EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSNGAG00000020316 (Gene tree)
Gene ID: -
Gene Symbol: Cmss1
Alias: 1110001A06Rik|2610528E23Rik|4930572F24Rik
Full Name: collagen alpha-1(VIII) chain
Gene Type: protein_coding
Species: Nannospalax_galili
Status: putative
Strand: Minus strand
Length: 406900 bases
Position: chrKL200443.1:442163-849062
Accession: 103732629
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNGAP00000020996	CMS1	PF14617.6	2.4e-33	1	1
ENSNGAP00000021002	CMS1	PF14617.6	2.8e-33	1	1
ENSNGAP00000020996	DEAD	PF00270.29	2.6e-06	1	1
ENSNGAP00000021002	DEAD	PF00270.29	2.9e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNGAT00000026671	-	840	XM_008831249	ENSNGAP00000020996	279 (aa)	XP_008829471	-
ENSNGAT00000026678	-	873	-	ENSNGAP00000021002	290 (aa)	-	-

Gene Model

Click here to download ENSNGAG00000020316's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSNGAG00000020316's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNGAG00000020316	Cmss1	100	84.588	ENSG00000184220	CMSS1	99	88.889	Homo_sapiens
ENSNGAG00000020316	Cmss1	72	62.871	ENSAPOG00000010604	cmss1	99	56.275	Acanthochromis_polyacanthus
ENSNGAG00000020316	Cmss1	92	85.714	ENSAMEG00000004092	CMSS1	100	85.714	Ailuropoda_melanoleuca
ENSNGAG00000020316	Cmss1	72	52.475	ENSACIG00000021854	cmss1	75	52.475	Amphilophus_citrinellus
ENSNGAG00000020316	Cmss1	100	51.195	ENSAOCG00000013361	cmss1	100	51.839	Amphiprion_ocellaris
ENSNGAG00000020316	Cmss1	100	52.759	ENSAPEG00000005829	cmss1	100	52.414	Amphiprion_percula
ENSNGAG00000020316	Cmss1	100	51.864	ENSATEG00000008209	cmss1	99	53.875	Anabas_testudineus
ENSNGAG00000020316	Cmss1	82	68.696	ENSAPLG00000010542	CMSS1	100	68.696	Anas_platyrhynchos
ENSNGAG00000020316	Cmss1	92	62.500	ENSACAG00000011065	CMSS1	97	62.500	Anolis_carolinensis
ENSNGAG00000020316	Cmss1	100	83.571	ENSANAG00000023565	CMSS1	99	84.942	Aotus_nancymaae
ENSNGAG00000020316	Cmss1	100	50.515	ENSACLG00000027294	cmss1	100	50.859	Astatotilapia_calliptera
ENSNGAG00000020316	Cmss1	100	47.157	ENSAMXG00000002046	cmss1	100	48.649	Astyanax_mexicanus
ENSNGAG00000020316	Cmss1	100	83.513	ENSBTAG00000013663	CMSS1	100	83.513	Bos_taurus
ENSNGAG00000020316	Cmss1	100	84.286	ENSCJAG00000000610	CMSS1	99	85.714	Callithrix_jacchus
ENSNGAG00000020316	Cmss1	93	87.645	ENSCAFG00000009230	CMSS1	94	87.645	Canis_familiaris
ENSNGAG00000020316	Cmss1	92	87.549	ENSCAFG00020009464	-	94	87.209	Canis_lupus_dingo
ENSNGAG00000020316	Cmss1	83	81.545	ENSCAFG00020024156	-	77	78.049	Canis_lupus_dingo
ENSNGAG00000020316	Cmss1	96	81.413	ENSCHIG00000013003	CMSS1	97	81.413	Capra_hircus
ENSNGAG00000020316	Cmss1	94	82.375	ENSTSYG00000009266	CMSS1	100	82.375	Carlito_syrichta
ENSNGAG00000020316	Cmss1	80	68.996	ENSCAPG00000013584	CMSS1	100	68.559	Cavia_aperea
ENSNGAG00000020316	Cmss1	100	82.079	ENSCPOG00000014680	CMSS1	100	82.079	Cavia_porcellus
ENSNGAG00000020316	Cmss1	100	85.357	ENSCCAG00000034685	CMSS1	99	86.486	Cebus_capucinus
ENSNGAG00000020316	Cmss1	100	84.946	ENSCATG00000031980	CMSS1	100	84.946	Cercocebus_atys
ENSNGAG00000020316	Cmss1	82	89.083	ENSCLAG00000011241	CMSS1	98	89.083	Chinchilla_lanigera
ENSNGAG00000020316	Cmss1	87	86.885	ENSCSAG00000006024	CMSS1	99	86.885	Chlorocebus_sabaeus
ENSNGAG00000020316	Cmss1	100	65.950	ENSCHOG00000012098	CMSS1	100	65.950	Choloepus_hoffmanni
ENSNGAG00000020316	Cmss1	71	41.206	ENSCING00000014848	-	100	41.711	Ciona_intestinalis
ENSNGAG00000020316	Cmss1	100	84.229	ENSCANG00000031337	CMSS1	99	85.271	Colobus_angolensis_palliatus
ENSNGAG00000020316	Cmss1	100	84.588	ENSCGRG00001014305	Cmss1	100	84.588	Cricetulus_griseus_chok1gshd
ENSNGAG00000020316	Cmss1	92	85.938	ENSCGRG00000006722	Cmss1	99	85.938	Cricetulus_griseus_crigri
ENSNGAG00000020316	Cmss1	100	49.832	ENSCSEG00000004958	cmss1	100	50.680	Cynoglossus_semilaevis
ENSNGAG00000020316	Cmss1	100	50.173	ENSCVAG00000005039	cmss1	100	50.347	Cyprinodon_variegatus
ENSNGAG00000020316	Cmss1	100	47.000	ENSDARG00000112579	cmss1	100	48.649	Danio_rerio
ENSNGAG00000020316	Cmss1	94	82.443	ENSDNOG00000040418	CMSS1	92	82.625	Dasypus_novemcinctus
ENSNGAG00000020316	Cmss1	100	83.871	ENSDORG00000010461	Cmss1	100	83.871	Dipodomys_ordii
ENSNGAG00000020316	Cmss1	96	77.407	ENSEASG00005010966	CMSS1	99	87.215	Equus_asinus_asinus
ENSNGAG00000020316	Cmss1	93	83.012	ENSECAG00000015662	CMSS1	99	86.283	Equus_caballus
ENSNGAG00000020316	Cmss1	100	53.047	ENSEEUG00000007624	-	100	53.405	Erinaceus_europaeus
ENSNGAG00000020316	Cmss1	100	51.667	ENSELUG00000019459	cmss1	100	53.333	Esox_lucius
ENSNGAG00000020316	Cmss1	100	87.455	ENSFCAG00000044577	CMSS1	100	87.455	Felis_catus
ENSNGAG00000020316	Cmss1	85	64.979	ENSFALG00000005816	CMSS1	100	64.979	Ficedula_albicollis
ENSNGAG00000020316	Cmss1	82	87.281	ENSFDAG00000012577	CMSS1	100	87.281	Fukomys_damarensis
ENSNGAG00000020316	Cmss1	81	60.000	ENSFHEG00000012008	cmss1	95	60.000	Fundulus_heteroclitus
ENSNGAG00000020316	Cmss1	99	52.817	ENSGMOG00000016729	cmss1	100	52.669	Gadus_morhua
ENSNGAG00000020316	Cmss1	96	63.060	ENSGALG00000015267	CMSS1	100	63.985	Gallus_gallus
ENSNGAG00000020316	Cmss1	74	61.836	ENSGAFG00000021217	cmss1	77	61.881	Gambusia_affinis
ENSNGAG00000020316	Cmss1	99	47.670	ENSGACG00000002798	cmss1	100	48.029	Gasterosteus_aculeatus
ENSNGAG00000020316	Cmss1	92	65.267	ENSGAGG00000019861	CMSS1	100	64.286	Gopherus_agassizii
ENSNGAG00000020316	Cmss1	93	85.714	ENSGGOG00000014125	CMSS1	99	86.047	Gorilla_gorilla
ENSNGAG00000020316	Cmss1	100	49.829	ENSHBUG00000008431	cmss1	100	51.379	Haplochromis_burtoni
ENSNGAG00000020316	Cmss1	89	83.936	ENSHGLG00000019481	CMSS1	98	83.936	Heterocephalus_glaber_female
ENSNGAG00000020316	Cmss1	92	82.879	ENSHGLG00100010314	CMSS1	100	82.879	Heterocephalus_glaber_male
ENSNGAG00000020316	Cmss1	100	53.488	ENSHCOG00000003222	cmss1	100	53.220	Hippocampus_comes
ENSNGAG00000020316	Cmss1	100	48.475	ENSIPUG00000011591	cmss1	100	49.153	Ictalurus_punctatus
ENSNGAG00000020316	Cmss1	100	86.380	ENSSTOG00000019366	CMSS1	100	86.380	Ictidomys_tridecemlineatus
ENSNGAG00000020316	Cmss1	100	84.229	ENSJJAG00000014894	Cmss1	100	84.229	Jaculus_jaculus
ENSNGAG00000020316	Cmss1	72	52.475	ENSKMAG00000002390	cmss1	81	52.475	Kryptolebias_marmoratus
ENSNGAG00000020316	Cmss1	72	57.635	ENSLBEG00000006298	cmss1	83	57.635	Labrus_bergylta
ENSNGAG00000020316	Cmss1	82	64.348	ENSLACG00000009293	CMSS1	100	64.348	Latimeria_chalumnae
ENSNGAG00000020316	Cmss1	100	51.237	ENSLOCG00000009391	cmss1	100	51.943	Lepisosteus_oculatus
ENSNGAG00000020316	Cmss1	82	85.088	ENSLAFG00000017509	CMSS1	100	85.088	Loxodonta_africana
ENSNGAG00000020316	Cmss1	100	84.946	ENSMFAG00000045006	CMSS1	99	86.047	Macaca_fascicularis
ENSNGAG00000020316	Cmss1	100	84.588	ENSMMUG00000002939	CMSS1	98	87.273	Macaca_mulatta
ENSNGAG00000020316	Cmss1	100	84.588	ENSMNEG00000031315	CMSS1	99	85.659	Macaca_nemestrina
ENSNGAG00000020316	Cmss1	100	84.229	ENSMLEG00000033660	CMSS1	99	85.271	Mandrillus_leucophaeus
ENSNGAG00000020316	Cmss1	100	52.041	ENSMAMG00000017176	cmss1	100	53.448	Mastacembelus_armatus
ENSNGAG00000020316	Cmss1	100	50.515	ENSMZEG00005021886	cmss1	100	50.859	Maylandia_zebra
ENSNGAG00000020316	Cmss1	82	67.982	ENSMGAG00000014360	CMSS1	100	67.982	Meleagris_gallopavo
ENSNGAG00000020316	Cmss1	100	60.932	ENSMAUG00000020609	Cmss1	100	60.932	Mesocricetus_auratus
ENSNGAG00000020316	Cmss1	100	86.022	ENSMICG00000048977	CMSS1	100	86.022	Microcebus_murinus
ENSNGAG00000020316	Cmss1	100	83.154	ENSMOCG00000021937	Cmss1	100	83.154	Microtus_ochrogaster
ENSNGAG00000020316	Cmss1	72	59.901	ENSMMOG00000019794	cmss1	84	59.901	Mola_mola
ENSNGAG00000020316	Cmss1	92	72.308	ENSMODG00000002275	CMSS1	97	72.308	Monodelphis_domestica
ENSNGAG00000020316	Cmss1	100	52.577	ENSMALG00000004250	cmss1	100	52.901	Monopterus_albus
ENSNGAG00000020316	Cmss1	100	83.571	MGP_CAROLIEiJ_G0020824	Cmss1	100	83.571	Mus_caroli
ENSNGAG00000020316	Cmss1	100	84.643	ENSMUSG00000022748	Cmss1	100	84.643	Mus_musculus
ENSNGAG00000020316	Cmss1	100	83.929	MGP_PahariEiJ_G0016524	Cmss1	100	83.929	Mus_pahari
ENSNGAG00000020316	Cmss1	100	83.929	MGP_SPRETEiJ_G0021724	Cmss1	100	83.929	Mus_spretus
ENSNGAG00000020316	Cmss1	92	88.372	ENSMPUG00000011324	CMSS1	99	88.716	Mustela_putorius_furo
ENSNGAG00000020316	Cmss1	93	87.356	ENSMLUG00000001131	CMSS1	99	87.356	Myotis_lucifugus
ENSNGAG00000020316	Cmss1	100	50.169	ENSNBRG00000003095	cmss1	100	50.515	Neolamprologus_brichardi
ENSNGAG00000020316	Cmss1	100	86.022	ENSNLEG00000034172	CMSS1	99	87.209	Nomascus_leucogenys
ENSNGAG00000020316	Cmss1	82	64.035	ENSMEUG00000014505	CMSS1	100	64.035	Notamacropus_eugenii
ENSNGAG00000020316	Cmss1	100	85.305	ENSOPRG00000002986	CMSS1	100	85.305	Ochotona_princeps
ENSNGAG00000020316	Cmss1	100	71.685	ENSODEG00000001853	-	100	71.685	Octodon_degus
ENSNGAG00000020316	Cmss1	100	65.950	ENSODEG00000009446	-	100	65.950	Octodon_degus
ENSNGAG00000020316	Cmss1	100	76.868	ENSODEG00000003558	-	100	76.868	Octodon_degus
ENSNGAG00000020316	Cmss1	100	81.362	ENSODEG00000005226	-	100	81.362	Octodon_degus
ENSNGAG00000020316	Cmss1	72	59.406	ENSONIG00000006678	cmss1	77	59.406	Oreochromis_niloticus
ENSNGAG00000020316	Cmss1	92	71.538	ENSOANG00000007529	CMSS1	100	74.678	Ornithorhynchus_anatinus
ENSNGAG00000020316	Cmss1	93	86.100	ENSOCUG00000025366	CMSS1	94	86.100	Oryctolagus_cuniculus
ENSNGAG00000020316	Cmss1	100	52.982	ENSORLG00000020340	cmss1	100	54.355	Oryzias_latipes
ENSNGAG00000020316	Cmss1	82	52.838	ENSORLG00020012235	cmss1	85	55.446	Oryzias_latipes_hni
ENSNGAG00000020316	Cmss1	72	54.950	ENSORLG00015015551	cmss1	75	54.950	Oryzias_latipes_hsok
ENSNGAG00000020316	Cmss1	100	52.881	ENSOMEG00000012555	cmss1	100	53.979	Oryzias_melastigma
ENSNGAG00000020316	Cmss1	82	88.158	ENSOGAG00000002045	CMSS1	100	88.158	Otolemur_garnettii
ENSNGAG00000020316	Cmss1	99	77.241	ENSOARG00000017899	CMSS1	99	77.241	Ovis_aries
ENSNGAG00000020316	Cmss1	92	86.047	ENSPPAG00000038515	CMSS1	95	86.047	Pan_paniscus
ENSNGAG00000020316	Cmss1	100	86.380	ENSPPRG00000016767	CMSS1	100	86.380	Panthera_pardus
ENSNGAG00000020316	Cmss1	100	86.022	ENSPTIG00000018274	CMSS1	100	86.022	Panthera_tigris_altaica
ENSNGAG00000020316	Cmss1	100	84.229	ENSPTRG00000015157	CMSS1	99	86.885	Pan_troglodytes
ENSNGAG00000020316	Cmss1	93	81.923	ENSPANG00000019980	CMSS1	100	81.923	Papio_anubis
ENSNGAG00000020316	Cmss1	95	53.818	ENSPKIG00000012609	cmss1	99	55.056	Paramormyrops_kingsleyae
ENSNGAG00000020316	Cmss1	82	71.179	ENSPSIG00000003849	CMSS1	100	71.179	Pelodiscus_sinensis
ENSNGAG00000020316	Cmss1	84	56.356	ENSPMGG00000010286	cmss1	100	56.356	Periophthalmus_magnuspinnatus
ENSNGAG00000020316	Cmss1	100	86.071	ENSPEMG00000016384	Cmss1	100	86.071	Peromyscus_maniculatus_bairdii
ENSNGAG00000020316	Cmss1	73	54.412	ENSPMAG00000001146	cmss1	99	54.950	Petromyzon_marinus
ENSNGAG00000020316	Cmss1	92	71.923	ENSPCIG00000015656	CMSS1	100	70.833	Phascolarctos_cinereus
ENSNGAG00000020316	Cmss1	100	51.557	ENSPFOG00000016849	cmss1	100	50.699	Poecilia_formosa
ENSNGAG00000020316	Cmss1	100	51.211	ENSPLAG00000008323	cmss1	100	50.350	Poecilia_latipinna
ENSNGAG00000020316	Cmss1	100	51.903	ENSPMEG00000021020	cmss1	100	51.736	Poecilia_mexicana
ENSNGAG00000020316	Cmss1	84	56.846	ENSPREG00000007618	cmss1	98	50.871	Poecilia_reticulata
ENSNGAG00000020316	Cmss1	100	85.663	ENSPPYG00000013606	CMSS1	100	85.663	Pongo_abelii
ENSNGAG00000020316	Cmss1	100	87.097	ENSPCOG00000020035	CMSS1	100	87.097	Propithecus_coquereli
ENSNGAG00000020316	Cmss1	100	74.194	ENSPVAG00000017031	CMSS1	100	74.194	Pteropus_vampyrus
ENSNGAG00000020316	Cmss1	91	50.943	ENSPNYG00000013428	cmss1	97	51.321	Pundamilia_nyererei
ENSNGAG00000020316	Cmss1	100	49.320	ENSPNAG00000007912	cmss1	100	50.000	Pygocentrus_nattereri
ENSNGAG00000020316	Cmss1	93	84.231	ENSRNOG00000027888	Cmss1	100	84.231	Rattus_norvegicus
ENSNGAG00000020316	Cmss1	100	83.513	ENSRBIG00000037931	CMSS1	100	83.513	Rhinopithecus_bieti
ENSNGAG00000020316	Cmss1	100	83.513	ENSRROG00000042910	CMSS1	100	83.513	Rhinopithecus_roxellana
ENSNGAG00000020316	Cmss1	100	80.357	ENSSBOG00000030980	CMSS1	99	85.385	Saimiri_boliviensis_boliviensis
ENSNGAG00000020316	Cmss1	89	73.016	ENSSHAG00000009321	CMSS1	99	73.016	Sarcophilus_harrisii
ENSNGAG00000020316	Cmss1	100	53.559	ENSSFOG00015001509	cmss1	100	52.721	Scleropages_formosus
ENSNGAG00000020316	Cmss1	100	52.234	ENSSMAG00000001653	cmss1	100	52.234	Scophthalmus_maximus
ENSNGAG00000020316	Cmss1	100	52.921	ENSSDUG00000007719	cmss1	100	54.296	Seriola_dumerili
ENSNGAG00000020316	Cmss1	74	62.319	ENSSLDG00000012300	cmss1	99	50.207	Seriola_lalandi_dorsalis
ENSNGAG00000020316	Cmss1	100	70.000	ENSSARG00000003584	CMSS1	100	70.000	Sorex_araneus
ENSNGAG00000020316	Cmss1	81	68.584	ENSSPUG00000003865	CMSS1	100	68.584	Sphenodon_punctatus
ENSNGAG00000020316	Cmss1	74	62.621	ENSSPAG00000019182	cmss1	83	52.416	Stegastes_partitus
ENSNGAG00000020316	Cmss1	100	87.814	ENSSSCG00000011970	CMSS1	100	87.814	Sus_scrofa
ENSNGAG00000020316	Cmss1	82	65.066	ENSTGUG00000013635	CMSS1	100	65.066	Taeniopygia_guttata
ENSNGAG00000020316	Cmss1	100	47.959	ENSTRUG00000015265	cmss1	100	49.291	Takifugu_rubripes
ENSNGAG00000020316	Cmss1	72	55.446	ENSTNIG00000002880	cmss1	73	55.446	Tetraodon_nigroviridis
ENSNGAG00000020316	Cmss1	100	58.571	ENSTBEG00000016722	CMSS1	100	58.571	Tupaia_belangeri
ENSNGAG00000020316	Cmss1	100	82.079	ENSTTRG00000001562	CMSS1	100	82.079	Tursiops_truncatus
ENSNGAG00000020316	Cmss1	97	83.577	ENSUAMG00000024209	CMSS1	100	89.686	Ursus_americanus
ENSNGAG00000020316	Cmss1	93	85.714	ENSUMAG00000001983	CMSS1	100	85.328	Ursus_maritimus
ENSNGAG00000020316	Cmss1	100	64.875	ENSVPAG00000000263	CMSS1	100	64.875	Vicugna_pacos
ENSNGAG00000020316	Cmss1	88	89.024	ENSVVUG00000021647	-	100	89.024	Vulpes_vulpes
ENSNGAG00000020316	Cmss1	85	81.526	ENSVVUG00000007776	-	98	81.526	Vulpes_vulpes
ENSNGAG00000020316	Cmss1	100	55.872	ENSXETG00000011858	cmss1	100	55.160	Xenopus_tropicalis
ENSNGAG00000020316	Cmss1	75	61.058	ENSXCOG00000018724	cmss1	69	61.386	Xiphophorus_couchianus
ENSNGAG00000020316	Cmss1	75	61.058	ENSXMAG00000011243	cmss1	76	61.386	Xiphophorus_maculatus