EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSNGAG00000023964 (Gene tree)
Gene ID: -
Gene Symbol: Xrn1
Alias: Dhm2|mXrn1
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Nannospalax_galili
Status: putative
Strand: Plus strand
Length: 82656 bases
Position: chrKL205007.1:456262-538917
Accession: 891964
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNGAP00000026266	XRN_N	PF03159.18	1.8e-96	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNGAT00000031994	-	2811	-	ENSNGAP00000026266	937 (aa)	-	-

Gene Model

Click here to download ENSNGAG00000023964's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSNGAG00000023964's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSNGAG00000023964	Xrn1	60	37.794	ENSNGAG00000018138	Xrn2	71	37.850

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNGAG00000023964	Xrn1	99	91.284	ENSG00000114127	XRN1	96	99.029	Homo_sapiens
ENSNGAG00000023964	Xrn1	99	74.322	ENSAPOG00000000622	xrn1	93	72.707	Acanthochromis_polyacanthus
ENSNGAG00000023964	Xrn1	99	91.125	ENSAMEG00000012538	XRN1	57	91.125	Ailuropoda_melanoleuca
ENSNGAG00000023964	Xrn1	99	74.010	ENSACIG00000001057	xrn1	60	73.028	Amphilophus_citrinellus
ENSNGAG00000023964	Xrn1	99	74.441	ENSAOCG00000014097	xrn1	95	62.574	Amphiprion_ocellaris
ENSNGAG00000023964	Xrn1	99	74.204	ENSAPEG00000006620	xrn1	62	73.089	Amphiprion_percula
ENSNGAG00000023964	Xrn1	99	71.746	ENSATEG00000009752	xrn1	61	71.949	Anabas_testudineus
ENSNGAG00000023964	Xrn1	97	84.080	ENSAPLG00000004905	XRN1	56	82.753	Anas_platyrhynchos
ENSNGAG00000023964	Xrn1	99	82.635	ENSACAG00000004985	XRN1	54	82.635	Anolis_carolinensis
ENSNGAG00000023964	Xrn1	99	91.892	ENSANAG00000029013	XRN1	86	91.892	Aotus_nancymaae
ENSNGAG00000023964	Xrn1	99	73.217	ENSACLG00000004806	xrn1	57	72.266	Astatotilapia_calliptera
ENSNGAG00000023964	Xrn1	99	71.290	ENSAMXG00000019370	xrn1	95	93.204	Astyanax_mexicanus
ENSNGAG00000023964	Xrn1	99	90.571	ENSBTAG00000011524	XRN1	57	94.311	Bos_taurus
ENSNGAG00000023964	Xrn1	94	50.376	WBGene00012730	xrn-1	62	49.327	Caenorhabditis_elegans
ENSNGAG00000023964	Xrn1	99	91.574	ENSCJAG00000001872	XRN1	60	91.284	Callithrix_jacchus
ENSNGAG00000023964	Xrn1	99	91.429	ENSCAFG00000007783	XRN1	56	95.210	Canis_familiaris
ENSNGAG00000023964	Xrn1	100	90.589	ENSCAFG00020009120	XRN1	99	90.589	Canis_lupus_dingo
ENSNGAG00000023964	Xrn1	99	90.650	ENSCHIG00000019192	XRN1	56	94.311	Capra_hircus
ENSNGAG00000023964	Xrn1	99	90.967	ENSTSYG00000002705	XRN1	58	90.967	Carlito_syrichta
ENSNGAG00000023964	Xrn1	97	76.696	ENSCAPG00000004604	-	99	76.696	Cavia_aperea
ENSNGAG00000023964	Xrn1	100	93.154	ENSCCAG00000034800	XRN1	99	93.154	Cebus_capucinus
ENSNGAG00000023964	Xrn1	99	92.051	ENSCATG00000041794	XRN1	58	91.759	Cercocebus_atys
ENSNGAG00000023964	Xrn1	100	91.909	ENSCLAG00000001451	XRN1	99	91.909	Chinchilla_lanigera
ENSNGAG00000023964	Xrn1	99	92.051	ENSCSAG00000011265	XRN1	57	91.759	Chlorocebus_sabaeus
ENSNGAG00000023964	Xrn1	84	57.534	ENSCSAVG00000008584	-	62	57.607	Ciona_savignyi
ENSNGAG00000023964	Xrn1	100	93.257	ENSCANG00000037495	XRN1	99	93.257	Colobus_angolensis_palliatus
ENSNGAG00000023964	Xrn1	100	92.946	ENSCGRG00001019411	Xrn1	99	92.946	Cricetulus_griseus_chok1gshd
ENSNGAG00000023964	Xrn1	100	92.946	ENSCGRG00000012464	Xrn1	99	92.946	Cricetulus_griseus_crigri
ENSNGAG00000023964	Xrn1	99	74.086	ENSCSEG00000021285	xrn1	94	94.231	Cynoglossus_semilaevis
ENSNGAG00000023964	Xrn1	99	73.408	ENSCVAG00000013089	xrn1	85	73.089	Cyprinodon_variegatus
ENSNGAG00000023964	Xrn1	99	75.436	ENSDARG00000091652	xrn1	98	73.629	Danio_rerio
ENSNGAG00000023964	Xrn1	99	90.938	ENSDORG00000013833	Xrn1	57	90.938	Dipodomys_ordii
ENSNGAG00000023964	Xrn1	94	52.534	FBgn0020261	pcm	54	52.534	Drosophila_melanogaster
ENSNGAG00000023964	Xrn1	99	94.012	ENSEASG00005002687	XRN1	99	92.427	Equus_asinus_asinus
ENSNGAG00000023964	Xrn1	99	94.311	ENSECAG00000008301	XRN1	57	94.311	Equus_caballus
ENSNGAG00000023964	Xrn1	99	74.485	ENSELUG00000000169	xrn1	56	74.485	Esox_lucius
ENSNGAG00000023964	Xrn1	99	89.429	ENSFCAG00000027589	XRN1	99	89.670	Felis_catus
ENSNGAG00000023964	Xrn1	99	83.121	ENSFALG00000007021	XRN1	55	82.166	Ficedula_albicollis
ENSNGAG00000023964	Xrn1	100	91.909	ENSFDAG00000020494	XRN1	99	91.909	Fukomys_damarensis
ENSNGAG00000023964	Xrn1	99	72.611	ENSGMOG00000006396	xrn1	56	71.429	Gadus_morhua
ENSNGAG00000023964	Xrn1	99	83.943	ENSGALG00000002706	XRN1	55	82.671	Gallus_gallus
ENSNGAG00000023964	Xrn1	99	71.900	ENSGACG00000014328	xrn1	56	72.370	Gasterosteus_aculeatus
ENSNGAG00000023964	Xrn1	99	82.698	ENSGAGG00000017535	XRN1	59	82.571	Gopherus_agassizii
ENSNGAG00000023964	Xrn1	99	91.125	ENSGGOG00000008047	XRN1	58	91.125	Gorilla_gorilla
ENSNGAG00000023964	Xrn1	99	70.906	ENSHBUG00000005908	xrn1	98	66.460	Haplochromis_burtoni
ENSNGAG00000023964	Xrn1	100	92.012	ENSHGLG00000014476	XRN1	99	92.012	Heterocephalus_glaber_female
ENSNGAG00000023964	Xrn1	100	92.012	ENSHGLG00100015130	XRN1	99	92.012	Heterocephalus_glaber_male
ENSNGAG00000023964	Xrn1	99	73.375	ENSHCOG00000014062	xrn1	62	72.910	Hippocampus_comes
ENSNGAG00000023964	Xrn1	99	75.397	ENSIPUG00000015229	xrn1	57	75.238	Ictalurus_punctatus
ENSNGAG00000023964	Xrn1	100	93.154	ENSSTOG00000013552	XRN1	99	93.154	Ictidomys_tridecemlineatus
ENSNGAG00000023964	Xrn1	97	92.226	ENSJJAG00000010863	Xrn1	99	92.226	Jaculus_jaculus
ENSNGAG00000023964	Xrn1	99	74.522	ENSKMAG00000021356	xrn1	94	72.093	Kryptolebias_marmoratus
ENSNGAG00000023964	Xrn1	99	74.281	ENSLBEG00000018656	xrn1	97	95.146	Labrus_bergylta
ENSNGAG00000023964	Xrn1	99	79.809	ENSLACG00000009020	XRN1	56	79.650	Latimeria_chalumnae
ENSNGAG00000023964	Xrn1	99	77.883	ENSLOCG00000007944	xrn1	57	77.567	Lepisosteus_oculatus
ENSNGAG00000023964	Xrn1	99	91.256	ENSLAFG00000015426	XRN1	92	91.256	Loxodonta_africana
ENSNGAG00000023964	Xrn1	99	92.051	ENSMFAG00000032599	XRN1	58	91.759	Macaca_fascicularis
ENSNGAG00000023964	Xrn1	99	92.051	ENSMMUG00000014038	XRN1	58	91.759	Macaca_mulatta
ENSNGAG00000023964	Xrn1	99	91.733	ENSMNEG00000034217	XRN1	58	91.442	Macaca_nemestrina
ENSNGAG00000023964	Xrn1	99	75.120	ENSMAMG00000013219	xrn1	94	72.614	Mastacembelus_armatus
ENSNGAG00000023964	Xrn1	99	72.900	ENSMZEG00005015099	xrn1	57	71.949	Maylandia_zebra
ENSNGAG00000023964	Xrn1	97	79.714	ENSMGAG00000006333	XRN1	56	79.714	Meleagris_gallopavo
ENSNGAG00000023964	Xrn1	99	91.442	ENSMICG00000048948	XRN1	96	99.029	Microcebus_murinus
ENSNGAG00000023964	Xrn1	99	91.693	ENSMOCG00000008665	Xrn1	99	91.693	Microtus_ochrogaster
ENSNGAG00000023964	Xrn1	53	63.971	ENSMMOG00000020896	-	96	63.787	Mola_mola
ENSNGAG00000023964	Xrn1	99	86.571	ENSMODG00000021236	XRN1	57	86.571	Monodelphis_domestica
ENSNGAG00000023964	Xrn1	99	67.409	ENSMALG00000004098	xrn1	57	67.091	Monopterus_albus
ENSNGAG00000023964	Xrn1	100	92.427	MGP_CAROLIEiJ_G0032535	Xrn1	100	100.000	Mus_caroli
ENSNGAG00000023964	Xrn1	100	92.427	ENSMUSG00000032410	Xrn1	100	100.000	Mus_musculus
ENSNGAG00000023964	Xrn1	100	91.909	MGP_PahariEiJ_G0015404	Xrn1	100	100.000	Mus_pahari
ENSNGAG00000023964	Xrn1	100	92.427	MGP_SPRETEiJ_G0033678	Xrn1	100	100.000	Mus_spretus
ENSNGAG00000023964	Xrn1	99	91.561	ENSMPUG00000012040	XRN1	57	91.429	Mustela_putorius_furo
ENSNGAG00000023964	Xrn1	98	91.097	ENSMLUG00000016885	XRN1	56	91.097	Myotis_lucifugus
ENSNGAG00000023964	Xrn1	99	92.051	ENSNLEG00000004726	XRN1	58	91.759	Nomascus_leucogenys
ENSNGAG00000023964	Xrn1	99	73.810	ENSONIG00000016673	xrn1	64	72.857	Oreochromis_niloticus
ENSNGAG00000023964	Xrn1	85	84.000	ENSOANG00000006735	XRN1	53	84.000	Ornithorhynchus_anatinus
ENSNGAG00000023964	Xrn1	99	91.587	ENSOCUG00000001861	XRN1	56	91.587	Oryctolagus_cuniculus
ENSNGAG00000023964	Xrn1	99	75.238	ENSORLG00000013005	xrn1	58	75.079	Oryzias_latipes
ENSNGAG00000023964	Xrn1	99	75.238	ENSORLG00020005559	xrn1	59	74.762	Oryzias_latipes_hni
ENSNGAG00000023964	Xrn1	99	74.762	ENSORLG00015022523	xrn1	61	74.286	Oryzias_latipes_hsok
ENSNGAG00000023964	Xrn1	99	74.682	ENSOMEG00000015397	xrn1	62	73.726	Oryzias_melastigma
ENSNGAG00000023964	Xrn1	99	89.714	ENSOGAG00000000170	XRN1	58	89.714	Otolemur_garnettii
ENSNGAG00000023964	Xrn1	99	90.808	ENSOARG00000006343	XRN1	57	94.311	Ovis_aries
ENSNGAG00000023964	Xrn1	99	91.143	ENSPPAG00000010180	XRN1	58	91.143	Pan_paniscus
ENSNGAG00000023964	Xrn1	99	91.587	ENSPPRG00000007125	XRN1	57	94.611	Panthera_pardus
ENSNGAG00000023964	Xrn1	99	91.587	ENSPTIG00000021081	XRN1	57	94.611	Panthera_tigris_altaica
ENSNGAG00000023964	Xrn1	99	91.143	ENSPTRG00000015482	XRN1	58	91.143	Pan_troglodytes
ENSNGAG00000023964	Xrn1	99	91.759	ENSPANG00000010638	XRN1	58	91.759	Papio_anubis
ENSNGAG00000023964	Xrn1	99	83.201	ENSPSIG00000018050	XRN1	56	82.938	Pelodiscus_sinensis
ENSNGAG00000023964	Xrn1	99	71.562	ENSPMGG00000002648	xrn1	98	71.773	Periophthalmus_magnuspinnatus
ENSNGAG00000023964	Xrn1	100	92.842	ENSPEMG00000020610	Xrn1	99	92.842	Peromyscus_maniculatus_bairdii
ENSNGAG00000023964	Xrn1	92	52.747	ENSPMAG00000002975	xrn1	73	71.839	Petromyzon_marinus
ENSNGAG00000023964	Xrn1	99	86.264	ENSPCIG00000028735	XRN1	99	85.224	Phascolarctos_cinereus
ENSNGAG00000023964	Xrn1	99	74.016	ENSPFOG00000013932	xrn1	62	74.016	Poecilia_formosa
ENSNGAG00000023964	Xrn1	99	73.885	ENSPLAG00000021653	xrn1	62	74.444	Poecilia_latipinna
ENSNGAG00000023964	Xrn1	99	73.693	ENSPMEG00000003076	xrn1	61	73.701	Poecilia_mexicana
ENSNGAG00000023964	Xrn1	99	73.502	ENSPREG00000021147	xrn1	56	73.502	Poecilia_reticulata
ENSNGAG00000023964	Xrn1	99	91.442	ENSPPYG00000014172	XRN1	58	91.442	Pongo_abelii
ENSNGAG00000023964	Xrn1	92	89.927	ENSPCAG00000005638	XRN1	58	89.927	Procavia_capensis
ENSNGAG00000023964	Xrn1	100	92.946	ENSPCOG00000013089	XRN1	99	92.946	Propithecus_coquereli
ENSNGAG00000023964	Xrn1	99	94.578	ENSPVAG00000016265	XRN1	56	94.578	Pteropus_vampyrus
ENSNGAG00000023964	Xrn1	99	73.609	ENSPNYG00000010570	xrn1	57	72.655	Pundamilia_nyererei
ENSNGAG00000023964	Xrn1	99	72.512	ENSPNAG00000023531	xrn1	58	72.038	Pygocentrus_nattereri
ENSNGAG00000023964	Xrn1	99	90.967	ENSRNOG00000042951	Xrn1	57	90.967	Rattus_norvegicus
ENSNGAG00000023964	Xrn1	99	91.574	ENSRBIG00000041227	XRN1	58	91.284	Rhinopithecus_bieti
ENSNGAG00000023964	Xrn1	90	51.366	YGL173C	XRN1	56	51.366	Saccharomyces_cerevisiae
ENSNGAG00000023964	Xrn1	99	91.601	ENSSBOG00000029561	XRN1	58	91.601	Saimiri_boliviensis_boliviensis
ENSNGAG00000023964	Xrn1	97	86.000	ENSSHAG00000016207	XRN1	57	86.000	Sarcophilus_harrisii
ENSNGAG00000023964	Xrn1	99	74.682	ENSSFOG00015024211	xrn1	59	74.682	Scleropages_formosus
ENSNGAG00000023964	Xrn1	99	75.594	ENSSMAG00000016534	xrn1	61	74.326	Scophthalmus_maximus
ENSNGAG00000023964	Xrn1	99	75.277	ENSSDUG00000010306	xrn1	62	75.197	Seriola_dumerili
ENSNGAG00000023964	Xrn1	99	75.277	ENSSLDG00000021543	xrn1	61	75.197	Seriola_lalandi_dorsalis
ENSNGAG00000023964	Xrn1	89	87.894	ENSSARG00000007741	-	63	87.894	Sorex_araneus
ENSNGAG00000023964	Xrn1	99	83.121	ENSTGUG00000008498	XRN1	57	82.166	Taeniopygia_guttata
ENSNGAG00000023964	Xrn1	99	74.121	ENSTRUG00000004895	xrn1	96	72.436	Takifugu_rubripes
ENSNGAG00000023964	Xrn1	98	72.772	ENSTNIG00000017615	xrn1	58	69.731	Tetraodon_nigroviridis
ENSNGAG00000023964	Xrn1	99	81.440	ENSTBEG00000003256	XRN1	59	81.440	Tupaia_belangeri
ENSNGAG00000023964	Xrn1	99	94.880	ENSTTRG00000012914	XRN1	57	94.880	Tursiops_truncatus
ENSNGAG00000023964	Xrn1	99	91.714	ENSUAMG00000001608	XRN1	99	89.627	Ursus_americanus
ENSNGAG00000023964	Xrn1	99	91.733	ENSUMAG00000013625	XRN1	57	91.714	Ursus_maritimus
ENSNGAG00000023964	Xrn1	99	91.242	ENSVPAG00000004690	XRN1	58	90.952	Vicugna_pacos
ENSNGAG00000023964	Xrn1	100	93.050	ENSVVUG00000024461	XRN1	99	93.050	Vulpes_vulpes
ENSNGAG00000023964	Xrn1	99	78.006	ENSXETG00000000619	xrn1	97	81.183	Xenopus_tropicalis
ENSNGAG00000023964	Xrn1	99	74.045	ENSXCOG00000007917	xrn1	57	74.363	Xiphophorus_couchianus
ENSNGAG00000023964	Xrn1	99	73.089	ENSXMAG00000018320	xrn1	60	73.408	Xiphophorus_maculatus