EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSNGAG00000022460 (Gene tree)
Gene ID: 103735250
Gene Symbol: Cpsf1
Alias: -
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Nannospalax_galili
Status: putative
Strand: Plus strand
Length: 11057 bases
Position: chrKL201069.1:526301-537357
Accession: 103735250
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNGAP00000024116	CPSF_A	PF03178.15	2.7e-92	1	1
ENSNGAP00000024115	CPSF_A	PF03178.15	2.7e-92	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNGAT00000029821	-	4329	-	ENSNGAP00000024116	1442 (aa)	-	-
ENSNGAT00000029820	-	4538	XM_008834425	ENSNGAP00000024115	1441 (aa)	XP_008832647	UPI0004ED2EFF

Gene Model

Click here to download ENSNGAG00000022460's gene model file

Pathways

Pathway ID	Pathway Name	Source
ngi03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSNGAG00000022460's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNGAG00000022460	Cpsf1	100	96.258	ENSG00000071894	CPSF1	100	96.258	Homo_sapiens
ENSNGAG00000022460	Cpsf1	100	77.838	ENSAPOG00000019621	cpsf1	100	78.041	Acanthochromis_polyacanthus
ENSNGAG00000022460	Cpsf1	97	94.639	ENSAMEG00000005557	CPSF1	100	94.639	Ailuropoda_melanoleuca
ENSNGAG00000022460	Cpsf1	100	78.186	ENSACIG00000006112	cpsf1	100	78.601	Amphilophus_citrinellus
ENSNGAG00000022460	Cpsf1	100	79.201	ENSAOCG00000007120	cpsf1	100	79.339	Amphiprion_ocellaris
ENSNGAG00000022460	Cpsf1	100	79.600	ENSAPEG00000005755	cpsf1	100	79.738	Amphiprion_percula
ENSNGAG00000022460	Cpsf1	100	77.800	ENSATEG00000011097	cpsf1	100	78.205	Anabas_testudineus
ENSNGAG00000022460	Cpsf1	93	81.832	ENSACAG00000009655	CPSF1	100	81.832	Anolis_carolinensis
ENSNGAG00000022460	Cpsf1	100	96.394	ENSANAG00000036514	CPSF1	100	96.394	Aotus_nancymaae
ENSNGAG00000022460	Cpsf1	100	77.493	ENSACLG00000012231	cpsf1	99	79.014	Astatotilapia_calliptera
ENSNGAG00000022460	Cpsf1	100	73.877	ENSAMXG00000008485	cpsf1	100	73.946	Astyanax_mexicanus
ENSNGAG00000022460	Cpsf1	100	94.146	ENSBTAG00000008355	CPSF1	100	94.452	Bos_taurus
ENSNGAG00000022460	Cpsf1	100	32.479	WBGene00022301	cpsf-1	99	40.113	Caenorhabditis_elegans
ENSNGAG00000022460	Cpsf1	100	96.394	ENSCJAG00000021421	CPSF1	100	96.394	Callithrix_jacchus
ENSNGAG00000022460	Cpsf1	97	95.780	ENSCAFG00000001600	CPSF1	100	95.845	Canis_familiaris
ENSNGAG00000022460	Cpsf1	100	95.914	ENSCAFG00020020821	CPSF1	100	95.914	Canis_lupus_dingo
ENSNGAG00000022460	Cpsf1	100	90.361	ENSCHIG00000015833	CPSF1	100	90.361	Capra_hircus
ENSNGAG00000022460	Cpsf1	100	96.741	ENSTSYG00000028560	CPSF1	100	96.741	Carlito_syrichta
ENSNGAG00000022460	Cpsf1	97	95.624	ENSCAPG00000014921	CPSF1	99	95.624	Cavia_aperea
ENSNGAG00000022460	Cpsf1	100	95.215	ENSCPOG00000011448	CPSF1	100	95.215	Cavia_porcellus
ENSNGAG00000022460	Cpsf1	100	96.463	ENSCCAG00000037658	CPSF1	100	96.463	Cebus_capucinus
ENSNGAG00000022460	Cpsf1	100	96.186	ENSCATG00000037234	CPSF1	99	97.612	Cercocebus_atys
ENSNGAG00000022460	Cpsf1	100	97.085	ENSCLAG00000012166	CPSF1	100	97.085	Chinchilla_lanigera
ENSNGAG00000022460	Cpsf1	100	96.255	ENSCSAG00000008502	CPSF1	100	96.255	Chlorocebus_sabaeus
ENSNGAG00000022460	Cpsf1	99	88.095	ENSCPBG00000018910	CPSF1	96	88.095	Chrysemys_picta_bellii
ENSNGAG00000022460	Cpsf1	96	48.852	ENSCING00000000514	-	100	48.780	Ciona_intestinalis
ENSNGAG00000022460	Cpsf1	99	48.454	ENSCSAVG00000002293	-	98	49.765	Ciona_savignyi
ENSNGAG00000022460	Cpsf1	99	90.833	ENSCANG00000032760	CPSF1	99	90.833	Colobus_angolensis_palliatus
ENSNGAG00000022460	Cpsf1	100	97.918	ENSCGRG00001016344	Cpsf1	100	97.918	Cricetulus_griseus_chok1gshd
ENSNGAG00000022460	Cpsf1	100	95.489	ENSCGRG00000003118	Cpsf1	100	95.489	Cricetulus_griseus_crigri
ENSNGAG00000022460	Cpsf1	100	77.632	ENSCSEG00000013464	cpsf1	100	77.839	Cynoglossus_semilaevis
ENSNGAG00000022460	Cpsf1	85	76.869	ENSCVAG00000014059	cpsf1	100	75.926	Cyprinodon_variegatus
ENSNGAG00000022460	Cpsf1	100	79.394	ENSDARG00000034178	cpsf1	100	79.600	Danio_rerio
ENSNGAG00000022460	Cpsf1	68	96.812	ENSDNOG00000043654	CPSF1	94	96.812	Dasypus_novemcinctus
ENSNGAG00000022460	Cpsf1	97	96.557	ENSDORG00000006278	Cpsf1	99	96.557	Dipodomys_ordii
ENSNGAG00000022460	Cpsf1	100	45.357	FBgn0024698	Cpsf160	100	45.314	Drosophila_melanogaster
ENSNGAG00000022460	Cpsf1	80	97.987	ENSETEG00000006022	CPSF1	83	97.987	Echinops_telfairi
ENSNGAG00000022460	Cpsf1	100	96.676	ENSEASG00005010774	CPSF1	100	96.676	Equus_asinus_asinus
ENSNGAG00000022460	Cpsf1	100	96.676	ENSECAG00000022209	CPSF1	100	96.676	Equus_caballus
ENSNGAG00000022460	Cpsf1	100	94.879	ENSEEUG00000000471	CPSF1	100	94.879	Erinaceus_europaeus
ENSNGAG00000022460	Cpsf1	100	77.999	ENSELUG00000012271	cpsf1	100	78.478	Esox_lucius
ENSNGAG00000022460	Cpsf1	100	96.808	ENSFDAG00000016060	CPSF1	100	96.808	Fukomys_damarensis
ENSNGAG00000022460	Cpsf1	100	76.981	ENSFHEG00000016801	cpsf1	100	77.119	Fundulus_heteroclitus
ENSNGAG00000022460	Cpsf1	100	77.961	ENSGMOG00000000796	cpsf1	100	78.168	Gadus_morhua
ENSNGAG00000022460	Cpsf1	95	85.714	ENSGAFG00000018890	cpsf1	100	85.714	Gambusia_affinis
ENSNGAG00000022460	Cpsf1	100	78.621	ENSGACG00000008703	cpsf1	100	78.611	Gasterosteus_aculeatus
ENSNGAG00000022460	Cpsf1	100	84.429	ENSGAGG00000004276	CPSF1	98	88.161	Gopherus_agassizii
ENSNGAG00000022460	Cpsf1	100	96.322	ENSGGOG00000016185	CPSF1	100	96.322	Gorilla_gorilla
ENSNGAG00000022460	Cpsf1	100	79.640	ENSHBUG00000018900	cpsf1	100	79.778	Haplochromis_burtoni
ENSNGAG00000022460	Cpsf1	100	96.947	ENSHGLG00000016139	CPSF1	100	96.947	Heterocephalus_glaber_female
ENSNGAG00000022460	Cpsf1	100	96.877	ENSHGLG00100009750	CPSF1	100	96.877	Heterocephalus_glaber_male
ENSNGAG00000022460	Cpsf1	100	77.001	ENSHCOG00000018509	cpsf1	100	76.918	Hippocampus_comes
ENSNGAG00000022460	Cpsf1	100	76.616	ENSIPUG00000011259	cpsf1	100	76.616	Ictalurus_punctatus
ENSNGAG00000022460	Cpsf1	97	96.426	ENSSTOG00000009957	CPSF1	99	96.426	Ictidomys_tridecemlineatus
ENSNGAG00000022460	Cpsf1	100	98.196	ENSJJAG00000023002	Cpsf1	100	98.196	Jaculus_jaculus
ENSNGAG00000022460	Cpsf1	91	85.893	ENSKMAG00000001940	cpsf1	99	85.893	Kryptolebias_marmoratus
ENSNGAG00000022460	Cpsf1	100	77.301	ENSLBEG00000003601	cpsf1	100	77.710	Labrus_bergylta
ENSNGAG00000022460	Cpsf1	88	81.851	ENSLACG00000000233	CPSF1	91	81.611	Latimeria_chalumnae
ENSNGAG00000022460	Cpsf1	100	78.522	ENSLOCG00000008484	cpsf1	100	78.729	Lepisosteus_oculatus
ENSNGAG00000022460	Cpsf1	97	94.846	ENSLAFG00000022601	CPSF1	100	94.846	Loxodonta_africana
ENSNGAG00000022460	Cpsf1	100	96.186	ENSMFAG00000037013	CPSF1	99	97.313	Macaca_fascicularis
ENSNGAG00000022460	Cpsf1	100	96.255	ENSMMUG00000007380	CPSF1	100	96.255	Macaca_mulatta
ENSNGAG00000022460	Cpsf1	97	96.270	ENSMNEG00000043564	CPSF1	100	96.270	Macaca_nemestrina
ENSNGAG00000022460	Cpsf1	100	96.186	ENSMLEG00000043010	CPSF1	99	97.313	Mandrillus_leucophaeus
ENSNGAG00000022460	Cpsf1	100	78.296	ENSMAMG00000003803	cpsf1	100	78.499	Mastacembelus_armatus
ENSNGAG00000022460	Cpsf1	100	77.493	ENSMZEG00005001168	cpsf1	100	77.632	Maylandia_zebra
ENSNGAG00000022460	Cpsf1	100	97.779	ENSMAUG00000003601	Cpsf1	100	97.779	Mesocricetus_auratus
ENSNGAG00000022460	Cpsf1	100	96.808	ENSMICG00000015767	CPSF1	100	96.808	Microcebus_murinus
ENSNGAG00000022460	Cpsf1	100	97.918	ENSMOCG00000022758	Cpsf1	100	97.918	Microtus_ochrogaster
ENSNGAG00000022460	Cpsf1	100	79.100	ENSMMOG00000021245	cpsf1	100	79.239	Mola_mola
ENSNGAG00000022460	Cpsf1	100	92.961	ENSMODG00000010755	CPSF1	100	92.961	Monodelphis_domestica
ENSNGAG00000022460	Cpsf1	100	77.454	ENSMALG00000020545	cpsf1	100	77.657	Monopterus_albus
ENSNGAG00000022460	Cpsf1	100	98.057	MGP_CAROLIEiJ_G0019936	Cpsf1	100	98.057	Mus_caroli
ENSNGAG00000022460	Cpsf1	100	97.918	ENSMUSG00000034022	Cpsf1	100	97.918	Mus_musculus
ENSNGAG00000022460	Cpsf1	100	98.057	MGP_PahariEiJ_G0019946	Cpsf1	100	98.057	Mus_pahari
ENSNGAG00000022460	Cpsf1	100	97.988	MGP_SPRETEiJ_G0020839	Cpsf1	100	97.988	Mus_spretus
ENSNGAG00000022460	Cpsf1	94	95.775	ENSMPUG00000006419	CPSF1	93	95.775	Mustela_putorius_furo
ENSNGAG00000022460	Cpsf1	100	74.879	ENSNBRG00000000813	cpsf1	100	74.879	Neolamprologus_brichardi
ENSNGAG00000022460	Cpsf1	86	85.025	ENSNLEG00000010633	-	100	88.426	Nomascus_leucogenys
ENSNGAG00000022460	Cpsf1	82	97.674	ENSMEUG00000014922	CPSF1	85	97.674	Notamacropus_eugenii
ENSNGAG00000022460	Cpsf1	61	96.939	ENSOPRG00000004693	-	71	96.939	Ochotona_princeps
ENSNGAG00000022460	Cpsf1	100	97.085	ENSODEG00000013995	CPSF1	100	97.085	Octodon_degus
ENSNGAG00000022460	Cpsf1	100	79.986	ENSONIG00000007676	cpsf1	100	80.125	Oreochromis_niloticus
ENSNGAG00000022460	Cpsf1	58	92.143	ENSOANG00000010716	CPSF1	88	92.143	Ornithorhynchus_anatinus
ENSNGAG00000022460	Cpsf1	100	77.702	ENSORLG00000013544	cpsf1	92	86.831	Oryzias_latipes
ENSNGAG00000022460	Cpsf1	100	77.838	ENSORLG00020021693	cpsf1	92	86.831	Oryzias_latipes_hni
ENSNGAG00000022460	Cpsf1	100	77.687	ENSORLG00015009979	cpsf1	100	77.619	Oryzias_latipes_hsok
ENSNGAG00000022460	Cpsf1	100	77.657	ENSOMEG00000011849	cpsf1	100	77.929	Oryzias_melastigma
ENSNGAG00000022460	Cpsf1	100	96.602	ENSOGAG00000000315	CPSF1	100	96.602	Otolemur_garnettii
ENSNGAG00000022460	Cpsf1	100	96.325	ENSPPAG00000019280	CPSF1	100	96.325	Pan_paniscus
ENSNGAG00000022460	Cpsf1	100	96.325	ENSPTRG00000049288	-	100	96.325	Pan_troglodytes
ENSNGAG00000022460	Cpsf1	100	94.683	ENSPTRG00000051253	-	100	94.683	Pan_troglodytes
ENSNGAG00000022460	Cpsf1	97	96.126	ENSPANG00000015005	CPSF1	100	96.126	Papio_anubis
ENSNGAG00000022460	Cpsf1	100	80.415	ENSPKIG00000002582	cpsf1	100	80.880	Paramormyrops_kingsleyae
ENSNGAG00000022460	Cpsf1	100	92.892	ENSPCIG00000009035	CPSF1	100	92.892	Phascolarctos_cinereus
ENSNGAG00000022460	Cpsf1	100	76.439	ENSPFOG00000012870	cpsf1	100	76.642	Poecilia_formosa
ENSNGAG00000022460	Cpsf1	100	76.081	ENSPREG00000016307	cpsf1	100	76.284	Poecilia_reticulata
ENSNGAG00000022460	Cpsf1	100	88.350	ENSPPYG00000018973	CPSF1	100	88.350	Pongo_abelii
ENSNGAG00000022460	Cpsf1	91	95.170	ENSPCAG00000011541	CPSF1	94	95.170	Procavia_capensis
ENSNGAG00000022460	Cpsf1	100	92.718	ENSPCOG00000020001	CPSF1	100	92.718	Propithecus_coquereli
ENSNGAG00000022460	Cpsf1	91	98.857	ENSPVAG00000006761	CPSF1	91	98.857	Pteropus_vampyrus
ENSNGAG00000022460	Cpsf1	100	78.606	ENSPNYG00000004906	cpsf1	100	78.742	Pundamilia_nyererei
ENSNGAG00000022460	Cpsf1	100	75.000	ENSPNAG00000024395	cpsf1	100	75.000	Pygocentrus_nattereri
ENSNGAG00000022460	Cpsf1	100	98.265	ENSRNOG00000030705	Cpsf1	100	98.265	Rattus_norvegicus
ENSNGAG00000022460	Cpsf1	100	96.325	ENSRBIG00000044907	CPSF1	100	96.325	Rhinopithecus_bieti
ENSNGAG00000022460	Cpsf1	100	96.255	ENSRROG00000044861	CPSF1	100	96.255	Rhinopithecus_roxellana
ENSNGAG00000022460	Cpsf1	97	96.270	ENSSBOG00000027177	CPSF1	100	96.270	Saimiri_boliviensis_boliviensis
ENSNGAG00000022460	Cpsf1	100	92.961	ENSSHAG00000006500	CPSF1	100	92.961	Sarcophilus_harrisii
ENSNGAG00000022460	Cpsf1	100	77.579	ENSSFOG00015004606	cpsf1	100	80.755	Scleropages_formosus
ENSNGAG00000022460	Cpsf1	100	77.725	ENSSMAG00000020547	cpsf1	100	77.861	Scophthalmus_maximus
ENSNGAG00000022460	Cpsf1	100	79.253	ENSSDUG00000001100	cpsf1	100	79.599	Seriola_dumerili
ENSNGAG00000022460	Cpsf1	100	79.446	ENSSLDG00000003619	cpsf1	100	79.516	Seriola_lalandi_dorsalis
ENSNGAG00000022460	Cpsf1	89	97.917	ENSSARG00000003643	CPSF1	92	97.917	Sorex_araneus
ENSNGAG00000022460	Cpsf1	96	87.815	ENSSPUG00000014396	CPSF1	100	87.815	Sphenodon_punctatus
ENSNGAG00000022460	Cpsf1	100	77.943	ENSSPAG00000005349	cpsf1	100	78.281	Stegastes_partitus
ENSNGAG00000022460	Cpsf1	100	95.222	ENSSSCG00000005906	CPSF1	100	95.222	Sus_scrofa
ENSNGAG00000022460	Cpsf1	96	77.957	ENSTRUG00000013134	cpsf1	99	78.097	Takifugu_rubripes
ENSNGAG00000022460	Cpsf1	100	78.312	ENSTNIG00000014027	cpsf1	100	78.380	Tetraodon_nigroviridis
ENSNGAG00000022460	Cpsf1	77	88.276	ENSTBEG00000001756	CPSF1	91	88.276	Tupaia_belangeri
ENSNGAG00000022460	Cpsf1	90	97.237	ENSTTRG00000001937	CPSF1	90	97.237	Tursiops_truncatus
ENSNGAG00000022460	Cpsf1	97	96.495	ENSUAMG00000006476	CPSF1	98	96.495	Ursus_americanus
ENSNGAG00000022460	Cpsf1	100	77.332	ENSXCOG00000003608	cpsf1	100	77.609	Xiphophorus_couchianus
ENSNGAG00000022460	Cpsf1	100	76.881	ENSXMAG00000005798	cpsf1	100	77.088	Xiphophorus_maculatus