EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSNGAG00000019314 (Gene tree)
Gene ID: 103730620
Gene Symbol: Upf3a
Alias: 2600001C03Rik|4930546M19Rik|RENT3A|UPF3
Full Name: UPF3A%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Nannospalax_galili
Status: putative
Strand: Plus strand
Length: 20080 bases
Position: chrKL199822.1:19285-39364
Accession: 103730620
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNGAP00000019523	Smg4_UPF3	PF03467.15	5.5e-48	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNGAT00000025185	-	1269	XM_008828892	ENSNGAP00000019523	422 (aa)	XP_008827114	-

Gene Model

Click here to download ENSNGAG00000019314's gene model file

Pathways

Pathway ID	Pathway Name	Source
ngi03013	RNA transport	KEGG
ngi03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSNGAG00000019314's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNGAG00000019314	Upf3a	99	72.120	ENSG00000169062	UPF3A	99	75.000	Homo_sapiens
ENSNGAG00000019314	Upf3a	54	64.159	ENSAPOG00000013484	upf3a	87	54.824	Acanthochromis_polyacanthus
ENSNGAG00000019314	Upf3a	93	71.499	ENSAMEG00000004259	UPF3A	89	71.990	Ailuropoda_melanoleuca
ENSNGAG00000019314	Upf3a	54	63.158	ENSACIG00000020468	upf3a	87	65.385	Amphilophus_citrinellus
ENSNGAG00000019314	Upf3a	54	63.717	ENSAOCG00000020784	upf3a	87	54.588	Amphiprion_ocellaris
ENSNGAG00000019314	Upf3a	54	63.717	ENSAPEG00000003519	upf3a	87	54.588	Amphiprion_percula
ENSNGAG00000019314	Upf3a	95	56.716	ENSATEG00000005843	upf3a	84	56.716	Anabas_testudineus
ENSNGAG00000019314	Upf3a	84	64.481	ENSACAG00000001540	UPF3A	88	64.481	Anolis_carolinensis
ENSNGAG00000019314	Upf3a	68	48.805	ENSANAG00000025598	-	60	50.691	Aotus_nancymaae
ENSNGAG00000019314	Upf3a	99	68.203	ENSANAG00000021713	UPF3A	91	68.664	Aotus_nancymaae
ENSNGAG00000019314	Upf3a	54	63.596	ENSACLG00000026274	upf3a	84	54.009	Astatotilapia_calliptera
ENSNGAG00000019314	Upf3a	95	56.858	ENSAMXG00000002608	upf3a	86	56.858	Astyanax_mexicanus
ENSNGAG00000019314	Upf3a	55	32.932	WBGene00004882	smg-4	71	32.308	Caenorhabditis_elegans
ENSNGAG00000019314	Upf3a	94	68.627	ENSCJAG00000019102	UPF3A	91	69.124	Callithrix_jacchus
ENSNGAG00000019314	Upf3a	100	70.252	ENSCAFG00000006504	UPF3A	94	70.252	Canis_familiaris
ENSNGAG00000019314	Upf3a	100	70.938	ENSCAFG00020014268	UPF3A	91	70.938	Canis_lupus_dingo
ENSNGAG00000019314	Upf3a	99	65.438	ENSCHIG00000008682	UPF3A	86	66.129	Capra_hircus
ENSNGAG00000019314	Upf3a	54	48.261	ENSCHIG00000011454	-	81	37.119	Capra_hircus
ENSNGAG00000019314	Upf3a	75	67.890	ENSTSYG00000001918	UPF3A	87	67.890	Carlito_syrichta
ENSNGAG00000019314	Upf3a	89	71.134	ENSCPOG00000006824	UPF3A	90	71.134	Cavia_porcellus
ENSNGAG00000019314	Upf3a	99	70.046	ENSCCAG00000018406	UPF3A	91	70.507	Cebus_capucinus
ENSNGAG00000019314	Upf3a	99	72.471	ENSCATG00000029733	UPF3A	91	72.471	Cercocebus_atys
ENSNGAG00000019314	Upf3a	99	71.028	ENSCSAG00000017388	UPF3A	91	71.028	Chlorocebus_sabaeus
ENSNGAG00000019314	Upf3a	70	85.714	ENSCHOG00000006918	-	75	66.667	Choloepus_hoffmanni
ENSNGAG00000019314	Upf3a	56	55.602	ENSCPBG00000020685	UPF3B	52	55.078	Chrysemys_picta_bellii
ENSNGAG00000019314	Upf3a	100	83.924	ENSCGRG00001017387	Upf3a	100	83.924	Cricetulus_griseus_chok1gshd
ENSNGAG00000019314	Upf3a	100	83.452	ENSCGRG00000001468	Upf3a	100	83.452	Cricetulus_griseus_crigri
ENSNGAG00000019314	Upf3a	53	57.709	ENSCGRG00000007627	Upf3b	56	62.712	Cricetulus_griseus_crigri
ENSNGAG00000019314	Upf3a	54	61.181	ENSCSEG00000002046	upf3b	52	60.800	Cynoglossus_semilaevis
ENSNGAG00000019314	Upf3a	94	56.750	ENSCSEG00000005106	upf3a	84	56.750	Cynoglossus_semilaevis
ENSNGAG00000019314	Upf3a	87	57.105	ENSCVAG00000022333	upf3a	80	57.181	Cyprinodon_variegatus
ENSNGAG00000019314	Upf3a	56	61.200	ENSDARG00000000489	upf3b	54	60.784	Danio_rerio
ENSNGAG00000019314	Upf3a	95	53.253	ENSDARG00000069297	upf3a	86	54.237	Danio_rerio
ENSNGAG00000019314	Upf3a	91	71.788	ENSDNOG00000034391	UPF3A	97	70.188	Dasypus_novemcinctus
ENSNGAG00000019314	Upf3a	96	60.427	ENSETEG00000010110	UPF3A	91	61.048	Echinops_telfairi
ENSNGAG00000019314	Upf3a	99	71.429	ENSEASG00005021884	UPF3A	89	71.659	Equus_asinus_asinus
ENSNGAG00000019314	Upf3a	95	70.843	ENSECAG00000017141	UPF3A	89	71.198	Equus_caballus
ENSNGAG00000019314	Upf3a	87	60.163	ENSELUG00000011050	upf3a	77	60.163	Esox_lucius
ENSNGAG00000019314	Upf3a	95	71.154	ENSFCAG00000014602	UPF3A	91	71.724	Felis_catus
ENSNGAG00000019314	Upf3a	76	60.856	ENSGMOG00000019615	upf3a	100	60.856	Gadus_morhua
ENSNGAG00000019314	Upf3a	57	58.233	ENSGMOG00000001621	upf3b	52	58.233	Gadus_morhua
ENSNGAG00000019314	Upf3a	95	55.941	ENSGAFG00000021170	upf3a	84	55.941	Gambusia_affinis
ENSNGAG00000019314	Upf3a	76	61.371	ENSGACG00000001972	upf3a	100	60.241	Gasterosteus_aculeatus
ENSNGAG00000019314	Upf3a	56	52.479	ENSGACG00000017435	upf3b	82	60.352	Gasterosteus_aculeatus
ENSNGAG00000019314	Upf3a	91	58.015	ENSGGOG00000041219	-	86	54.707	Gorilla_gorilla
ENSNGAG00000019314	Upf3a	98	56.161	ENSGGOG00000043074	-	90	53.081	Gorilla_gorilla
ENSNGAG00000019314	Upf3a	99	71.429	ENSGGOG00000015428	UPF3A	91	71.889	Gorilla_gorilla
ENSNGAG00000019314	Upf3a	54	63.274	ENSHBUG00000011325	upf3a	87	53.901	Haplochromis_burtoni
ENSNGAG00000019314	Upf3a	54	53.648	ENSHGLG00000011189	-	71	52.632	Heterocephalus_glaber_female
ENSNGAG00000019314	Upf3a	89	73.351	ENSHGLG00000001544	UPF3A	90	73.351	Heterocephalus_glaber_female
ENSNGAG00000019314	Upf3a	89	73.351	ENSHGLG00100013244	UPF3A	90	73.351	Heterocephalus_glaber_male
ENSNGAG00000019314	Upf3a	54	53.648	ENSHGLG00100001889	-	85	47.191	Heterocephalus_glaber_male
ENSNGAG00000019314	Upf3a	57	60.569	ENSHCOG00000017004	upf3b	53	60.569	Hippocampus_comes
ENSNGAG00000019314	Upf3a	55	62.857	ENSIPUG00000019249	upf3b	58	61.961	Ictalurus_punctatus
ENSNGAG00000019314	Upf3a	89	57.937	ENSIPUG00000023450	upf3a	82	58.245	Ictalurus_punctatus
ENSNGAG00000019314	Upf3a	53	79.646	ENSSTOG00000030282	-	95	79.646	Ictidomys_tridecemlineatus
ENSNGAG00000019314	Upf3a	95	55.335	ENSKMAG00000004381	upf3a	84	55.335	Kryptolebias_marmoratus
ENSNGAG00000019314	Upf3a	58	57.874	ENSLBEG00000028689	upf3b	54	57.769	Labrus_bergylta
ENSNGAG00000019314	Upf3a	59	42.806	ENSLACG00000006645	UPF3A	83	37.700	Latimeria_chalumnae
ENSNGAG00000019314	Upf3a	56	63.563	ENSLOCG00000015238	upf3b	57	62.891	Lepisosteus_oculatus
ENSNGAG00000019314	Upf3a	93	57.673	ENSLOCG00000002665	upf3a	85	57.673	Lepisosteus_oculatus
ENSNGAG00000019314	Upf3a	66	48.322	ENSLAFG00000001267	UPF3B	65	55.016	Loxodonta_africana
ENSNGAG00000019314	Upf3a	78	60.665	ENSLAFG00000023358	UPF3A	85	60.112	Loxodonta_africana
ENSNGAG00000019314	Upf3a	99	68.000	ENSMFAG00000045016	UPF3A	91	68.000	Macaca_fascicularis
ENSNGAG00000019314	Upf3a	99	68.396	ENSMMUG00000007449	UPF3A	91	68.868	Macaca_mulatta
ENSNGAG00000019314	Upf3a	88	70.312	ENSMNEG00000036402	UPF3A	81	70.312	Macaca_nemestrina
ENSNGAG00000019314	Upf3a	88	70.213	ENSMLEG00000014726	UPF3A	84	72.549	Mandrillus_leucophaeus
ENSNGAG00000019314	Upf3a	94	57.393	ENSMAMG00000018364	upf3a	81	57.393	Mastacembelus_armatus
ENSNGAG00000019314	Upf3a	54	63.596	ENSMZEG00005021571	upf3a	84	54.009	Maylandia_zebra
ENSNGAG00000019314	Upf3a	80	66.667	ENSMGAG00000014837	UPF3A	87	66.476	Meleagris_gallopavo
ENSNGAG00000019314	Upf3a	77	84.615	ENSMOCG00000000550	Upf3a	92	84.615	Microtus_ochrogaster
ENSNGAG00000019314	Upf3a	85	68.293	ENSMODG00000003159	UPF3A	86	68.293	Monodelphis_domestica
ENSNGAG00000019314	Upf3a	99	79.147	MGP_CAROLIEiJ_G0030848	Upf3a	99	79.147	Mus_caroli
ENSNGAG00000019314	Upf3a	99	79.858	ENSMUSG00000038398	Upf3a	99	79.858	Mus_musculus
ENSNGAG00000019314	Upf3a	99	79.858	MGP_PahariEiJ_G0021311	Upf3a	99	79.858	Mus_pahari
ENSNGAG00000019314	Upf3a	99	79.621	MGP_SPRETEiJ_G0031958	Upf3a	99	79.621	Mus_spretus
ENSNGAG00000019314	Upf3a	99	71.296	ENSMPUG00000009139	UPF3A	90	71.296	Mustela_putorius_furo
ENSNGAG00000019314	Upf3a	84	70.620	ENSMLUG00000015905	UPF3A	88	70.620	Myotis_lucifugus
ENSNGAG00000019314	Upf3a	99	71.127	ENSNLEG00000007563	UPF3A	91	71.127	Nomascus_leucogenys
ENSNGAG00000019314	Upf3a	64	73.934	ENSOPRG00000008846	-	67	75.829	Ochotona_princeps
ENSNGAG00000019314	Upf3a	84	57.065	ENSOANG00000006985	-	96	57.065	Ornithorhynchus_anatinus
ENSNGAG00000019314	Upf3a	92	59.367	ENSOCUG00000008450	UPF3A	83	59.466	Oryctolagus_cuniculus
ENSNGAG00000019314	Upf3a	56	49.794	ENSORLG00000001026	upf3b	55	56.809	Oryzias_latipes
ENSNGAG00000019314	Upf3a	88	58.730	ENSORLG00000010911	upf3a	86	54.225	Oryzias_latipes
ENSNGAG00000019314	Upf3a	88	57.029	ENSORLG00020014317	upf3a	83	54.750	Oryzias_latipes_hni
ENSNGAG00000019314	Upf3a	56	50.206	ENSORLG00020003758	upf3b	70	54.839	Oryzias_latipes_hni
ENSNGAG00000019314	Upf3a	56	50.206	ENSORLG00015012954	upf3b	55	57.198	Oryzias_latipes_hsok
ENSNGAG00000019314	Upf3a	87	56.952	ENSOMEG00000014425	upf3a	84	55.250	Oryzias_melastigma
ENSNGAG00000019314	Upf3a	91	70.960	ENSOGAG00000004788	UPF3A	96	70.960	Otolemur_garnettii
ENSNGAG00000019314	Upf3a	58	50.820	ENSOARG00000007869	-	59	47.541	Ovis_aries
ENSNGAG00000019314	Upf3a	90	68.193	ENSOARG00000009004	UPF3A	83	68.193	Ovis_aries
ENSNGAG00000019314	Upf3a	99	71.363	ENSPPAG00000042267	UPF3A	91	71.363	Pan_paniscus
ENSNGAG00000019314	Upf3a	95	71.154	ENSPPRG00000025062	UPF3A	91	71.724	Panthera_pardus
ENSNGAG00000019314	Upf3a	90	55.243	ENSPTRG00000041835	-	81	55.710	Pan_troglodytes
ENSNGAG00000019314	Upf3a	90	53.453	ENSPTRG00000041187	-	86	56.888	Pan_troglodytes
ENSNGAG00000019314	Upf3a	99	72.120	ENSPTRG00000006073	UPF3A	91	72.120	Pan_troglodytes
ENSNGAG00000019314	Upf3a	89	55.670	ENSPTRG00000051640	-	86	55.155	Pan_troglodytes
ENSNGAG00000019314	Upf3a	99	72.471	ENSPANG00000004346	UPF3A	91	72.471	Papio_anubis
ENSNGAG00000019314	Upf3a	56	62.249	ENSPKIG00000019226	upf3b	75	66.667	Paramormyrops_kingsleyae
ENSNGAG00000019314	Upf3a	54	63.158	ENSPKIG00000004422	upf3a	88	54.630	Paramormyrops_kingsleyae
ENSNGAG00000019314	Upf3a	84	66.213	ENSPSIG00000007468	UPF3A	89	66.213	Pelodiscus_sinensis
ENSNGAG00000019314	Upf3a	100	82.979	ENSPEMG00000019968	-	100	82.979	Peromyscus_maniculatus_bairdii
ENSNGAG00000019314	Upf3a	78	72.269	ENSPCIG00000019590	-	90	72.170	Phascolarctos_cinereus
ENSNGAG00000019314	Upf3a	95	55.970	ENSPFOG00000013222	upf3a	84	55.970	Poecilia_formosa
ENSNGAG00000019314	Upf3a	95	54.950	ENSPLAG00000011960	upf3a	80	61.224	Poecilia_latipinna
ENSNGAG00000019314	Upf3a	95	56.296	ENSPMEG00000000836	upf3a	81	56.296	Poecilia_mexicana
ENSNGAG00000019314	Upf3a	99	71.198	ENSPPYG00000005536	UPF3A	91	71.659	Pongo_abelii
ENSNGAG00000019314	Upf3a	74	66.358	ENSPCAG00000013124	UPF3A	67	66.975	Procavia_capensis
ENSNGAG00000019314	Upf3a	99	66.590	ENSPVAG00000005656	UPF3A	91	67.051	Pteropus_vampyrus
ENSNGAG00000019314	Upf3a	54	63.596	ENSPNYG00000011289	upf3a	84	54.009	Pundamilia_nyererei
ENSNGAG00000019314	Upf3a	52	64.384	ENSPNAG00000021528	upf3b	72	64.384	Pygocentrus_nattereri
ENSNGAG00000019314	Upf3a	89	57.825	ENSPNAG00000019532	upf3a	82	58.133	Pygocentrus_nattereri
ENSNGAG00000019314	Upf3a	96	80.741	ENSRNOG00000017397	Upf3a	99	80.741	Rattus_norvegicus
ENSNGAG00000019314	Upf3a	86	72.404	ENSRBIG00000034007	UPF3A	85	71.958	Rhinopithecus_bieti
ENSNGAG00000019314	Upf3a	84	73.315	ENSRROG00000012212	UPF3A	76	73.315	Rhinopithecus_roxellana
ENSNGAG00000019314	Upf3a	99	61.751	ENSSBOG00000029989	UPF3A	90	62.212	Saimiri_boliviensis_boliviensis
ENSNGAG00000019314	Upf3a	86	67.109	ENSSHAG00000009895	UPF3A	90	67.109	Sarcophilus_harrisii
ENSNGAG00000019314	Upf3a	87	56.948	ENSSFOG00015021851	upf3a	79	56.676	Scleropages_formosus
ENSNGAG00000019314	Upf3a	59	62.403	ENSSFOG00015005614	upf3b	57	61.923	Scleropages_formosus
ENSNGAG00000019314	Upf3a	60	56.727	ENSSMAG00000012913	upf3b	69	64.651	Scophthalmus_maximus
ENSNGAG00000019314	Upf3a	95	53.465	ENSSMAG00000003858	upf3a	79	70.085	Scophthalmus_maximus
ENSNGAG00000019314	Upf3a	99	52.830	ENSSDUG00000009680	upf3a	91	57.485	Seriola_dumerili
ENSNGAG00000019314	Upf3a	99	52.719	ENSSLDG00000009700	upf3a	87	54.118	Seriola_lalandi_dorsalis
ENSNGAG00000019314	Upf3a	84	60.822	ENSSARG00000007262	UPF3A	89	61.918	Sorex_araneus
ENSNGAG00000019314	Upf3a	55	61.826	ENSSPAG00000009989	upf3b	54	61.200	Stegastes_partitus
ENSNGAG00000019314	Upf3a	99	68.046	ENSSSCG00000024679	UPF3A	87	68.046	Sus_scrofa
ENSNGAG00000019314	Upf3a	87	66.755	ENSTGUG00000009493	UPF3A	96	66.755	Taeniopygia_guttata
ENSNGAG00000019314	Upf3a	95	54.146	ENSTRUG00000012730	upf3a	88	52.668	Takifugu_rubripes
ENSNGAG00000019314	Upf3a	79	51.497	ENSTNIG00000014973	upf3a	86	52.174	Tetraodon_nigroviridis
ENSNGAG00000019314	Upf3a	68	62.963	ENSTBEG00000017186	-	94	62.963	Tupaia_belangeri
ENSNGAG00000019314	Upf3a	99	59.540	ENSTTRG00000015414	UPF3A	91	59.540	Tursiops_truncatus
ENSNGAG00000019314	Upf3a	84	68.579	ENSVPAG00000003525	UPF3A	89	68.579	Vicugna_pacos
ENSNGAG00000019314	Upf3a	100	68.192	ENSVVUG00000013538	UPF3A	88	68.192	Vulpes_vulpes
ENSNGAG00000019314	Upf3a	66	51.042	ENSXETG00000007440	upf3b	91	66.822	Xenopus_tropicalis
ENSNGAG00000019314	Upf3a	86	53.804	ENSXETG00000002572	upf3a	87	52.800	Xenopus_tropicalis
ENSNGAG00000019314	Upf3a	95	56.188	ENSXMAG00000013452	upf3a	84	56.188	Xiphophorus_maculatus