EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSNGAG00000021637 (Gene tree)
Gene ID: 103737293
Gene Symbol: Lsm7
Alias: 0910001B06Rik|1110033F18Rik
Full Name: LSM7 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Nannospalax_galili
Status: putative
Strand: Plus strand
Length: 3587 bases
Position: chrKL201457.1:2665788-2669374
Accession: 103737293
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNGAP00000022921	LSM	PF01423.22	8.9e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNGAT00000028610	-	687	XM_008837102	ENSNGAP00000022921	103 (aa)	XP_008835324	UPI0004ED6512

Gene Model

Click here to download ENSNGAG00000021637's gene model file

Pathways

Pathway ID	Pathway Name	Source
ngi03018	RNA degradation	KEGG
ngi03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSNGAG00000021637's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSNGAG00000021637	Lsm7	72	35.526	ENSNGAG00000016554	Lsm8	73	35.526
ENSNGAG00000021637	Lsm7	69	36.620	ENSNGAG00000020309	-	83	36.620

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNGAG00000021637	Lsm7	100	98.058	ENSG00000130332	LSM7	100	98.058	Homo_sapiens
ENSNGAG00000021637	Lsm7	91	94.681	ENSAPOG00000015573	lsm7	81	94.681	Acanthochromis_polyacanthus
ENSNGAG00000021637	Lsm7	100	95.146	ENSAMEG00000005484	LSM7	100	95.146	Ailuropoda_melanoleuca
ENSNGAG00000021637	Lsm7	95	92.857	ENSACIG00000006498	lsm7	78	92.857	Amphilophus_citrinellus
ENSNGAG00000021637	Lsm7	98	93.069	ENSAOCG00000001077	lsm7	92	93.069	Amphiprion_ocellaris
ENSNGAG00000021637	Lsm7	100	93.204	ENSAPEG00000000694	lsm7	100	93.204	Amphiprion_percula
ENSNGAG00000021637	Lsm7	100	91.262	ENSAPEG00000024447	lsm7	92	93.069	Amphiprion_percula
ENSNGAG00000021637	Lsm7	100	93.204	ENSATEG00000008557	lsm7	100	93.204	Anabas_testudineus
ENSNGAG00000021637	Lsm7	100	90.291	ENSANAG00000022222	-	100	90.291	Aotus_nancymaae
ENSNGAG00000021637	Lsm7	100	98.058	ENSANAG00000037196	-	100	98.058	Aotus_nancymaae
ENSNGAG00000021637	Lsm7	100	92.233	ENSACLG00000021021	lsm7	100	92.233	Astatotilapia_calliptera
ENSNGAG00000021637	Lsm7	100	93.204	ENSAMXG00000037622	lsm7	100	93.204	Astyanax_mexicanus
ENSNGAG00000021637	Lsm7	100	98.058	ENSBTAG00000004521	LSM7	100	98.058	Bos_taurus
ENSNGAG00000021637	Lsm7	97	56.000	WBGene00003081	lsm-7	96	56.000	Caenorhabditis_elegans
ENSNGAG00000021637	Lsm7	54	98.214	ENSCJAG00000039713	-	68	98.214	Callithrix_jacchus
ENSNGAG00000021637	Lsm7	98	97.030	ENSCAFG00000019409	LSM7	98	97.030	Canis_familiaris
ENSNGAG00000021637	Lsm7	98	97.030	ENSCAFG00020018168	LSM7	74	97.030	Canis_lupus_dingo
ENSNGAG00000021637	Lsm7	100	96.117	ENSCHIG00000023663	LSM7	100	96.117	Capra_hircus
ENSNGAG00000021637	Lsm7	69	97.183	ENSCAPG00000014534	LSM7	100	97.183	Cavia_aperea
ENSNGAG00000021637	Lsm7	100	98.058	ENSCPOG00000014025	LSM7	100	98.058	Cavia_porcellus
ENSNGAG00000021637	Lsm7	98	98.020	ENSCCAG00000035456	LSM7	99	98.020	Cebus_capucinus
ENSNGAG00000021637	Lsm7	100	98.058	ENSCATG00000023543	LSM7	100	98.058	Cercocebus_atys
ENSNGAG00000021637	Lsm7	100	98.058	ENSCLAG00000011635	LSM7	100	98.058	Chinchilla_lanigera
ENSNGAG00000021637	Lsm7	100	98.058	ENSCSAG00000011599	LSM7	100	98.058	Chlorocebus_sabaeus
ENSNGAG00000021637	Lsm7	70	91.667	ENSCPBG00000021317	LSM7	77	91.667	Chrysemys_picta_bellii
ENSNGAG00000021637	Lsm7	93	81.250	ENSCING00000022134	-	97	81.250	Ciona_intestinalis
ENSNGAG00000021637	Lsm7	100	98.058	ENSCANG00000035525	LSM7	100	98.058	Colobus_angolensis_palliatus
ENSNGAG00000021637	Lsm7	100	99.029	ENSCGRG00001000807	-	100	99.029	Cricetulus_griseus_chok1gshd
ENSNGAG00000021637	Lsm7	87	87.778	ENSCGRG00001016005	-	92	87.778	Cricetulus_griseus_chok1gshd
ENSNGAG00000021637	Lsm7	87	87.778	ENSCGRG00000006821	-	92	87.778	Cricetulus_griseus_crigri
ENSNGAG00000021637	Lsm7	98	99.010	ENSCGRG00000014355	-	97	99.010	Cricetulus_griseus_crigri
ENSNGAG00000021637	Lsm7	98	93.069	ENSCSEG00000014900	lsm7	86	93.069	Cynoglossus_semilaevis
ENSNGAG00000021637	Lsm7	98	94.059	ENSCVAG00000021091	lsm7	94	94.059	Cyprinodon_variegatus
ENSNGAG00000021637	Lsm7	100	93.204	ENSDARG00000058328	lsm7	100	93.204	Danio_rerio
ENSNGAG00000021637	Lsm7	99	96.078	ENSDORG00000024460	Lsm7	100	96.078	Dipodomys_ordii
ENSNGAG00000021637	Lsm7	94	74.490	FBgn0261068	LSm7	89	74.490	Drosophila_melanogaster
ENSNGAG00000021637	Lsm7	98	95.050	ENSETEG00000012788	LSM7	99	95.050	Echinops_telfairi
ENSNGAG00000021637	Lsm7	100	84.466	ENSEBUG00000016992	lsm7	99	84.466	Eptatretus_burgeri
ENSNGAG00000021637	Lsm7	81	59.036	ENSEBUG00000010470	-	79	59.036	Eptatretus_burgeri
ENSNGAG00000021637	Lsm7	100	96.117	ENSECAG00000001440	LSM7	66	96.117	Equus_caballus
ENSNGAG00000021637	Lsm7	100	97.087	ENSFCAG00000003445	LSM7	100	97.087	Felis_catus
ENSNGAG00000021637	Lsm7	98	95.050	ENSFALG00000011912	LSM7	100	95.050	Ficedula_albicollis
ENSNGAG00000021637	Lsm7	93	97.917	ENSFDAG00000007661	LSM7	100	97.917	Fukomys_damarensis
ENSNGAG00000021637	Lsm7	89	93.478	ENSFHEG00000006349	lsm7	90	94.059	Fundulus_heteroclitus
ENSNGAG00000021637	Lsm7	100	91.262	ENSGMOG00000013320	lsm7	100	91.262	Gadus_morhua
ENSNGAG00000021637	Lsm7	100	94.175	ENSGAFG00000013902	lsm7	100	94.175	Gambusia_affinis
ENSNGAG00000021637	Lsm7	100	92.233	ENSGACG00000010390	lsm7	100	92.233	Gasterosteus_aculeatus
ENSNGAG00000021637	Lsm7	100	98.058	ENSGGOG00000010172	LSM7	100	98.058	Gorilla_gorilla
ENSNGAG00000021637	Lsm7	100	92.233	ENSHBUG00000004616	lsm7	100	92.233	Haplochromis_burtoni
ENSNGAG00000021637	Lsm7	100	98.058	ENSHGLG00000010587	LSM7	100	98.058	Heterocephalus_glaber_female
ENSNGAG00000021637	Lsm7	100	98.058	ENSHGLG00100000852	LSM7	100	98.058	Heterocephalus_glaber_male
ENSNGAG00000021637	Lsm7	98	92.079	ENSHCOG00000020252	lsm7	100	92.079	Hippocampus_comes
ENSNGAG00000021637	Lsm7	100	95.146	ENSIPUG00000024724	lsm7	100	95.146	Ictalurus_punctatus
ENSNGAG00000021637	Lsm7	98	98.020	ENSSTOG00000028372	LSM7	99	98.020	Ictidomys_tridecemlineatus
ENSNGAG00000021637	Lsm7	98	98.020	ENSJJAG00000001936	Lsm7	98	98.020	Jaculus_jaculus
ENSNGAG00000021637	Lsm7	100	94.175	ENSKMAG00000022151	lsm7	100	94.175	Kryptolebias_marmoratus
ENSNGAG00000021637	Lsm7	100	92.233	ENSLBEG00000005203	lsm7	100	92.233	Labrus_bergylta
ENSNGAG00000021637	Lsm7	100	95.146	ENSLACG00000015700	LSM7	100	95.146	Latimeria_chalumnae
ENSNGAG00000021637	Lsm7	100	94.175	ENSLOCG00000004356	lsm7	100	94.175	Lepisosteus_oculatus
ENSNGAG00000021637	Lsm7	98	98.020	ENSLAFG00000029302	LSM7	98	98.020	Loxodonta_africana
ENSNGAG00000021637	Lsm7	100	98.058	ENSMFAG00000044572	LSM7	100	98.058	Macaca_fascicularis
ENSNGAG00000021637	Lsm7	100	98.058	ENSMMUG00000000452	LSM7	100	98.058	Macaca_mulatta
ENSNGAG00000021637	Lsm7	100	98.058	ENSMNEG00000004393	LSM7	100	98.058	Macaca_nemestrina
ENSNGAG00000021637	Lsm7	100	98.058	ENSMLEG00000030852	LSM7	100	98.058	Mandrillus_leucophaeus
ENSNGAG00000021637	Lsm7	100	92.233	ENSMAMG00000005410	lsm7	100	92.233	Mastacembelus_armatus
ENSNGAG00000021637	Lsm7	100	92.233	ENSMZEG00005028055	lsm7	100	92.233	Maylandia_zebra
ENSNGAG00000021637	Lsm7	100	96.117	ENSMGAG00000000750	LSM7	89	96.117	Meleagris_gallopavo
ENSNGAG00000021637	Lsm7	100	99.029	ENSMAUG00000009276	Lsm7	100	99.029	Mesocricetus_auratus
ENSNGAG00000021637	Lsm7	100	98.058	ENSMICG00000028619	-	100	98.058	Microcebus_murinus
ENSNGAG00000021637	Lsm7	100	97.087	ENSMICG00000009988	-	100	97.087	Microcebus_murinus
ENSNGAG00000021637	Lsm7	100	99.029	ENSMOCG00000016925	Lsm7	100	99.029	Microtus_ochrogaster
ENSNGAG00000021637	Lsm7	100	93.204	ENSMMOG00000019645	lsm7	98	93.204	Mola_mola
ENSNGAG00000021637	Lsm7	100	97.087	ENSMODG00000004722	LSM7	100	97.087	Monodelphis_domestica
ENSNGAG00000021637	Lsm7	100	92.233	ENSMALG00000014511	lsm7	79	92.233	Monopterus_albus
ENSNGAG00000021637	Lsm7	100	97.087	MGP_CAROLIEiJ_G0015607	Lsm7	100	97.087	Mus_caroli
ENSNGAG00000021637	Lsm7	100	97.087	ENSMUSG00000035215	Lsm7	100	97.087	Mus_musculus
ENSNGAG00000021637	Lsm7	100	97.087	MGP_PahariEiJ_G0031020	Lsm7	100	97.087	Mus_pahari
ENSNGAG00000021637	Lsm7	100	97.087	MGP_SPRETEiJ_G0016425	Lsm7	100	97.087	Mus_spretus
ENSNGAG00000021637	Lsm7	100	90.291	ENSMLUG00000024002	-	94	90.291	Myotis_lucifugus
ENSNGAG00000021637	Lsm7	100	95.146	ENSMLUG00000013097	-	100	95.146	Myotis_lucifugus
ENSNGAG00000021637	Lsm7	91	92.553	ENSNBRG00000001237	-	82	90.291	Neolamprologus_brichardi
ENSNGAG00000021637	Lsm7	98	92.079	ENSNBRG00000015770	lsm7	87	92.079	Neolamprologus_brichardi
ENSNGAG00000021637	Lsm7	100	98.058	ENSNLEG00000002265	LSM7	100	98.058	Nomascus_leucogenys
ENSNGAG00000021637	Lsm7	100	77.670	ENSODEG00000008190	-	100	77.670	Octodon_degus
ENSNGAG00000021637	Lsm7	100	98.058	ENSODEG00000013590	-	100	98.058	Octodon_degus
ENSNGAG00000021637	Lsm7	100	91.262	ENSODEG00000018769	-	100	91.262	Octodon_degus
ENSNGAG00000021637	Lsm7	100	92.233	ENSONIG00000001801	lsm7	89	92.233	Oreochromis_niloticus
ENSNGAG00000021637	Lsm7	100	93.204	ENSORLG00000023951	lsm7	100	93.204	Oryzias_latipes
ENSNGAG00000021637	Lsm7	100	93.204	ENSORLG00020022226	lsm7	100	93.204	Oryzias_latipes_hni
ENSNGAG00000021637	Lsm7	100	91.262	ENSORLG00015020044	lsm7	94	93.069	Oryzias_latipes_hsok
ENSNGAG00000021637	Lsm7	100	93.204	ENSOMEG00000012806	lsm7	100	93.204	Oryzias_melastigma
ENSNGAG00000021637	Lsm7	98	98.020	ENSOGAG00000000144	-	99	98.020	Otolemur_garnettii
ENSNGAG00000021637	Lsm7	100	88.350	ENSOGAG00000024373	-	100	88.350	Otolemur_garnettii
ENSNGAG00000021637	Lsm7	100	96.117	ENSOARG00000014013	LSM7	100	96.117	Ovis_aries
ENSNGAG00000021637	Lsm7	100	98.058	ENSPPAG00000026500	LSM7	100	98.058	Pan_paniscus
ENSNGAG00000021637	Lsm7	100	97.087	ENSPPRG00000008624	LSM7	100	97.087	Panthera_pardus
ENSNGAG00000021637	Lsm7	98	97.030	ENSPTIG00000016252	LSM7	98	97.030	Panthera_tigris_altaica
ENSNGAG00000021637	Lsm7	100	98.058	ENSPTRG00000010233	LSM7	100	98.058	Pan_troglodytes
ENSNGAG00000021637	Lsm7	100	98.058	ENSPANG00000020668	LSM7	100	98.058	Papio_anubis
ENSNGAG00000021637	Lsm7	100	95.146	ENSPKIG00000011325	lsm7	100	95.146	Paramormyrops_kingsleyae
ENSNGAG00000021637	Lsm7	98	96.040	ENSPSIG00000017149	LSM7	89	96.040	Pelodiscus_sinensis
ENSNGAG00000021637	Lsm7	100	93.204	ENSPMGG00000006498	lsm7	100	93.204	Periophthalmus_magnuspinnatus
ENSNGAG00000021637	Lsm7	100	97.087	ENSPCIG00000030454	LSM7	100	97.087	Phascolarctos_cinereus
ENSNGAG00000021637	Lsm7	100	91.262	ENSPFOG00000012467	lsm7	91	91.262	Poecilia_formosa
ENSNGAG00000021637	Lsm7	100	91.262	ENSPLAG00000000252	lsm7	94	92.157	Poecilia_latipinna
ENSNGAG00000021637	Lsm7	100	91.262	ENSPMEG00000000587	lsm7	94	92.157	Poecilia_mexicana
ENSNGAG00000021637	Lsm7	78	75.309	ENSPREG00000016718	lsm7	65	75.309	Poecilia_reticulata
ENSNGAG00000021637	Lsm7	71	94.521	ENSPPYG00000009348	-	50	94.521	Pongo_abelii
ENSNGAG00000021637	Lsm7	100	98.058	ENSPCOG00000017177	LSM7	100	98.058	Propithecus_coquereli
ENSNGAG00000021637	Lsm7	100	92.233	ENSPNYG00000006938	lsm7	100	92.233	Pundamilia_nyererei
ENSNGAG00000021637	Lsm7	100	93.204	ENSPNAG00000010141	lsm7	100	93.204	Pygocentrus_nattereri
ENSNGAG00000021637	Lsm7	100	98.058	ENSRNOG00000019552	Lsm7	100	98.058	Rattus_norvegicus
ENSNGAG00000021637	Lsm7	100	98.058	ENSRBIG00000035978	LSM7	100	98.058	Rhinopithecus_bieti
ENSNGAG00000021637	Lsm7	100	98.058	ENSRROG00000034044	LSM7	100	98.058	Rhinopithecus_roxellana
ENSNGAG00000021637	Lsm7	86	46.739	YNL147W	-	80	46.739	Saccharomyces_cerevisiae
ENSNGAG00000021637	Lsm7	100	98.058	ENSSBOG00000034899	LSM7	100	98.058	Saimiri_boliviensis_boliviensis
ENSNGAG00000021637	Lsm7	100	93.204	ENSSFOG00015006728	lsm7	100	93.204	Scleropages_formosus
ENSNGAG00000021637	Lsm7	100	91.262	ENSSMAG00000004195	lsm7	93	93.069	Scophthalmus_maximus
ENSNGAG00000021637	Lsm7	100	93.204	ENSSDUG00000001863	lsm7	100	93.204	Seriola_dumerili
ENSNGAG00000021637	Lsm7	100	93.204	ENSSLDG00000016339	lsm7	100	93.204	Seriola_lalandi_dorsalis
ENSNGAG00000021637	Lsm7	100	93.204	ENSSPAG00000015221	lsm7	100	93.204	Stegastes_partitus
ENSNGAG00000021637	Lsm7	98	98.020	ENSSSCG00000013463	LSM7	99	98.020	Sus_scrofa
ENSNGAG00000021637	Lsm7	98	95.050	ENSTGUG00000000067	LSM7	100	95.050	Taeniopygia_guttata
ENSNGAG00000021637	Lsm7	100	93.204	ENSTRUG00000022913	lsm7	100	93.204	Takifugu_rubripes
ENSNGAG00000021637	Lsm7	100	93.204	ENSTNIG00000015525	lsm7	100	93.204	Tetraodon_nigroviridis
ENSNGAG00000021637	Lsm7	68	85.714	ENSTBEG00000016602	LSM7	100	85.714	Tupaia_belangeri
ENSNGAG00000021637	Lsm7	100	95.146	ENSUAMG00000000912	LSM7	86	95.146	Ursus_americanus
ENSNGAG00000021637	Lsm7	98	97.030	ENSUMAG00000006556	LSM7	79	97.030	Ursus_maritimus
ENSNGAG00000021637	Lsm7	69	95.775	ENSVVUG00000002640	LSM7	65	95.775	Vulpes_vulpes
ENSNGAG00000021637	Lsm7	98	95.050	ENSXETG00000022166	lsm7	100	95.050	Xenopus_tropicalis
ENSNGAG00000021637	Lsm7	99	93.137	ENSXCOG00000002572	lsm7	100	93.137	Xiphophorus_couchianus
ENSNGAG00000021637	Lsm7	100	94.175	ENSXMAG00000018630	lsm7	100	94.175	Xiphophorus_maculatus