EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSNGAG00000019833 (Gene tree)
Gene ID: 103738474
Gene Symbol: Smn1
Alias: SMN
Full Name: survival of motor neuron 1%2C telomeric
Gene Type: protein_coding
Species: Nannospalax_galili
Status: putative
Strand: Plus strand
Length: 22069 bases
Position: chrKL201678.1:3378466-3400534
Accession: 103738474
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNGAP00000020285	SMN	PF06003.12	3.7e-104	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNGAT00000025954	-	1248	XM_008838485	ENSNGAP00000020285	289 (aa)	XP_008836707	UPI0004ED3C23

Gene Model

Click here to download ENSNGAG00000019833's gene model file

Pathways

Pathway ID	Pathway Name	Source
ngi03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSNGAG00000019833's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNGAG00000019833	Smn1	97	84.342	ENSG00000172062	SMN1	99	83.154	Homo_sapiens
ENSNGAG00000019833	Smn1	97	84.342	ENSG00000205571	SMN2	99	83.513	Homo_sapiens
ENSNGAG00000019833	Smn1	93	53.455	ENSAPOG00000011324	smn1	94	52.364	Acanthochromis_polyacanthus
ENSNGAG00000019833	Smn1	97	85.106	ENSAMEG00000003316	-	96	84.483	Ailuropoda_melanoleuca
ENSNGAG00000019833	Smn1	89	50.000	ENSACIG00000019772	-	97	49.248	Amphilophus_citrinellus
ENSNGAG00000019833	Smn1	93	51.799	ENSAOCG00000024444	smn1	94	50.909	Amphiprion_ocellaris
ENSNGAG00000019833	Smn1	93	52.158	ENSAPEG00000016504	smn1	94	51.273	Amphiprion_percula
ENSNGAG00000019833	Smn1	90	52.768	ENSATEG00000002182	smn1	79	52.416	Anabas_testudineus
ENSNGAG00000019833	Smn1	69	57.000	ENSAPLG00000010912	-	97	55.556	Anas_platyrhynchos
ENSNGAG00000019833	Smn1	94	55.957	ENSACAG00000010017	-	95	56.475	Anolis_carolinensis
ENSNGAG00000019833	Smn1	99	80.612	ENSANAG00000032133	-	99	80.612	Aotus_nancymaae
ENSNGAG00000019833	Smn1	93	49.814	ENSACLG00000007308	smn1	88	52.453	Astatotilapia_calliptera
ENSNGAG00000019833	Smn1	95	48.736	ENSAMXG00000013884	smn1	98	50.177	Astyanax_mexicanus
ENSNGAG00000019833	Smn1	97	81.071	ENSBTAG00000005743	SMN2	99	78.596	Bos_taurus
ENSNGAG00000019833	Smn1	97	82.270	ENSCJAG00000016290	-	99	81.229	Callithrix_jacchus
ENSNGAG00000019833	Smn1	100	83.448	ENSCAFG00000007812	SMN	100	83.448	Canis_familiaris
ENSNGAG00000019833	Smn1	99	83.391	ENSCAFG00020019229	-	93	83.391	Canis_lupus_dingo
ENSNGAG00000019833	Smn1	97	81.915	ENSCHIG00000015559	-	97	79.094	Capra_hircus
ENSNGAG00000019833	Smn1	99	84.722	ENSTSYG00000012058	-	99	85.227	Carlito_syrichta
ENSNGAG00000019833	Smn1	75	66.972	ENSCAPG00000011021	-	96	68.493	Cavia_aperea
ENSNGAG00000019833	Smn1	100	77.891	ENSCPOG00000036973	-	100	77.891	Cavia_porcellus
ENSNGAG00000019833	Smn1	98	77.663	ENSCPOG00000012328	-	98	77.663	Cavia_porcellus
ENSNGAG00000019833	Smn1	97	82.500	ENSCCAG00000018127	-	99	81.443	Cebus_capucinus
ENSNGAG00000019833	Smn1	97	85.053	ENSCATG00000037002	-	99	84.229	Cercocebus_atys
ENSNGAG00000019833	Smn1	100	75.168	ENSCLAG00000000284	-	100	75.168	Chinchilla_lanigera
ENSNGAG00000019833	Smn1	97	85.053	ENSCSAG00000015688	-	99	83.562	Chlorocebus_sabaeus
ENSNGAG00000019833	Smn1	87	73.016	ENSCHOG00000007346	-	100	72.222	Choloepus_hoffmanni
ENSNGAG00000019833	Smn1	93	61.538	ENSCPBG00000010968	-	96	61.832	Chrysemys_picta_bellii
ENSNGAG00000019833	Smn1	97	85.000	ENSCANG00000038242	-	100	84.173	Colobus_angolensis_palliatus
ENSNGAG00000019833	Smn1	95	79.004	ENSCANG00000033324	-	95	80.071	Colobus_angolensis_palliatus
ENSNGAG00000019833	Smn1	100	67.474	ENSCGRG00001016998	-	100	68.166	Cricetulus_griseus_chok1gshd
ENSNGAG00000019833	Smn1	100	88.235	ENSCGRG00001017959	-	100	88.235	Cricetulus_griseus_chok1gshd
ENSNGAG00000019833	Smn1	100	88.235	ENSCGRG00000007698	Smn1	100	88.235	Cricetulus_griseus_crigri
ENSNGAG00000019833	Smn1	93	48.070	ENSCSEG00000015227	smn1	97	49.470	Cynoglossus_semilaevis
ENSNGAG00000019833	Smn1	93	52.536	ENSCVAG00000007498	smn1	95	50.357	Cyprinodon_variegatus
ENSNGAG00000019833	Smn1	94	50.178	ENSDARG00000018494	smn1	96	50.171	Danio_rerio
ENSNGAG00000019833	Smn1	77	70.982	ENSDNOG00000045949	-	94	70.982	Dasypus_novemcinctus
ENSNGAG00000019833	Smn1	83	81.818	ENSDNOG00000007283	-	100	81.818	Dasypus_novemcinctus
ENSNGAG00000019833	Smn1	100	76.109	ENSDORG00000007082	Smn1	99	76.109	Dipodomys_ordii
ENSNGAG00000019833	Smn1	71	68.447	ENSETEG00000001406	-	100	68.447	Echinops_telfairi
ENSNGAG00000019833	Smn1	93	38.591	ENSEBUG00000011902	smn1	94	37.676	Eptatretus_burgeri
ENSNGAG00000019833	Smn1	94	75.824	ENSEASG00005018000	-	96	75.824	Equus_asinus_asinus
ENSNGAG00000019833	Smn1	100	82.131	ENSECAG00000015215	-	100	82.131	Equus_caballus
ENSNGAG00000019833	Smn1	87	77.291	ENSEEUG00000015777	-	100	77.291	Erinaceus_europaeus
ENSNGAG00000019833	Smn1	94	53.737	ENSELUG00000018067	smn1	96	50.890	Esox_lucius
ENSNGAG00000019833	Smn1	100	83.793	ENSFCAG00000028292	SMN	100	83.793	Felis_catus
ENSNGAG00000019833	Smn1	93	59.636	ENSFALG00000012320	-	95	59.636	Ficedula_albicollis
ENSNGAG00000019833	Smn1	100	77.517	ENSFDAG00000017683	-	100	77.517	Fukomys_damarensis
ENSNGAG00000019833	Smn1	58	52.601	ENSFHEG00000018508	smn1	97	50.000	Fundulus_heteroclitus
ENSNGAG00000019833	Smn1	98	46.503	ENSGMOG00000017279	smn1	99	42.414	Gadus_morhua
ENSNGAG00000019833	Smn1	93	58.759	ENSGALG00000002430	SMN	95	58.974	Gallus_gallus
ENSNGAG00000019833	Smn1	93	51.825	ENSGAFG00000009501	smn1	94	49.817	Gambusia_affinis
ENSNGAG00000019833	Smn1	93	48.897	ENSGACG00000010584	smn1	91	52.239	Gasterosteus_aculeatus
ENSNGAG00000019833	Smn1	93	61.172	ENSGAGG00000011374	-	94	61.538	Gopherus_agassizii
ENSNGAG00000019833	Smn1	96	35.185	ENSGAGG00000013639	-	91	36.098	Gopherus_agassizii
ENSNGAG00000019833	Smn1	63	83.696	ENSGGOG00000026704	-	99	81.221	Gorilla_gorilla
ENSNGAG00000019833	Smn1	95	72.563	ENSGGOG00000003872	-	100	74.101	Gorilla_gorilla
ENSNGAG00000019833	Smn1	92	52.612	ENSHBUG00000013987	smn1	94	52.920	Haplochromis_burtoni
ENSNGAG00000019833	Smn1	98	77.586	ENSHGLG00000001018	-	97	77.586	Heterocephalus_glaber_female
ENSNGAG00000019833	Smn1	98	76.842	ENSHGLG00000001905	-	99	76.842	Heterocephalus_glaber_female
ENSNGAG00000019833	Smn1	94	77.289	ENSHGLG00100018676	-	99	77.289	Heterocephalus_glaber_male
ENSNGAG00000019833	Smn1	98	77.586	ENSHGLG00100011252	-	97	77.586	Heterocephalus_glaber_male
ENSNGAG00000019833	Smn1	90	50.370	ENSHCOG00000017136	smn1	87	50.376	Hippocampus_comes
ENSNGAG00000019833	Smn1	98	50.000	ENSIPUG00000012580	smn1	89	50.512	Ictalurus_punctatus
ENSNGAG00000019833	Smn1	91	87.170	ENSSTOG00000012288	-	100	85.252	Ictidomys_tridecemlineatus
ENSNGAG00000019833	Smn1	60	63.584	ENSJJAG00000014853	-	100	64.211	Jaculus_jaculus
ENSNGAG00000019833	Smn1	93	51.301	ENSKMAG00000007239	smn1	96	52.107	Kryptolebias_marmoratus
ENSNGAG00000019833	Smn1	93	52.688	ENSLBEG00000022550	smn1	94	52.747	Labrus_bergylta
ENSNGAG00000019833	Smn1	95	34.737	ENSLACG00000009808	-	92	36.972	Latimeria_chalumnae
ENSNGAG00000019833	Smn1	93	52.015	ENSLOCG00000011339	smn1	95	52.128	Lepisosteus_oculatus
ENSNGAG00000019833	Smn1	100	81.973	ENSLAFG00000003425	-	96	81.973	Loxodonta_africana
ENSNGAG00000019833	Smn1	97	80.783	ENSMFAG00000008812	-	99	79.452	Macaca_fascicularis
ENSNGAG00000019833	Smn1	97	85.765	ENSMFAG00000031523	SMN1	99	84.946	Macaca_fascicularis
ENSNGAG00000019833	Smn1	97	85.765	ENSMMUG00000020214	SMN1	99	84.946	Macaca_mulatta
ENSNGAG00000019833	Smn1	97	80.071	ENSMMUG00000030594	-	99	78.767	Macaca_mulatta
ENSNGAG00000019833	Smn1	97	85.409	ENSMNEG00000035094	-	99	84.946	Macaca_nemestrina
ENSNGAG00000019833	Smn1	76	72.851	ENSMNEG00000036423	-	86	72.398	Macaca_nemestrina
ENSNGAG00000019833	Smn1	95	86.282	ENSMLEG00000041902	-	99	84.946	Mandrillus_leucophaeus
ENSNGAG00000019833	Smn1	92	52.015	ENSMAMG00000011034	smn1	94	52.727	Mastacembelus_armatus
ENSNGAG00000019833	Smn1	92	52.612	ENSMZEG00005013634	smn1	94	52.555	Maylandia_zebra
ENSNGAG00000019833	Smn1	68	56.000	ENSMGAG00000008889	-	95	56.373	Meleagris_gallopavo
ENSNGAG00000019833	Smn1	100	86.159	ENSMAUG00000010262	Smn1	100	86.159	Mesocricetus_auratus
ENSNGAG00000019833	Smn1	82	82.305	ENSMICG00000034708	-	100	83.516	Microcebus_murinus
ENSNGAG00000019833	Smn1	100	84.429	ENSMOCG00000017833	Smn1	100	84.429	Microtus_ochrogaster
ENSNGAG00000019833	Smn1	93	48.699	ENSMMOG00000005504	smn1	96	50.370	Mola_mola
ENSNGAG00000019833	Smn1	100	66.894	ENSMODG00000001436	-	99	66.894	Monodelphis_domestica
ENSNGAG00000019833	Smn1	93	50.530	ENSMALG00000008025	smn1	95	51.087	Monopterus_albus
ENSNGAG00000019833	Smn1	100	85.172	MGP_CAROLIEiJ_G0018836	Smn1	100	85.517	Mus_caroli
ENSNGAG00000019833	Smn1	100	84.828	ENSMUSG00000021645	Smn1	100	85.172	Mus_musculus
ENSNGAG00000019833	Smn1	100	83.045	MGP_PahariEiJ_G0015911	Smn1	100	84.083	Mus_pahari
ENSNGAG00000019833	Smn1	100	84.483	MGP_SPRETEiJ_G0019718	Smn1	100	84.828	Mus_spretus
ENSNGAG00000019833	Smn1	95	86.232	ENSMPUG00000014470	-	98	86.232	Mustela_putorius_furo
ENSNGAG00000019833	Smn1	97	83.737	ENSMLUG00000010603	-	96	82.609	Myotis_lucifugus
ENSNGAG00000019833	Smn1	92	49.814	ENSNBRG00000023000	smn1	94	53.114	Neolamprologus_brichardi
ENSNGAG00000019833	Smn1	99	82.534	ENSNLEG00000004454	-	99	82.796	Nomascus_leucogenys
ENSNGAG00000019833	Smn1	78	63.877	ENSMEUG00000011393	-	99	66.376	Notamacropus_eugenii
ENSNGAG00000019833	Smn1	87	78.656	ENSOPRG00000002015	-	100	80.237	Ochotona_princeps
ENSNGAG00000019833	Smn1	95	80.000	ENSODEG00000015976	-	97	80.000	Octodon_degus
ENSNGAG00000019833	Smn1	93	50.185	ENSONIG00000011799	smn1	95	51.957	Oreochromis_niloticus
ENSNGAG00000019833	Smn1	94	63.406	ENSOANG00000001626	-	96	64.875	Ornithorhynchus_anatinus
ENSNGAG00000019833	Smn1	99	80.339	ENSOCUG00000026649	-	99	80.678	Oryctolagus_cuniculus
ENSNGAG00000019833	Smn1	99	76.531	ENSOCUG00000025183	-	100	76.271	Oryctolagus_cuniculus
ENSNGAG00000019833	Smn1	100	82.818	ENSOCUG00000017097	-	99	82.818	Oryctolagus_cuniculus
ENSNGAG00000019833	Smn1	54	57.692	ENSORLG00000010552	smn1	94	51.838	Oryzias_latipes
ENSNGAG00000019833	Smn1	93	50.746	ENSORLG00020007936	smn1	94	47.037	Oryzias_latipes_hni
ENSNGAG00000019833	Smn1	93	49.270	ENSORLG00015022425	smn1	94	51.471	Oryzias_latipes_hsok
ENSNGAG00000019833	Smn1	93	48.736	ENSOMEG00000007824	smn1	94	52.920	Oryzias_melastigma
ENSNGAG00000019833	Smn1	92	75.824	ENSOGAG00000031414	-	96	75.451	Otolemur_garnettii
ENSNGAG00000019833	Smn1	95	79.273	ENSOARG00000005425	-	100	77.455	Ovis_aries
ENSNGAG00000019833	Smn1	97	83.986	ENSPPAG00000036640	-	99	83.154	Pan_paniscus
ENSNGAG00000019833	Smn1	100	84.138	ENSPPRG00000005575	-	100	84.138	Panthera_pardus
ENSNGAG00000019833	Smn1	100	84.192	ENSPTIG00000007745	-	100	83.849	Panthera_tigris_altaica
ENSNGAG00000019833	Smn1	97	83.099	ENSPTRG00000016955	-	99	82.270	Pan_troglodytes
ENSNGAG00000019833	Smn1	96	80.216	ENSPANG00000000253	-	98	79.585	Papio_anubis
ENSNGAG00000019833	Smn1	99	84.589	ENSPANG00000013601	-	99	84.247	Papio_anubis
ENSNGAG00000019833	Smn1	94	50.877	ENSPKIG00000011096	smn1	97	49.825	Paramormyrops_kingsleyae
ENSNGAG00000019833	Smn1	90	60.227	ENSPSIG00000014787	-	83	60.227	Pelodiscus_sinensis
ENSNGAG00000019833	Smn1	93	44.211	ENSPMGG00000012285	smn1	94	50.000	Periophthalmus_magnuspinnatus
ENSNGAG00000019833	Smn1	90	42.254	ENSPMAG00000005004	smn1	95	41.754	Petromyzon_marinus
ENSNGAG00000019833	Smn1	99	67.014	ENSPCIG00000025764	-	99	67.014	Phascolarctos_cinereus
ENSNGAG00000019833	Smn1	93	51.064	ENSPFOG00000007786	smn1	94	50.916	Poecilia_formosa
ENSNGAG00000019833	Smn1	93	51.418	ENSPLAG00000012071	smn1	94	51.282	Poecilia_latipinna
ENSNGAG00000019833	Smn1	93	51.064	ENSPMEG00000017085	smn1	94	50.916	Poecilia_mexicana
ENSNGAG00000019833	Smn1	93	53.285	ENSPREG00000005824	smn1	94	51.282	Poecilia_reticulata
ENSNGAG00000019833	Smn1	86	56.627	ENSPPYG00000019189	-	99	53.815	Pongo_abelii
ENSNGAG00000019833	Smn1	93	82.657	ENSPPYG00000015533	-	98	82.288	Pongo_abelii
ENSNGAG00000019833	Smn1	92	78.598	ENSPCAG00000004187	-	100	78.598	Procavia_capensis
ENSNGAG00000019833	Smn1	69	81.373	ENSPCOG00000022307	-	100	69.697	Propithecus_coquereli
ENSNGAG00000019833	Smn1	97	85.714	ENSPVAG00000005977	-	100	83.959	Pteropus_vampyrus
ENSNGAG00000019833	Smn1	92	49.814	ENSPNYG00000014148	smn1	94	53.114	Pundamilia_nyererei
ENSNGAG00000019833	Smn1	99	48.464	ENSPNAG00000014007	smn1	89	47.712	Pygocentrus_nattereri
ENSNGAG00000019833	Smn1	100	84.828	ENSRNOG00000018067	Smn1	100	84.828	Rattus_norvegicus
ENSNGAG00000019833	Smn1	97	85.409	ENSRBIG00000037052	-	99	83.904	Rhinopithecus_bieti
ENSNGAG00000019833	Smn1	95	70.714	ENSRBIG00000036775	-	95	72.143	Rhinopithecus_bieti
ENSNGAG00000019833	Smn1	99	68.729	ENSRROG00000031088	-	99	70.103	Rhinopithecus_roxellana
ENSNGAG00000019833	Smn1	97	85.409	ENSRROG00000039399	-	99	84.588	Rhinopithecus_roxellana
ENSNGAG00000019833	Smn1	97	80.357	ENSSBOG00000011665	-	99	80.069	Saimiri_boliviensis_boliviensis
ENSNGAG00000019833	Smn1	84	76.096	ENSSBOG00000020112	-	93	72.119	Saimiri_boliviensis_boliviensis
ENSNGAG00000019833	Smn1	100	67.235	ENSSHAG00000001499	-	97	68.030	Sarcophilus_harrisii
ENSNGAG00000019833	Smn1	93	51.282	ENSSFOG00015015507	smn1	95	51.613	Scleropages_formosus
ENSNGAG00000019833	Smn1	93	50.183	ENSSMAG00000007922	smn1	94	49.451	Scophthalmus_maximus
ENSNGAG00000019833	Smn1	93	51.460	ENSSDUG00000018533	smn1	94	52.920	Seriola_dumerili
ENSNGAG00000019833	Smn1	93	51.825	ENSSLDG00000021135	smn1	94	53.285	Seriola_lalandi_dorsalis
ENSNGAG00000019833	Smn1	96	61.429	ENSSPUG00000000373	-	95	62.857	Sphenodon_punctatus
ENSNGAG00000019833	Smn1	93	49.254	ENSSPAG00000004345	smn1	94	50.538	Stegastes_partitus
ENSNGAG00000019833	Smn1	74	55.607	ENSSSCG00000033865	-	91	55.825	Sus_scrofa
ENSNGAG00000019833	Smn1	97	83.688	ENSSSCG00000016970	-	100	82.253	Sus_scrofa
ENSNGAG00000019833	Smn1	97	62.724	ENSSSCG00000029127	-	96	61.972	Sus_scrofa
ENSNGAG00000019833	Smn1	94	58.423	ENSTGUG00000001548	-	100	58.423	Taeniopygia_guttata
ENSNGAG00000019833	Smn1	58	50.289	ENSTRUG00000000736	smn	96	46.520	Takifugu_rubripes
ENSNGAG00000019833	Smn1	93	47.038	ENSTNIG00000009892	smn1	95	47.143	Tetraodon_nigroviridis
ENSNGAG00000019833	Smn1	66	84.375	ENSTBEG00000002399	-	100	85.024	Tupaia_belangeri
ENSNGAG00000019833	Smn1	97	81.915	ENSTTRG00000005080	-	100	80.678	Tursiops_truncatus
ENSNGAG00000019833	Smn1	63	85.326	ENSUAMG00000024947	-	76	85.024	Ursus_americanus
ENSNGAG00000019833	Smn1	97	85.461	ENSUMAG00000007842	-	74	84.828	Ursus_maritimus
ENSNGAG00000019833	Smn1	92	74.812	ENSVPAG00000009887	-	97	74.721	Vicugna_pacos
ENSNGAG00000019833	Smn1	100	83.448	ENSVVUG00000006934	-	100	83.448	Vulpes_vulpes
ENSNGAG00000019833	Smn1	97	53.952	ENSXETG00000018189	smn2	98	54.209	Xenopus_tropicalis
ENSNGAG00000019833	Smn1	100	35.948	ENSXETG00000004912	-	77	65.517	Xenopus_tropicalis
ENSNGAG00000019833	Smn1	93	52.500	ENSXMAG00000001521	smn1	95	51.460	Xiphophorus_maculatus