EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSNGAG00000018998 (Gene tree)
Gene ID: 103748572
Gene Symbol: Apobec3
Alias: CEM15|Gm20117|Rfv-3|Rfv3
Full Name: DNA dC->dU-editing enzyme APOBEC-3-like
Gene Type: protein_coding
Species: Nannospalax_galili
Status: putative
Strand: Minus strand
Length: 17775 bases
Position: chrKL204176.1:986804-1004578
Accession: 103748572
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNGAP00000019080	APOBEC_N	PF08210.11	1.9e-81	1	2
ENSNGAP00000019080	APOBEC_N	PF08210.11	1.9e-81	2	2
ENSNGAP00000019083	APOBEC_N	PF08210.11	2.4e-81	1	2
ENSNGAP00000019083	APOBEC_N	PF08210.11	2.4e-81	2	2
ENSNGAP00000019076	APOBEC_N	PF08210.11	8e-60	1	2
ENSNGAP00000019076	APOBEC_N	PF08210.11	8e-60	2	2
ENSNGAP00000019076	APOBEC_C	PF05240.14	1.3e-54	1	2
ENSNGAP00000019076	APOBEC_C	PF05240.14	1.3e-54	2	2
ENSNGAP00000019080	APOBEC_C	PF05240.14	3e-54	1	2
ENSNGAP00000019080	APOBEC_C	PF05240.14	3e-54	2	2
ENSNGAP00000019083	APOBEC_C	PF05240.14	4e-54	1	2
ENSNGAP00000019083	APOBEC_C	PF05240.14	4e-54	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNGAT00000024734	-	2092	-	ENSNGAP00000019076	294 (aa)	-	-
ENSNGAT00000024738	-	1493	XM_008851235	ENSNGAP00000019080	387 (aa)	XP_008849457	-
ENSNGAT00000024742	-	1260	-	ENSNGAP00000019083	419 (aa)	-	-

Gene Model

Click here to download ENSNGAG00000018998's gene model file

Pathways

Pathway ID	Pathway Name	Source
ngi05170	Human immunodeficiency virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSNGAG00000018998's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSNGAG00000018998	Apobec3	92	42.857	ENSNGAG00000023430	Aicda	91	42.857
ENSNGAG00000018998	Apobec3	66	36.620	ENSNGAG00000022607	Apobec1	69	32.520
ENSNGAG00000018998	Apobec3	92	31.373	ENSNGAG00000013717	Apobec2	85	33.523

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNGAG00000018998	Apobec3	93	48.333	ENSG00000100298	APOBEC3H	100	48.333	Homo_sapiens
ENSNGAG00000018998	Apobec3	98	41.818	ENSAMEG00000010818	-	96	40.984	Ailuropoda_melanoleuca
ENSNGAG00000018998	Apobec3	92	48.744	ENSANAG00000025410	APOBEC3H	92	48.529	Aotus_nancymaae
ENSNGAG00000018998	Apobec3	92	51.264	ENSBTAG00000007755	APOBEC3H	94	51.264	Bos_taurus
ENSNGAG00000018998	Apobec3	87	49.438	ENSCJAG00000012524	APOBEC3H	92	48.905	Callithrix_jacchus
ENSNGAG00000018998	Apobec3	98	48.691	ENSCAFG00000001361	APOBEC3Z3	100	48.691	Canis_familiaris
ENSNGAG00000018998	Apobec3	94	49.162	ENSCAFG00020002584	-	92	49.711	Canis_lupus_dingo
ENSNGAG00000018998	Apobec3	99	50.542	ENSCHIG00000026580	-	97	50.542	Capra_hircus
ENSNGAG00000018998	Apobec3	86	49.419	ENSTSYG00000032894	-	99	49.419	Carlito_syrichta
ENSNGAG00000018998	Apobec3	100	49.498	ENSCPOG00000009257	-	91	50.000	Cavia_porcellus
ENSNGAG00000018998	Apobec3	92	46.970	ENSCCAG00000008525	APOBEC3H	96	47.291	Cebus_capucinus
ENSNGAG00000018998	Apobec3	91	49.438	ENSCATG00000030302	APOBEC3H	100	49.438	Cercocebus_atys
ENSNGAG00000018998	Apobec3	99	50.254	ENSCLAG00000016615	-	98	50.254	Chinchilla_lanigera
ENSNGAG00000018998	Apobec3	97	46.500	ENSCSAG00000006371	APOBEC3H	96	46.500	Chlorocebus_sabaeus
ENSNGAG00000018998	Apobec3	99	65.436	ENSCGRG00001022976	Apobec3	99	62.295	Cricetulus_griseus_chok1gshd
ENSNGAG00000018998	Apobec3	99	65.436	ENSCGRG00000005621	Apobec3	99	62.295	Cricetulus_griseus_crigri
ENSNGAG00000018998	Apobec3	92	55.516	ENSDORG00000027271	-	100	59.184	Dipodomys_ordii
ENSNGAG00000018998	Apobec3	77	49.612	ENSEASG00005009166	-	53	46.897	Equus_asinus_asinus
ENSNGAG00000018998	Apobec3	97	47.917	ENSECAG00000007726	APOBEC3H	83	47.917	Equus_caballus
ENSNGAG00000018998	Apobec3	98	48.705	ENSFCAG00000005251	APOBEC3Z3	99	48.705	Felis_catus
ENSNGAG00000018998	Apobec3	92	50.286	ENSSTOG00000007125	-	89	50.286	Ictidomys_tridecemlineatus
ENSNGAG00000018998	Apobec3	98	50.656	ENSJJAG00000016840	-	99	48.325	Jaculus_jaculus
ENSNGAG00000018998	Apobec3	94	43.666	ENSLAFG00000027404	-	99	43.666	Loxodonta_africana
ENSNGAG00000018998	Apobec3	100	47.500	ENSMFAG00000031827	APOBEC3H	96	47.500	Macaca_fascicularis
ENSNGAG00000018998	Apobec3	100	47.000	ENSMMUG00000001016	APOBEC3H	96	46.500	Macaca_mulatta
ENSNGAG00000018998	Apobec3	100	47.500	ENSMNEG00000039259	APOBEC3H	96	47.500	Macaca_nemestrina
ENSNGAG00000018998	Apobec3	100	47.500	ENSMLEG00000033417	APOBEC3H	96	47.500	Mandrillus_leucophaeus
ENSNGAG00000018998	Apobec3	99	62.416	ENSMAUG00000011683	Apobec3	99	60.047	Mesocricetus_auratus
ENSNGAG00000018998	Apobec3	99	61.381	ENSMOCG00000021576	Apobec3	99	60.563	Microtus_ochrogaster
ENSNGAG00000018998	Apobec3	99	60.269	MGP_CAROLIEiJ_G0020029	Apobec3	98	61.446	Mus_caroli
ENSNGAG00000018998	Apobec3	99	60.759	ENSMUSG00000009585	Apobec3	98	62.651	Mus_musculus
ENSNGAG00000018998	Apobec3	99	59.866	MGP_PahariEiJ_G0020031	-	100	56.757	Mus_pahari
ENSNGAG00000018998	Apobec3	99	61.279	MGP_SPRETEiJ_G0020927	Apobec3	98	65.060	Mus_spretus
ENSNGAG00000018998	Apobec3	98	47.797	ENSMPUG00000013239	-	97	44.909	Mustela_putorius_furo
ENSNGAG00000018998	Apobec3	100	48.500	ENSNLEG00000015218	-	96	48.500	Nomascus_leucogenys
ENSNGAG00000018998	Apobec3	95	49.291	ENSOCUG00000023913	-	100	44.712	Oryctolagus_cuniculus
ENSNGAG00000018998	Apobec3	99	50.542	ENSOARG00000016290	APOBEC3F	97	50.542	Ovis_aries
ENSNGAG00000018998	Apobec3	93	48.889	ENSPPAG00000036522	APOBEC3H	100	48.889	Pan_paniscus
ENSNGAG00000018998	Apobec3	87	44.444	ENSPPRG00000003675	-	99	38.756	Panthera_pardus
ENSNGAG00000018998	Apobec3	98	50.521	ENSPPRG00000003941	-	99	50.000	Panthera_pardus
ENSNGAG00000018998	Apobec3	98	50.521	ENSPTIG00000010283	-	99	50.000	Panthera_tigris_altaica
ENSNGAG00000018998	Apobec3	93	48.889	ENSPTRG00000014390	APOBEC3H	100	48.889	Pan_troglodytes
ENSNGAG00000018998	Apobec3	100	47.500	ENSPANG00000010774	APOBEC3H	100	47.500	Papio_anubis
ENSNGAG00000018998	Apobec3	100	61.839	ENSPEMG00000000456	Apobec3	100	61.839	Peromyscus_maniculatus_bairdii
ENSNGAG00000018998	Apobec3	99	47.716	ENSPPYG00000011834	-	95	47.716	Pongo_abelii
ENSNGAG00000018998	Apobec3	91	43.353	ENSPCAG00000015655	-	98	43.353	Procavia_capensis
ENSNGAG00000018998	Apobec3	74	50.505	ENSPVAG00000024161	-	98	49.242	Pteropus_vampyrus
ENSNGAG00000018998	Apobec3	74	50.505	ENSPVAG00000024267	-	98	50.000	Pteropus_vampyrus
ENSNGAG00000018998	Apobec3	91	50.289	ENSPVAG00000009462	-	98	50.289	Pteropus_vampyrus
ENSNGAG00000018998	Apobec3	95	58.793	ENSRNOG00000016852	Apobec3	100	56.659	Rattus_norvegicus
ENSNGAG00000018998	Apobec3	100	47.500	ENSRBIG00000029088	APOBEC3H	96	47.500	Rhinopithecus_bieti
ENSNGAG00000018998	Apobec3	100	48.500	ENSRROG00000024699	APOBEC3H	96	48.500	Rhinopithecus_roxellana
ENSNGAG00000018998	Apobec3	87	52.222	ENSSBOG00000030005	APOBEC3H	99	53.285	Saimiri_boliviensis_boliviensis
ENSNGAG00000018998	Apobec3	97	53.535	ENSSSCG00000000091	APOBEC3B	99	44.138	Sus_scrofa
ENSNGAG00000018998	Apobec3	84	50.000	ENSTBEG00000001532	-	99	50.000	Tupaia_belangeri
ENSNGAG00000018998	Apobec3	91	53.757	ENSTTRG00000001266	-	98	53.757	Tursiops_truncatus
ENSNGAG00000018998	Apobec3	95	50.785	ENSUAMG00000004427	-	94	50.785	Ursus_americanus
ENSNGAG00000018998	Apobec3	98	52.880	ENSUMAG00000014435	-	99	52.332	Ursus_maritimus
ENSNGAG00000018998	Apobec3	75	51.200	ENSVPAG00000011108	-	99	52.000	Vicugna_pacos