EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSNGAG00000022607 (Gene tree)
Gene ID: 103727568
Gene Symbol: Apobec1
Alias: -
Full Name: apolipoprotein B mRNA editing enzyme catalytic subunit 1
Gene Type: protein_coding
Species: Nannospalax_galili
Status: putative
Strand: Minus strand
Length: 17052 bases
Position: chrKL205485.1:638777-655828
Accession: 103727568
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNGAP00000024301	APOBEC_N	PF08210.11	1.8e-29	1	1
ENSNGAP00000024301	APOBEC_C	PF05240.14	4e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNGAT00000030007	-	764	XM_008825500	ENSNGAP00000024301	229 (aa)	XP_008823722	UPI0004ED2D4B
ENSNGAT00000030011	-	129	-	ENSNGAP00000024305	43 (aa)	-	-

Gene Model

Click here to download ENSNGAG00000022607's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSNGAG00000022607's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSNGAG00000022607	Apobec1	69	32.520	ENSNGAG00000018998	Apobec3	66	36.620
ENSNGAG00000022607	Apobec1	55	32.283	ENSNGAG00000023430	Aicda	60	32.283

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNGAG00000022607	Apobec1	100	71.179	ENSG00000111701	APOBEC1	97	71.179	Homo_sapiens
ENSNGAG00000022607	Apobec1	98	71.875	ENSAMEG00000007098	APOBEC1	95	71.875	Ailuropoda_melanoleuca
ENSNGAG00000022607	Apobec1	74	41.176	ENSACAG00000028578	-	93	41.176	Anolis_carolinensis
ENSNGAG00000022607	Apobec1	100	70.742	ENSANAG00000027743	APOBEC1	92	70.742	Aotus_nancymaae
ENSNGAG00000022607	Apobec1	100	69.869	ENSBTAG00000014683	APOBEC1	97	69.869	Bos_taurus
ENSNGAG00000022607	Apobec1	93	71.028	ENSCJAG00000005398	APOBEC1	97	71.028	Callithrix_jacchus
ENSNGAG00000022607	Apobec1	100	72.489	ENSCAFG00000013901	APOBEC1	97	72.489	Canis_familiaris
ENSNGAG00000022607	Apobec1	96	72.146	ENSCAFG00020003511	APOBEC1	92	72.146	Canis_lupus_dingo
ENSNGAG00000022607	Apobec1	98	69.196	ENSCHIG00000011898	APOBEC1	93	69.196	Capra_hircus
ENSNGAG00000022607	Apobec1	61	69.286	ENSTSYG00000029141	APOBEC1	99	69.286	Carlito_syrichta
ENSNGAG00000022607	Apobec1	93	62.150	ENSCAPG00000015882	-	99	62.150	Cavia_aperea
ENSNGAG00000022607	Apobec1	100	60.262	ENSCPOG00000033068	APOBEC1	97	60.262	Cavia_porcellus
ENSNGAG00000022607	Apobec1	100	72.052	ENSCCAG00000022258	APOBEC1	97	72.052	Cebus_capucinus
ENSNGAG00000022607	Apobec1	100	72.052	ENSCATG00000021613	APOBEC1	92	72.052	Cercocebus_atys
ENSNGAG00000022607	Apobec1	100	63.319	ENSCLAG00000014645	APOBEC1	99	63.319	Chinchilla_lanigera
ENSNGAG00000022607	Apobec1	79	73.481	ENSCSAG00000009817	APOBEC1	95	73.481	Chlorocebus_sabaeus
ENSNGAG00000022607	Apobec1	79	44.920	ENSCPBG00000017398	-	82	44.920	Chrysemys_picta_bellii
ENSNGAG00000022607	Apobec1	81	47.594	ENSCPBG00000014335	-	76	47.594	Chrysemys_picta_bellii
ENSNGAG00000022607	Apobec1	79	45.652	ENSCPBG00000014331	-	76	45.652	Chrysemys_picta_bellii
ENSNGAG00000022607	Apobec1	91	39.048	ENSCPBG00000014327	-	81	39.048	Chrysemys_picta_bellii
ENSNGAG00000022607	Apobec1	83	43.750	ENSCPBG00000014328	-	84	43.750	Chrysemys_picta_bellii
ENSNGAG00000022607	Apobec1	85	45.408	ENSCPBG00000014329	-	54	45.408	Chrysemys_picta_bellii
ENSNGAG00000022607	Apobec1	97	72.646	ENSCANG00000038359	APOBEC1	97	72.646	Colobus_angolensis_palliatus
ENSNGAG00000022607	Apobec1	100	72.052	ENSCGRG00001011130	Apobec1	100	72.052	Cricetulus_griseus_chok1gshd
ENSNGAG00000022607	Apobec1	100	72.052	ENSCGRG00000008644	Apobec1	100	72.052	Cricetulus_griseus_crigri
ENSNGAG00000022607	Apobec1	100	69.432	ENSDNOG00000010926	APOBEC1	97	69.432	Dasypus_novemcinctus
ENSNGAG00000022607	Apobec1	93	64.486	ENSDORG00000023717	Apobec1	100	64.486	Dipodomys_ordii
ENSNGAG00000022607	Apobec1	100	70.000	ENSETEG00000004867	APOBEC1	97	70.000	Echinops_telfairi
ENSNGAG00000022607	Apobec1	98	74.107	ENSEASG00005015951	APOBEC1	94	74.107	Equus_asinus_asinus
ENSNGAG00000022607	Apobec1	79	74.725	ENSECAG00000017163	APOBEC1	95	74.725	Equus_caballus
ENSNGAG00000022607	Apobec1	94	62.500	ENSEEUG00000009112	-	96	62.500	Erinaceus_europaeus
ENSNGAG00000022607	Apobec1	89	50.980	ENSEEUG00000007530	-	97	50.980	Erinaceus_europaeus
ENSNGAG00000022607	Apobec1	100	72.926	ENSFCAG00000009350	APOBEC1	97	72.926	Felis_catus
ENSNGAG00000022607	Apobec1	62	50.000	ENSFALG00000007257	-	70	50.000	Ficedula_albicollis
ENSNGAG00000022607	Apobec1	88	56.219	ENSFDAG00000018470	APOBEC1	97	56.219	Fukomys_damarensis
ENSNGAG00000022607	Apobec1	95	45.662	ENSGAGG00000011837	-	88	49.704	Gopherus_agassizii
ENSNGAG00000022607	Apobec1	84	44.560	ENSGAGG00000021744	-	75	44.560	Gopherus_agassizii
ENSNGAG00000022607	Apobec1	78	40.437	ENSGAGG00000021745	-	68	40.437	Gopherus_agassizii
ENSNGAG00000022607	Apobec1	74	46.199	ENSGAGG00000006624	-	62	46.199	Gopherus_agassizii
ENSNGAG00000022607	Apobec1	76	45.856	ENSGAGG00000004947	-	90	45.856	Gopherus_agassizii
ENSNGAG00000022607	Apobec1	100	60.262	ENSHGLG00000001495	APOBEC1	97	60.262	Heterocephalus_glaber_female
ENSNGAG00000022607	Apobec1	100	59.389	ENSHGLG00100002187	APOBEC1	97	59.389	Heterocephalus_glaber_male
ENSNGAG00000022607	Apobec1	93	57.009	ENSSTOG00000021971	APOBEC1	99	71.134	Ictidomys_tridecemlineatus
ENSNGAG00000022607	Apobec1	100	71.616	ENSJJAG00000022108	Apobec1	100	71.616	Jaculus_jaculus
ENSNGAG00000022607	Apobec1	94	71.759	ENSLAFG00000030837	APOBEC1	97	71.759	Loxodonta_africana
ENSNGAG00000022607	Apobec1	100	72.489	ENSMFAG00000000277	APOBEC1	95	74.586	Macaca_fascicularis
ENSNGAG00000022607	Apobec1	100	72.052	ENSMNEG00000029670	APOBEC1	97	72.052	Macaca_nemestrina
ENSNGAG00000022607	Apobec1	100	72.052	ENSMLEG00000036301	APOBEC1	97	72.052	Mandrillus_leucophaeus
ENSNGAG00000022607	Apobec1	94	75.926	ENSMAUG00000022167	Apobec1	97	75.926	Mesocricetus_auratus
ENSNGAG00000022607	Apobec1	100	70.306	ENSMICG00000043645	APOBEC1	97	70.306	Microcebus_murinus
ENSNGAG00000022607	Apobec1	100	62.445	ENSMODG00000018004	APOBEC1	97	62.445	Monodelphis_domestica
ENSNGAG00000022607	Apobec1	99	75.877	ENSMUSG00000040613	Apobec1	99	75.877	Mus_musculus
ENSNGAG00000022607	Apobec1	99	72.807	MGP_PahariEiJ_G0022580	-	99	72.807	Mus_pahari
ENSNGAG00000022607	Apobec1	99	75.877	MGP_SPRETEiJ_G0029857	Apobec1	99	75.877	Mus_spretus
ENSNGAG00000022607	Apobec1	100	71.616	ENSMPUG00000017532	APOBEC1	97	71.616	Mustela_putorius_furo
ENSNGAG00000022607	Apobec1	100	71.179	ENSNLEG00000005342	APOBEC1	97	71.179	Nomascus_leucogenys
ENSNGAG00000022607	Apobec1	100	61.572	ENSMEUG00000013406	APOBEC1	97	61.572	Notamacropus_eugenii
ENSNGAG00000022607	Apobec1	79	60.221	ENSOPRG00000009508	-	100	60.221	Ochotona_princeps
ENSNGAG00000022607	Apobec1	100	66.812	ENSOCUG00000025736	APOBEC1	86	66.812	Oryctolagus_cuniculus
ENSNGAG00000022607	Apobec1	98	69.643	ENSOGAG00000026415	APOBEC1	95	69.643	Otolemur_garnettii
ENSNGAG00000022607	Apobec1	100	68.559	ENSOARG00000002072	APOBEC1	96	68.559	Ovis_aries
ENSNGAG00000022607	Apobec1	98	66.071	ENSPPAG00000027657	APOBEC1	94	66.071	Pan_paniscus
ENSNGAG00000022607	Apobec1	100	73.362	ENSPPRG00000012182	APOBEC1	97	73.362	Panthera_pardus
ENSNGAG00000022607	Apobec1	100	73.362	ENSPTIG00000020280	APOBEC1	97	73.362	Panthera_tigris_altaica
ENSNGAG00000022607	Apobec1	100	71.616	ENSPTRG00000004614	APOBEC1	97	71.616	Pan_troglodytes
ENSNGAG00000022607	Apobec1	100	72.489	ENSPANG00000021027	APOBEC1	97	72.489	Papio_anubis
ENSNGAG00000022607	Apobec1	55	47.500	ENSPSIG00000012791	-	71	47.500	Pelodiscus_sinensis
ENSNGAG00000022607	Apobec1	79	43.956	ENSPSIG00000012568	-	79	43.956	Pelodiscus_sinensis
ENSNGAG00000022607	Apobec1	100	75.983	ENSPEMG00000023841	Apobec1	100	75.983	Peromyscus_maniculatus_bairdii
ENSNGAG00000022607	Apobec1	100	64.192	ENSPCIG00000023973	APOBEC1	97	64.192	Phascolarctos_cinereus
ENSNGAG00000022607	Apobec1	100	71.179	ENSPPYG00000004228	APOBEC1	92	71.179	Pongo_abelii
ENSNGAG00000022607	Apobec1	82	69.519	ENSPCAG00000008733	APOBEC1	100	69.519	Procavia_capensis
ENSNGAG00000022607	Apobec1	94	71.628	ENSPCOG00000013957	APOBEC1	95	71.628	Propithecus_coquereli
ENSNGAG00000022607	Apobec1	100	57.205	ENSPVAG00000010709	APOBEC1	97	57.205	Pteropus_vampyrus
ENSNGAG00000022607	Apobec1	99	72.807	ENSRNOG00000015411	Apobec1	99	72.807	Rattus_norvegicus
ENSNGAG00000022607	Apobec1	100	71.616	ENSRBIG00000031161	APOBEC1	97	71.616	Rhinopithecus_bieti
ENSNGAG00000022607	Apobec1	100	71.616	ENSRROG00000033576	APOBEC1	97	71.616	Rhinopithecus_roxellana
ENSNGAG00000022607	Apobec1	76	71.098	ENSSBOG00000030587	APOBEC1	98	71.098	Saimiri_boliviensis_boliviensis
ENSNGAG00000022607	Apobec1	96	63.182	ENSSHAG00000008925	APOBEC1	96	63.182	Sarcophilus_harrisii
ENSNGAG00000022607	Apobec1	58	64.394	ENSSARG00000011972	-	100	64.394	Sorex_araneus
ENSNGAG00000022607	Apobec1	75	64.535	ENSSARG00000000032	-	100	64.535	Sorex_araneus
ENSNGAG00000022607	Apobec1	89	40.097	ENSSPUG00000009044	-	79	40.097	Sphenodon_punctatus
ENSNGAG00000022607	Apobec1	100	72.926	ENSSSCG00000000668	APOBEC1	97	72.926	Sus_scrofa
ENSNGAG00000022607	Apobec1	63	52.055	ENSTGUG00000013118	-	100	52.055	Taeniopygia_guttata
ENSNGAG00000022607	Apobec1	93	71.495	ENSTBEG00000010043	APOBEC1	91	71.495	Tupaia_belangeri
ENSNGAG00000022607	Apobec1	82	70.053	ENSTTRG00000014015	APOBEC1	100	70.053	Tursiops_truncatus
ENSNGAG00000022607	Apobec1	98	71.875	ENSUAMG00000011636	APOBEC1	92	71.875	Ursus_americanus
ENSNGAG00000022607	Apobec1	98	71.875	ENSUMAG00000016552	APOBEC1	92	71.875	Ursus_maritimus
ENSNGAG00000022607	Apobec1	100	68.996	ENSVPAG00000001343	APOBEC1	97	68.996	Vicugna_pacos
ENSNGAG00000022607	Apobec1	100	74.236	ENSVVUG00000010522	APOBEC1	97	74.236	Vulpes_vulpes