ENSNGAG00000017907	Polr1a	100	59.781	ENSTNIG00000010116	polr1a	100	59.850	Tetraodon_nigroviridis
ENSNGAG00000017907	Polr1a	74	96.018	ENSTBEG00000008646	POLR1A	74	96.018	Tupaia_belangeri
ENSNGAG00000017907	Polr1a	100	84.125	ENSTTRG00000008597	POLR1A	100	83.430	Tursiops_truncatus
ENSNGAG00000017907	Polr1a	68	87.394	ENSUAMG00000012158	-	94	86.949	Ursus_americanus
ENSNGAG00000017907	Polr1a	100	87.022	ENSUMAG00000006700	POLR1A	100	86.783	Ursus_maritimus
ENSNGAG00000017907	Polr1a	100	87.768	ENSVVUG00000001245	POLR1A	100	87.942	Vulpes_vulpes
ENSNGAG00000017907	Polr1a	100	67.738	ENSXETG00000001952	polr1a	100	69.553	Xenopus_tropicalis
ENSNGAG00000017907	Polr1a	100	64.910	ENSXMAG00000004032	polr1a	100	65.026	Xiphophorus_maculatus