EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSNGAG00000020706 (Gene tree)
Gene ID: 103750521
Gene Symbol: Smg5
Alias: -
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Nannospalax_galili
Status: putative
Strand: Plus strand
Length: 28390 bases
Position: chrKL199226.1:2396292-2424681
Accession: 103750521
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNGAP00000021565	EST1	PF10374.9	7.3e-24	1	1
ENSNGAP00000021565	EST1_DNA_bind	PF10373.9	3.6e-39	1	2
ENSNGAP00000021565	EST1_DNA_bind	PF10373.9	3.6e-39	2	2
ENSNGAP00000021565	PIN_4	PF13638.6	4.3e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNGAT00000027245	-	4389	XM_008853625	ENSNGAP00000021565	1017 (aa)	XP_008851847	UPI0004ED0EFA

Gene Model

Click here to download ENSNGAG00000020706's gene model file

Pathways

Pathway ID	Pathway Name	Source
ngi03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSNGAG00000020706's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNGAG00000020706	Smg5	100	93.707	ENSG00000198952	SMG5	100	94.002	Homo_sapiens
ENSNGAG00000020706	Smg5	99	66.470	ENSAPOG00000019690	smg5	99	66.634	Acanthochromis_polyacanthus
ENSNGAG00000020706	Smg5	98	90.040	ENSAMEG00000014458	SMG5	100	90.342	Ailuropoda_melanoleuca
ENSNGAG00000020706	Smg5	99	64.779	ENSACIG00000001353	smg5	99	65.833	Amphilophus_citrinellus
ENSNGAG00000020706	Smg5	99	63.715	ENSAOCG00000019483	smg5	98	64.831	Amphiprion_ocellaris
ENSNGAG00000020706	Smg5	99	65.019	ENSAPEG00000022949	smg5	99	65.759	Amphiprion_percula
ENSNGAG00000020706	Smg5	99	64.971	ENSATEG00000005348	smg5	99	67.023	Anabas_testudineus
ENSNGAG00000020706	Smg5	98	78.558	ENSAPLG00000010263	SMG5	100	78.168	Anas_platyrhynchos
ENSNGAG00000020706	Smg5	100	93.019	ENSANAG00000032899	SMG5	100	93.314	Aotus_nancymaae
ENSNGAG00000020706	Smg5	99	64.740	ENSACLG00000009311	smg5	99	65.957	Astatotilapia_calliptera
ENSNGAG00000020706	Smg5	100	92.822	ENSBTAG00000009435	SMG5	100	92.822	Bos_taurus
ENSNGAG00000020706	Smg5	99	43.491	ENSBTAG00000021747	-	99	43.525	Bos_taurus
ENSNGAG00000020706	Smg5	100	93.117	ENSCJAG00000005684	SMG5	100	93.412	Callithrix_jacchus
ENSNGAG00000020706	Smg5	100	91.839	ENSCAFG00000016839	SMG5	100	91.445	Canis_familiaris
ENSNGAG00000020706	Smg5	100	91.839	ENSCAFG00020006061	SMG5	100	91.445	Canis_lupus_dingo
ENSNGAG00000020706	Smg5	100	92.724	ENSCHIG00000007709	SMG5	100	92.724	Capra_hircus
ENSNGAG00000020706	Smg5	99	44.597	ENSCHIG00000006323	-	99	44.324	Capra_hircus
ENSNGAG00000020706	Smg5	100	93.222	ENSTSYG00000004099	SMG5	100	93.517	Carlito_syrichta
ENSNGAG00000020706	Smg5	97	72.211	ENSCAPG00000003631	SMG5	100	73.333	Cavia_aperea
ENSNGAG00000020706	Smg5	100	92.829	ENSCPOG00000015696	SMG5	100	92.927	Cavia_porcellus
ENSNGAG00000020706	Smg5	100	93.019	ENSCCAG00000027409	SMG5	100	93.314	Cebus_capucinus
ENSNGAG00000020706	Smg5	100	93.904	ENSCATG00000030539	SMG5	100	94.199	Cercocebus_atys
ENSNGAG00000020706	Smg5	100	93.910	ENSCLAG00000003983	SMG5	100	94.008	Chinchilla_lanigera
ENSNGAG00000020706	Smg5	100	93.805	ENSCSAG00000002120	SMG5	100	94.100	Chlorocebus_sabaeus
ENSNGAG00000020706	Smg5	54	91.971	ENSCHOG00000008741	-	57	91.971	Choloepus_hoffmanni
ENSNGAG00000020706	Smg5	94	77.079	ENSCPBG00000025848	SMG5	100	78.014	Chrysemys_picta_bellii
ENSNGAG00000020706	Smg5	93	34.607	ENSCING00000008706	-	99	34.327	Ciona_intestinalis
ENSNGAG00000020706	Smg5	100	89.971	ENSCANG00000029208	SMG5	100	90.265	Colobus_angolensis_palliatus
ENSNGAG00000020706	Smg5	100	93.811	ENSCGRG00001006336	Smg5	100	93.615	Cricetulus_griseus_chok1gshd
ENSNGAG00000020706	Smg5	98	93.964	ENSCGRG00000005111	Smg5	100	93.756	Cricetulus_griseus_crigri
ENSNGAG00000020706	Smg5	99	64.545	ENSCSEG00000014220	smg5	99	64.798	Cynoglossus_semilaevis
ENSNGAG00000020706	Smg5	99	60.763	ENSCVAG00000000529	smg5	99	61.426	Cyprinodon_variegatus
ENSNGAG00000020706	Smg5	100	89.381	ENSDNOG00000000051	SMG5	100	89.381	Dasypus_novemcinctus
ENSNGAG00000020706	Smg5	92	35.987	ENSDNOG00000039862	-	100	35.307	Dasypus_novemcinctus
ENSNGAG00000020706	Smg5	100	92.141	ENSDORG00000010382	Smg5	100	92.141	Dipodomys_ordii
ENSNGAG00000020706	Smg5	74	30.526	FBgn0019890	Smg5	65	30.526	Drosophila_melanogaster
ENSNGAG00000020706	Smg5	82	93.204	ENSETEG00000010336	SMG5	91	93.204	Echinops_telfairi
ENSNGAG00000020706	Smg5	90	47.771	ENSEBUG00000003739	smg5	98	47.826	Eptatretus_burgeri
ENSNGAG00000020706	Smg5	100	94.100	ENSEASG00005019122	SMG5	100	94.100	Equus_asinus_asinus
ENSNGAG00000020706	Smg5	100	94.100	ENSECAG00000001389	SMG5	100	94.100	Equus_caballus
ENSNGAG00000020706	Smg5	72	98.271	ENSEEUG00000012690	SMG5	74	98.271	Erinaceus_europaeus
ENSNGAG00000020706	Smg5	99	65.314	ENSELUG00000012585	smg5	99	64.928	Esox_lucius
ENSNGAG00000020706	Smg5	100	91.052	ENSFCAG00000011783	SMG5	100	90.472	Felis_catus
ENSNGAG00000020706	Smg5	58	82.667	ENSFALG00000001166	-	99	82.274	Ficedula_albicollis
ENSNGAG00000020706	Smg5	98	91.239	ENSFDAG00000017388	SMG5	100	91.339	Fukomys_damarensis
ENSNGAG00000020706	Smg5	97	61.794	ENSFHEG00000013939	smg5	95	68.051	Fundulus_heteroclitus
ENSNGAG00000020706	Smg5	99	61.259	ENSGMOG00000007310	smg5	99	61.498	Gadus_morhua
ENSNGAG00000020706	Smg5	99	77.746	ENSGALG00000029918	-	100	77.165	Gallus_gallus
ENSNGAG00000020706	Smg5	84	77.176	ENSGAFG00000021691	smg5	95	67.732	Gambusia_affinis
ENSNGAG00000020706	Smg5	99	61.256	ENSGACG00000013142	smg5	99	62.220	Gasterosteus_aculeatus
ENSNGAG00000020706	Smg5	100	79.032	ENSGAGG00000016131	SMG5	100	78.748	Gopherus_agassizii
ENSNGAG00000020706	Smg5	100	93.412	ENSGGOG00000010932	SMG5	100	93.707	Gorilla_gorilla
ENSNGAG00000020706	Smg5	99	64.875	ENSHBUG00000008654	smg5	99	65.388	Haplochromis_burtoni
ENSNGAG00000020706	Smg5	100	90.668	ENSHGLG00000019152	SMG5	100	90.668	Heterocephalus_glaber_female
ENSNGAG00000020706	Smg5	89	90.670	ENSHGLG00100015948	SMG5	99	90.889	Heterocephalus_glaber_male
ENSNGAG00000020706	Smg5	86	73.350	ENSHCOG00000010229	smg5	92	73.105	Hippocampus_comes
ENSNGAG00000020706	Smg5	99	60.714	ENSIPUG00000006624	Smg5	99	62.283	Ictalurus_punctatus
ENSNGAG00000020706	Smg5	100	93.510	ENSSTOG00000001780	SMG5	100	93.510	Ictidomys_tridecemlineatus
ENSNGAG00000020706	Smg5	100	92.934	ENSJJAG00000022763	Smg5	100	92.934	Jaculus_jaculus
ENSNGAG00000020706	Smg5	50	59.524	ENSKMAG00000014586	smg5	99	61.989	Kryptolebias_marmoratus
ENSNGAG00000020706	Smg5	99	65.188	ENSLBEG00000002145	smg5	99	65.537	Labrus_bergylta
ENSNGAG00000020706	Smg5	100	64.415	ENSLACG00000010521	SMG5	100	64.510	Latimeria_chalumnae
ENSNGAG00000020706	Smg5	96	78.169	ENSLOCG00000008380	smg5	99	61.165	Lepisosteus_oculatus
ENSNGAG00000020706	Smg5	100	91.839	ENSLAFG00000006241	SMG5	100	91.839	Loxodonta_africana
ENSNGAG00000020706	Smg5	100	93.805	ENSMFAG00000045357	SMG5	100	94.100	Macaca_fascicularis
ENSNGAG00000020706	Smg5	100	93.805	ENSMMUG00000000090	SMG5	100	94.100	Macaca_mulatta
ENSNGAG00000020706	Smg5	100	93.707	ENSMNEG00000044425	SMG5	100	94.002	Macaca_nemestrina
ENSNGAG00000020706	Smg5	100	87.659	ENSMLEG00000041192	SMG5	100	87.267	Mandrillus_leucophaeus
ENSNGAG00000020706	Smg5	99	61.918	ENSMAMG00000010683	smg5	100	61.734	Mastacembelus_armatus
ENSNGAG00000020706	Smg5	99	63.002	ENSMZEG00005015815	smg5	99	64.135	Maylandia_zebra
ENSNGAG00000020706	Smg5	63	58.408	ENSMZEG00005016543	smg5	100	58.283	Maylandia_zebra
ENSNGAG00000020706	Smg5	100	92.731	ENSMAUG00000010381	Smg5	100	92.633	Mesocricetus_auratus
ENSNGAG00000020706	Smg5	100	93.314	ENSMICG00000002257	SMG5	100	92.330	Microcebus_murinus
ENSNGAG00000020706	Smg5	100	92.451	ENSMOCG00000016590	Smg5	100	92.255	Microtus_ochrogaster
ENSNGAG00000020706	Smg5	99	59.319	ENSMMOG00000017199	smg5	99	60.163	Mola_mola
ENSNGAG00000020706	Smg5	83	38.537	ENSMODG00000004532	-	84	38.583	Monodelphis_domestica
ENSNGAG00000020706	Smg5	79	39.295	ENSMODG00000010675	-	85	38.903	Monodelphis_domestica
ENSNGAG00000020706	Smg5	78	40.909	ENSMODG00000004735	-	86	40.909	Monodelphis_domestica
ENSNGAG00000020706	Smg5	97	35.074	ENSMODG00000004511	-	99	34.486	Monodelphis_domestica
ENSNGAG00000020706	Smg5	87	89.077	ENSMODG00000016901	SMG5	98	89.077	Monodelphis_domestica
ENSNGAG00000020706	Smg5	99	60.538	ENSMALG00000010375	smg5	99	59.946	Monopterus_albus
ENSNGAG00000020706	Smg5	100	93.026	MGP_CAROLIEiJ_G0025163	Smg5	100	98.883	Mus_caroli
ENSNGAG00000020706	Smg5	100	93.124	ENSMUSG00000001415	Smg5	99	98.883	Mus_musculus
ENSNGAG00000020706	Smg5	100	93.131	MGP_PahariEiJ_G0026606	Smg5	100	98.883	Mus_pahari
ENSNGAG00000020706	Smg5	100	93.222	MGP_SPRETEiJ_G0026104	Smg5	100	98.883	Mus_spretus
ENSNGAG00000020706	Smg5	94	90.116	ENSMPUG00000004546	SMG5	100	89.590	Mustela_putorius_furo
ENSNGAG00000020706	Smg5	100	91.683	ENSMLUG00000008518	SMG5	100	91.585	Myotis_lucifugus
ENSNGAG00000020706	Smg5	96	63.015	ENSNBRG00000004332	smg5	97	64.178	Neolamprologus_brichardi
ENSNGAG00000020706	Smg5	100	93.314	ENSNLEG00000012439	SMG5	100	93.609	Nomascus_leucogenys
ENSNGAG00000020706	Smg5	100	87.021	ENSMEUG00000012834	SMG5	100	87.021	Notamacropus_eugenii
ENSNGAG00000020706	Smg5	100	92.232	ENSOPRG00000009152	SMG5	100	92.232	Ochotona_princeps
ENSNGAG00000020706	Smg5	100	92.724	ENSODEG00000012237	SMG5	100	92.724	Octodon_degus
ENSNGAG00000020706	Smg5	99	60.267	ENSONIG00000008632	smg5	99	61.422	Oreochromis_niloticus
ENSNGAG00000020706	Smg5	89	40.437	ENSOCUG00000023338	-	99	39.803	Oryctolagus_cuniculus
ENSNGAG00000020706	Smg5	98	94.159	ENSOCUG00000012886	SMG5	100	94.159	Oryctolagus_cuniculus
ENSNGAG00000020706	Smg5	99	60.288	ENSORLG00000016239	smg5	99	61.462	Oryzias_latipes
ENSNGAG00000020706	Smg5	99	64.516	ENSORLG00020013127	smg5	99	65.430	Oryzias_latipes_hni
ENSNGAG00000020706	Smg5	99	64.230	ENSORLG00015019014	smg5	99	64.946	Oryzias_latipes_hsok
ENSNGAG00000020706	Smg5	81	59.184	ENSOMEG00000021330	smg5	92	60.518	Oryzias_melastigma
ENSNGAG00000020706	Smg5	100	92.429	ENSOGAG00000004966	SMG5	100	92.724	Otolemur_garnettii
ENSNGAG00000020706	Smg5	99	44.132	ENSOARG00000011963	-	99	44.433	Ovis_aries
ENSNGAG00000020706	Smg5	100	92.822	ENSOARG00000005778	SMG5	100	92.822	Ovis_aries
ENSNGAG00000020706	Smg5	100	93.609	ENSPPAG00000011996	SMG5	100	93.904	Pan_paniscus
ENSNGAG00000020706	Smg5	98	91.339	ENSPPRG00000011901	SMG5	100	90.634	Panthera_pardus
ENSNGAG00000020706	Smg5	96	84.608	ENSPTIG00000007892	SMG5	98	83.690	Panthera_tigris_altaica
ENSNGAG00000020706	Smg5	100	93.609	ENSPTRG00000023925	SMG5	100	93.904	Pan_troglodytes
ENSNGAG00000020706	Smg5	100	93.609	ENSPTRG00000049282	-	100	93.904	Pan_troglodytes
ENSNGAG00000020706	Smg5	100	93.904	ENSPANG00000011201	SMG5	100	94.199	Papio_anubis
ENSNGAG00000020706	Smg5	99	65.986	ENSPKIG00000009402	smg5	99	67.028	Paramormyrops_kingsleyae
ENSNGAG00000020706	Smg5	98	80.060	ENSPSIG00000015198	SMG5	100	79.960	Pelodiscus_sinensis
ENSNGAG00000020706	Smg5	99	60.612	ENSPMGG00000010465	smg5	99	59.797	Periophthalmus_magnuspinnatus
ENSNGAG00000020706	Smg5	57	44.631	ENSPEMG00000010022	-	96	45.017	Peromyscus_maniculatus_bairdii
ENSNGAG00000020706	Smg5	100	92.829	ENSPEMG00000001819	Smg5	100	93.222	Peromyscus_maniculatus_bairdii
ENSNGAG00000020706	Smg5	99	49.228	ENSPMAG00000000410	smg5	100	49.433	Petromyzon_marinus
ENSNGAG00000020706	Smg5	100	88.114	ENSPCIG00000018938	SMG5	100	88.114	Phascolarctos_cinereus
ENSNGAG00000020706	Smg5	99	65.863	ENSPMEG00000014105	smg5	99	66.281	Poecilia_mexicana
ENSNGAG00000020706	Smg5	93	69.535	ENSPREG00000017713	smg5	99	62.826	Poecilia_reticulata
ENSNGAG00000020706	Smg5	100	93.805	ENSPPYG00000000723	SMG5	100	94.100	Pongo_abelii
ENSNGAG00000020706	Smg5	75	93.370	ENSPCAG00000008412	SMG5	81	93.370	Procavia_capensis
ENSNGAG00000020706	Smg5	100	93.707	ENSPCOG00000004741	SMG5	100	93.707	Propithecus_coquereli
ENSNGAG00000020706	Smg5	100	82.596	ENSPVAG00000016748	SMG5	100	83.776	Pteropus_vampyrus
ENSNGAG00000020706	Smg5	99	60.194	ENSPNYG00000013397	smg5	99	61.185	Pundamilia_nyererei
ENSNGAG00000020706	Smg5	99	62.443	ENSPNAG00000028363	smg5	99	61.531	Pygocentrus_nattereri
ENSNGAG00000020706	Smg5	100	93.713	ENSRNOG00000019590	Smg5	100	93.517	Rattus_norvegicus
ENSNGAG00000020706	Smg5	100	93.609	ENSRBIG00000027428	SMG5	100	93.904	Rhinopithecus_bieti
ENSNGAG00000020706	Smg5	100	93.510	ENSRROG00000030035	SMG5	100	93.805	Rhinopithecus_roxellana
ENSNGAG00000020706	Smg5	100	93.215	ENSSBOG00000033339	SMG5	100	93.510	Saimiri_boliviensis_boliviensis
ENSNGAG00000020706	Smg5	98	87.688	ENSSHAG00000014163	SMG5	100	87.688	Sarcophilus_harrisii
ENSNGAG00000020706	Smg5	99	33.173	ENSSHAG00000009572	-	79	43.358	Sarcophilus_harrisii
ENSNGAG00000020706	Smg5	64	40.936	ENSSHAG00000000935	-	81	41.463	Sarcophilus_harrisii
ENSNGAG00000020706	Smg5	78	40.052	ENSSHAG00000000561	-	86	40.420	Sarcophilus_harrisii
ENSNGAG00000020706	Smg5	99	66.797	ENSSFOG00015024175	smg5	99	65.789	Scleropages_formosus
ENSNGAG00000020706	Smg5	99	60.482	ENSSMAG00000013059	smg5	99	62.155	Scophthalmus_maximus
ENSNGAG00000020706	Smg5	99	60.407	ENSSDUG00000007122	smg5	99	61.593	Seriola_dumerili
ENSNGAG00000020706	Smg5	99	60.533	ENSSLDG00000011418	smg5	99	61.901	Seriola_lalandi_dorsalis
ENSNGAG00000020706	Smg5	90	79.521	ENSSARG00000012484	SMG5	100	79.521	Sorex_araneus
ENSNGAG00000020706	Smg5	94	78.036	ENSSPUG00000002260	SMG5	100	77.328	Sphenodon_punctatus
ENSNGAG00000020706	Smg5	91	76.168	ENSSPAG00000014266	smg5	99	65.734	Stegastes_partitus
ENSNGAG00000020706	Smg5	100	94.297	ENSSSCG00000006490	-	100	94.297	Sus_scrofa
ENSNGAG00000020706	Smg5	99	72.539	ENSSSCG00000039308	-	100	72.638	Sus_scrofa
ENSNGAG00000020706	Smg5	99	80.079	ENSTGUG00000003748	-	100	79.512	Taeniopygia_guttata
ENSNGAG00000020706	Smg5	99	64.985	ENSTRUG00000012580	smg5	99	64.791	Takifugu_rubripes
ENSNGAG00000020706	Smg5	99	64.791	ENSTNIG00000010303	smg5	99	64.175	Tetraodon_nigroviridis
ENSNGAG00000020706	Smg5	60	100.000	ENSTBEG00000002777	SMG5	60	100.000	Tupaia_belangeri
ENSNGAG00000020706	Smg5	100	88.201	ENSTTRG00000001401	SMG5	100	87.807	Tursiops_truncatus
ENSNGAG00000020706	Smg5	100	91.052	ENSUAMG00000013721	SMG5	100	90.265	Ursus_americanus
ENSNGAG00000020706	Smg5	98	86.647	ENSUMAG00000018041	SMG5	97	86.245	Ursus_maritimus
ENSNGAG00000020706	Smg5	98	83.669	ENSVPAG00000009446	SMG5	99	83.266	Vicugna_pacos
ENSNGAG00000020706	Smg5	100	91.839	ENSVVUG00000005887	SMG5	100	91.347	Vulpes_vulpes
ENSNGAG00000020706	Smg5	77	64.861	ENSXETG00000033791	SMG5	99	64.484	Xenopus_tropicalis
ENSNGAG00000020706	Smg5	75	75.342	ENSXCOG00000004379	smg5	94	69.780	Xiphophorus_couchianus
ENSNGAG00000020706	Smg5	93	75.114	ENSXMAG00000013499	smg5	99	66.084	Xiphophorus_maculatus