EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSNGAG00000018627 (Gene tree)
Gene ID: 103742115
Gene Symbol: Prdm4
Alias: 1700031E19Rik|2810470D21Rik|SC-1|SC1
Full Name: PR/SET domain 4
Gene Type: protein_coding
Species: Nannospalax_galili
Status: putative
Strand: Plus strand
Length: 26445 bases
Position: chrKL202582.1:3940759-3967203
Accession: 103742115
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNGAP00000018534	zf-C2H2	PF00096.26	3.3e-20	1	2
ENSNGAP00000018534	zf-C2H2	PF00096.26	3.3e-20	2	2
ENSNGAP00000018542	zf-C2H2	PF00096.26	3.5e-20	1	2
ENSNGAP00000018542	zf-C2H2	PF00096.26	3.5e-20	2	2
ENSNGAP00000018534	zf-met	PF12874.7	3.4e-05	1	1
ENSNGAP00000018542	zf-met	PF12874.7	3.6e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNGAT00000024191	-	2409	-	ENSNGAP00000018542	802 (aa)	-	-
ENSNGAT00000024183	-	3141	XM_008843112	ENSNGAP00000018534	797 (aa)	XP_008841334	UPI0004ED410C

Gene Model

Click here to download ENSNGAG00000018627's gene model file

Pathways

Pathway ID	Pathway Name	Source
ngi04722	Neurotrophin signaling pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSNGAG00000018627's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNGAG00000018627	Prdm4	100	95.734	ENSG00000110851	PRDM4	99	95.946	Homo_sapiens
ENSNGAG00000018627	Prdm4	100	95.614	ENSAMEG00000016174	PRDM4	99	95.614	Ailuropoda_melanoleuca
ENSNGAG00000018627	Prdm4	100	86.073	ENSAPLG00000009846	PRDM4	99	85.571	Anas_platyrhynchos
ENSNGAG00000018627	Prdm4	100	95.609	ENSANAG00000024800	PRDM4	99	94.228	Aotus_nancymaae
ENSNGAG00000018627	Prdm4	100	95.609	ENSBTAG00000012999	PRDM4	99	95.609	Bos_taurus
ENSNGAG00000018627	Prdm4	100	95.358	ENSCJAG00000015261	PRDM4	99	95.358	Callithrix_jacchus
ENSNGAG00000018627	Prdm4	100	95.609	ENSCAFG00000001788	PRDM4	99	95.609	Canis_familiaris
ENSNGAG00000018627	Prdm4	100	95.609	ENSCAFG00020004916	PRDM4	99	95.609	Canis_lupus_dingo
ENSNGAG00000018627	Prdm4	100	95.358	ENSCHIG00000019409	PRDM4	99	95.358	Capra_hircus
ENSNGAG00000018627	Prdm4	100	95.483	ENSTSYG00000009248	PRDM4	99	95.483	Carlito_syrichta
ENSNGAG00000018627	Prdm4	100	89.612	ENSCAPG00000013937	PRDM4	99	89.612	Cavia_aperea
ENSNGAG00000018627	Prdm4	100	89.068	ENSCPOG00000022385	PRDM4	100	89.068	Cavia_porcellus
ENSNGAG00000018627	Prdm4	100	95.734	ENSCCAG00000036033	PRDM4	99	95.734	Cebus_capucinus
ENSNGAG00000018627	Prdm4	100	95.483	ENSCATG00000044797	PRDM4	99	95.483	Cercocebus_atys
ENSNGAG00000018627	Prdm4	100	91.045	ENSCLAG00000007545	PRDM4	100	90.796	Chinchilla_lanigera
ENSNGAG00000018627	Prdm4	100	95.609	ENSCSAG00000002896	PRDM4	99	95.609	Chlorocebus_sabaeus
ENSNGAG00000018627	Prdm4	71	97.170	ENSCHOG00000001744	PRDM4	85	97.170	Choloepus_hoffmanni
ENSNGAG00000018627	Prdm4	100	87.077	ENSCPBG00000023187	PRDM4	100	86.575	Chrysemys_picta_bellii
ENSNGAG00000018627	Prdm4	100	95.483	ENSCANG00000021804	PRDM4	99	95.483	Colobus_angolensis_palliatus
ENSNGAG00000018627	Prdm4	100	94.279	ENSCGRG00001015102	-	100	94.030	Cricetulus_griseus_chok1gshd
ENSNGAG00000018627	Prdm4	96	94.194	ENSCGRG00000004044	-	100	93.935	Cricetulus_griseus_crigri
ENSNGAG00000018627	Prdm4	100	94.856	ENSDNOG00000032478	PRDM4	99	95.677	Dasypus_novemcinctus
ENSNGAG00000018627	Prdm4	100	80.928	ENSDORG00000015081	-	100	80.803	Dipodomys_ordii
ENSNGAG00000018627	Prdm4	94	45.215	ENSEBUG00000003775	prdm4	99	45.643	Eptatretus_burgeri
ENSNGAG00000018627	Prdm4	100	95.859	ENSECAG00000015423	PRDM4	99	95.859	Equus_caballus
ENSNGAG00000018627	Prdm4	94	91.867	ENSEEUG00000006569	PRDM4	99	91.600	Erinaceus_europaeus
ENSNGAG00000018627	Prdm4	99	60.292	ENSELUG00000015265	prdm4	99	59.805	Esox_lucius
ENSNGAG00000018627	Prdm4	100	96.110	ENSFCAG00000022478	PRDM4	99	96.110	Felis_catus
ENSNGAG00000018627	Prdm4	100	86.700	ENSFALG00000013342	PRDM4	100	86.324	Ficedula_albicollis
ENSNGAG00000018627	Prdm4	100	85.982	ENSGALG00000012619	PRDM4	99	85.482	Gallus_gallus
ENSNGAG00000018627	Prdm4	100	86.198	ENSGAGG00000002763	PRDM4	95	86.198	Gopherus_agassizii
ENSNGAG00000018627	Prdm4	100	95.609	ENSGGOG00000001244	PRDM4	99	95.609	Gorilla_gorilla
ENSNGAG00000018627	Prdm4	100	92.346	ENSHGLG00000004590	PRDM4	98	91.970	Heterocephalus_glaber_female
ENSNGAG00000018627	Prdm4	100	91.304	ENSHGLG00100007464	PRDM4	100	90.932	Heterocephalus_glaber_male
ENSNGAG00000018627	Prdm4	95	61.269	ENSIPUG00000024162	prdm4	93	61.619	Ictalurus_punctatus
ENSNGAG00000018627	Prdm4	100	95.609	ENSSTOG00000016168	PRDM4	99	95.609	Ictidomys_tridecemlineatus
ENSNGAG00000018627	Prdm4	100	95.094	ENSJJAG00000022448	-	96	94.370	Jaculus_jaculus
ENSNGAG00000018627	Prdm4	100	72.896	ENSLACG00000007452	PRDM4	99	73.144	Latimeria_chalumnae
ENSNGAG00000018627	Prdm4	79	41.953	ENSLOCG00000017092	prdm4	100	53.247	Lepisosteus_oculatus
ENSNGAG00000018627	Prdm4	98	95.431	ENSLAFG00000001483	PRDM4	100	95.431	Loxodonta_africana
ENSNGAG00000018627	Prdm4	100	95.734	ENSMFAG00000041862	PRDM4	99	95.734	Macaca_fascicularis
ENSNGAG00000018627	Prdm4	100	95.734	ENSMMUG00000015550	PRDM4	99	95.734	Macaca_mulatta
ENSNGAG00000018627	Prdm4	100	95.483	ENSMNEG00000032319	PRDM4	99	95.483	Macaca_nemestrina
ENSNGAG00000018627	Prdm4	100	95.609	ENSMLEG00000039607	PRDM4	99	95.609	Mandrillus_leucophaeus
ENSNGAG00000018627	Prdm4	100	78.625	ENSMGAG00000012815	PRDM4	100	78.125	Meleagris_gallopavo
ENSNGAG00000018627	Prdm4	100	94.730	ENSMICG00000007807	PRDM4	99	94.730	Microcebus_murinus
ENSNGAG00000018627	Prdm4	100	95.358	ENSMOCG00000000753	Prdm4	99	95.107	Microtus_ochrogaster
ENSNGAG00000018627	Prdm4	100	94.856	ENSMUSG00000035529	Prdm4	100	94.605	Mus_musculus
ENSNGAG00000018627	Prdm4	100	94.730	MGP_PahariEiJ_G0031398	Prdm4	100	94.730	Mus_pahari
ENSNGAG00000018627	Prdm4	100	95.734	MGP_SPRETEiJ_G0016505	Prdm4	100	95.734	Mus_spretus
ENSNGAG00000018627	Prdm4	100	89.638	ENSMPUG00000012238	PRDM4	99	88.889	Mustela_putorius_furo
ENSNGAG00000018627	Prdm4	100	95.609	ENSMLUG00000000767	PRDM4	99	95.609	Myotis_lucifugus
ENSNGAG00000018627	Prdm4	100	95.609	ENSNLEG00000006748	PRDM4	99	95.609	Nomascus_leucogenys
ENSNGAG00000018627	Prdm4	89	88.498	ENSMEUG00000004495	PRDM4	89	88.498	Notamacropus_eugenii
ENSNGAG00000018627	Prdm4	89	92.992	ENSOPRG00000010192	PRDM4	89	92.992	Ochotona_princeps
ENSNGAG00000018627	Prdm4	100	89.084	ENSODEG00000014750	PRDM4	99	88.457	Octodon_degus
ENSNGAG00000018627	Prdm4	100	89.837	ENSOANG00000005526	PRDM4	99	89.837	Ornithorhynchus_anatinus
ENSNGAG00000018627	Prdm4	94	95.708	ENSOCUG00000012859	PRDM4	96	95.708	Oryctolagus_cuniculus
ENSNGAG00000018627	Prdm4	100	95.734	ENSOGAG00000011945	PRDM4	100	95.107	Otolemur_garnettii
ENSNGAG00000018627	Prdm4	100	95.232	ENSOARG00000017955	PRDM4	99	95.232	Ovis_aries
ENSNGAG00000018627	Prdm4	100	95.985	ENSPPAG00000038438	PRDM4	99	95.985	Pan_paniscus
ENSNGAG00000018627	Prdm4	100	96.110	ENSPPRG00000004144	PRDM4	99	96.110	Panthera_pardus
ENSNGAG00000018627	Prdm4	100	96.110	ENSPTIG00000005847	PRDM4	99	96.110	Panthera_tigris_altaica
ENSNGAG00000018627	Prdm4	100	95.734	ENSPTRG00000005400	PRDM4	99	95.734	Pan_troglodytes
ENSNGAG00000018627	Prdm4	100	95.734	ENSPANG00000022084	PRDM4	99	95.734	Papio_anubis
ENSNGAG00000018627	Prdm4	99	59.620	ENSPKIG00000000875	prdm4	99	59.976	Paramormyrops_kingsleyae
ENSNGAG00000018627	Prdm4	92	80.492	ENSPSIG00000012066	PRDM4	100	80.492	Pelodiscus_sinensis
ENSNGAG00000018627	Prdm4	100	96.612	ENSPEMG00000014598	Prdm4	100	96.612	Peromyscus_maniculatus_bairdii
ENSNGAG00000018627	Prdm4	100	88.000	ENSPCIG00000009471	PRDM4	99	88.000	Phascolarctos_cinereus
ENSNGAG00000018627	Prdm4	100	95.609	ENSPPYG00000004913	PRDM4	99	95.609	Pongo_abelii
ENSNGAG00000018627	Prdm4	83	94.013	ENSPCAG00000009987	PRDM4	83	94.013	Procavia_capensis
ENSNGAG00000018627	Prdm4	100	94.605	ENSPCOG00000021060	PRDM4	99	94.605	Propithecus_coquereli
ENSNGAG00000018627	Prdm4	100	94.737	ENSPVAG00000001596	PRDM4	99	94.987	Pteropus_vampyrus
ENSNGAG00000018627	Prdm4	100	95.113	ENSRNOG00000004962	Prdm4	100	94.737	Rattus_norvegicus
ENSNGAG00000018627	Prdm4	100	95.483	ENSRBIG00000035488	PRDM4	99	95.483	Rhinopithecus_bieti
ENSNGAG00000018627	Prdm4	100	95.609	ENSRROG00000012779	PRDM4	99	95.609	Rhinopithecus_roxellana
ENSNGAG00000018627	Prdm4	100	95.859	ENSSBOG00000000403	PRDM4	99	95.859	Saimiri_boliviensis_boliviensis
ENSNGAG00000018627	Prdm4	99	63.625	ENSSFOG00015023358	prdm4	99	62.762	Scleropages_formosus
ENSNGAG00000018627	Prdm4	100	95.483	ENSSSCG00000000160	PRDM4	99	95.483	Sus_scrofa
ENSNGAG00000018627	Prdm4	100	86.951	ENSTGUG00000010962	-	99	86.575	Taeniopygia_guttata
ENSNGAG00000018627	Prdm4	74	89.078	ENSTBEG00000001732	PRDM4	84	89.078	Tupaia_belangeri
ENSNGAG00000018627	Prdm4	100	95.609	ENSTTRG00000011056	PRDM4	99	95.609	Tursiops_truncatus
ENSNGAG00000018627	Prdm4	100	95.985	ENSUAMG00000022796	PRDM4	99	95.985	Ursus_americanus
ENSNGAG00000018627	Prdm4	100	95.985	ENSUMAG00000017231	PRDM4	99	95.985	Ursus_maritimus
ENSNGAG00000018627	Prdm4	100	95.859	ENSVPAG00000002215	PRDM4	100	95.859	Vicugna_pacos
ENSNGAG00000018627	Prdm4	100	95.609	ENSVVUG00000023397	PRDM4	99	95.609	Vulpes_vulpes