EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSNGAG00000024107 (Gene tree)
Gene ID: 103726857
Gene Symbol: Upf1
Alias: B430202H16Rik|PNORF-1|Rent1
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Nannospalax_galili
Status: putative
Strand: Minus strand
Length: 22622 bases
Position: chrKL205470.1:983123-1005744
Accession: 103726857
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNGAP00000026472	UPF1_Zn_bind	PF09416.10	5.9e-75	1	1
ENSNGAP00000026472	ResIII	PF04851.15	2.4e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNGAT00000032203	-	3712	XM_008824529	ENSNGAP00000026472	1127 (aa)	XP_008822751	UPI0004ED175E

Gene Model

Click here to download ENSNGAG00000024107's gene model file

Pathways

Pathway ID	Pathway Name	Source
ngi03013	RNA transport	KEGG
ngi03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSNGAG00000024107's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNGAG00000024107	Upf1	100	98.671	ENSG00000005007	UPF1	100	98.671	Homo_sapiens
ENSNGAG00000024107	Upf1	100	90.115	ENSAPOG00000023773	upf1	100	90.203	Acanthochromis_polyacanthus
ENSNGAG00000024107	Upf1	100	91.062	ENSAPOG00000010916	-	100	91.062	Acanthochromis_polyacanthus
ENSNGAG00000024107	Upf1	100	97.524	ENSAMEG00000011474	UPF1	100	97.524	Ailuropoda_melanoleuca
ENSNGAG00000024107	Upf1	100	89.859	ENSACIG00000019949	upf1	100	90.291	Amphilophus_citrinellus
ENSNGAG00000024107	Upf1	92	93.050	ENSACIG00000010985	-	100	93.147	Amphilophus_citrinellus
ENSNGAG00000024107	Upf1	100	89.628	ENSAOCG00000018519	upf1	100	90.122	Amphiprion_ocellaris
ENSNGAG00000024107	Upf1	100	91.150	ENSAOCG00000006352	-	100	91.150	Amphiprion_ocellaris
ENSNGAG00000024107	Upf1	100	89.628	ENSAPEG00000016344	upf1	100	90.122	Amphiprion_percula
ENSNGAG00000024107	Upf1	100	91.150	ENSAPEG00000006292	-	100	91.150	Amphiprion_percula
ENSNGAG00000024107	Upf1	100	88.918	ENSATEG00000017867	upf1	100	89.616	Anabas_testudineus
ENSNGAG00000024107	Upf1	100	91.239	ENSATEG00000016606	-	100	91.239	Anabas_testudineus
ENSNGAG00000024107	Upf1	93	97.526	ENSAPLG00000009175	UPF1	99	97.526	Anas_platyrhynchos
ENSNGAG00000024107	Upf1	95	96.015	ENSANAG00000024107	UPF1	98	96.015	Aotus_nancymaae
ENSNGAG00000024107	Upf1	100	91.054	ENSACLG00000022630	-	100	90.965	Astatotilapia_calliptera
ENSNGAG00000024107	Upf1	100	89.594	ENSACLG00000007181	upf1	100	90.026	Astatotilapia_calliptera
ENSNGAG00000024107	Upf1	100	91.770	ENSAMXG00000042187	upf1	100	92.212	Astyanax_mexicanus
ENSNGAG00000024107	Upf1	100	98.404	ENSBTAG00000020922	UPF1	100	98.404	Bos_taurus
ENSNGAG00000024107	Upf1	89	50.244	WBGene00004880	smg-2	99	47.772	Caenorhabditis_elegans
ENSNGAG00000024107	Upf1	100	98.671	ENSCJAG00000019627	UPF1	100	98.671	Callithrix_jacchus
ENSNGAG00000024107	Upf1	100	98.496	ENSCAFG00000014578	UPF1	100	98.496	Canis_familiaris
ENSNGAG00000024107	Upf1	100	97.522	ENSCAFG00020012347	UPF1	100	97.522	Canis_lupus_dingo
ENSNGAG00000024107	Upf1	100	97.959	ENSCHIG00000011018	UPF1	100	97.959	Capra_hircus
ENSNGAG00000024107	Upf1	96	97.130	ENSTSYG00000008877	UPF1	99	97.130	Carlito_syrichta
ENSNGAG00000024107	Upf1	93	98.194	ENSCAPG00000005758	UPF1	95	98.194	Cavia_aperea
ENSNGAG00000024107	Upf1	100	96.103	ENSCPOG00000025463	UPF1	100	96.103	Cavia_porcellus
ENSNGAG00000024107	Upf1	100	98.403	ENSCCAG00000032175	UPF1	100	98.403	Cebus_capucinus
ENSNGAG00000024107	Upf1	95	97.657	ENSCATG00000040306	UPF1	98	97.657	Cercocebus_atys
ENSNGAG00000024107	Upf1	96	97.874	ENSCLAG00000004037	UPF1	100	99.144	Chinchilla_lanigera
ENSNGAG00000024107	Upf1	100	97.609	ENSCSAG00000005276	UPF1	100	97.609	Chlorocebus_sabaeus
ENSNGAG00000024107	Upf1	100	95.406	ENSCPBG00000012513	UPF1	100	95.406	Chrysemys_picta_bellii
ENSNGAG00000024107	Upf1	78	77.551	ENSCING00000021399	-	99	77.438	Ciona_intestinalis
ENSNGAG00000024107	Upf1	99	71.491	ENSCSAVG00000006533	-	99	71.404	Ciona_savignyi
ENSNGAG00000024107	Upf1	95	98.131	ENSCANG00000029819	UPF1	99	98.131	Colobus_angolensis_palliatus
ENSNGAG00000024107	Upf1	100	98.403	ENSCGRG00001021067	Upf1	100	98.403	Cricetulus_griseus_chok1gshd
ENSNGAG00000024107	Upf1	95	98.690	ENSCGRG00000013480	Upf1	99	98.690	Cricetulus_griseus_crigri
ENSNGAG00000024107	Upf1	100	85.398	ENSCSEG00000017239	upf1	100	85.487	Cynoglossus_semilaevis
ENSNGAG00000024107	Upf1	100	91.143	ENSCSEG00000016159	-	100	91.054	Cynoglossus_semilaevis
ENSNGAG00000024107	Upf1	100	91.062	ENSCVAG00000010561	upf1	100	90.973	Cyprinodon_variegatus
ENSNGAG00000024107	Upf1	100	91.593	ENSDARG00000016302	upf1	100	92.035	Danio_rerio
ENSNGAG00000024107	Upf1	96	95.088	ENSDORG00000009984	Upf1	97	95.088	Dipodomys_ordii
ENSNGAG00000024107	Upf1	85	69.877	FBgn0030354	Upf1	84	66.477	Drosophila_melanogaster
ENSNGAG00000024107	Upf1	56	84.345	ENSEBUG00000010069	upf1	96	84.665	Eptatretus_burgeri
ENSNGAG00000024107	Upf1	100	97.695	ENSEASG00005006549	UPF1	100	97.695	Equus_asinus_asinus
ENSNGAG00000024107	Upf1	100	97.695	ENSECAG00000010639	UPF1	100	97.695	Equus_caballus
ENSNGAG00000024107	Upf1	100	90.053	ENSELUG00000012916	-	100	90.501	Esox_lucius
ENSNGAG00000024107	Upf1	100	89.339	ENSELUG00000020917	upf1	100	89.604	Esox_lucius
ENSNGAG00000024107	Upf1	100	98.407	ENSFCAG00000009757	UPF1	100	98.407	Felis_catus
ENSNGAG00000024107	Upf1	93	96.682	ENSFALG00000009312	UPF1	96	96.682	Ficedula_albicollis
ENSNGAG00000024107	Upf1	97	96.786	ENSFDAG00000014816	UPF1	100	99.049	Fukomys_damarensis
ENSNGAG00000024107	Upf1	85	92.665	ENSFHEG00000016276	-	96	92.665	Fundulus_heteroclitus
ENSNGAG00000024107	Upf1	100	87.621	ENSFHEG00000006428	upf1	100	87.621	Fundulus_heteroclitus
ENSNGAG00000024107	Upf1	100	90.708	ENSGMOG00000007541	upf1	100	91.504	Gadus_morhua
ENSNGAG00000024107	Upf1	100	96.103	ENSGALG00000003220	UPF1	100	96.103	Gallus_gallus
ENSNGAG00000024107	Upf1	62	93.475	ENSGAFG00000015443	-	88	91.209	Gambusia_affinis
ENSNGAG00000024107	Upf1	100	90.345	ENSGAFG00000004831	upf1	100	90.700	Gambusia_affinis
ENSNGAG00000024107	Upf1	100	95.833	ENSGAGG00000022217	UPF1	100	95.833	Gopherus_agassizii
ENSNGAG00000024107	Upf1	93	97.911	ENSGGOG00000002608	UPF1	99	97.911	Gorilla_gorilla
ENSNGAG00000024107	Upf1	87	100.000	ENSHBUG00000008939	upf1	95	100.000	Haplochromis_burtoni
ENSNGAG00000024107	Upf1	90	85.057	ENSHBUG00000014694	upf1	100	85.057	Haplochromis_burtoni
ENSNGAG00000024107	Upf1	100	98.406	ENSHGLG00000010900	UPF1	100	98.406	Heterocephalus_glaber_female
ENSNGAG00000024107	Upf1	96	95.032	ENSHGLG00100005904	UPF1	99	95.032	Heterocephalus_glaber_male
ENSNGAG00000024107	Upf1	100	90.168	ENSHCOG00000008918	upf1	100	92.153	Hippocampus_comes
ENSNGAG00000024107	Upf1	100	92.212	ENSIPUG00000005108	UPF1	100	92.566	Ictalurus_punctatus
ENSNGAG00000024107	Upf1	100	98.580	ENSSTOG00000009196	UPF1	100	98.580	Ictidomys_tridecemlineatus
ENSNGAG00000024107	Upf1	100	98.846	ENSJJAG00000023151	Upf1	100	98.846	Jaculus_jaculus
ENSNGAG00000024107	Upf1	100	91.239	ENSKMAG00000004962	upf1	100	91.150	Kryptolebias_marmoratus
ENSNGAG00000024107	Upf1	100	88.374	ENSLBEG00000014862	upf1	100	89.423	Labrus_bergylta
ENSNGAG00000024107	Upf1	100	91.150	ENSLBEG00000027848	-	100	91.150	Labrus_bergylta
ENSNGAG00000024107	Upf1	62	96.413	ENSLACG00000008482	UPF1	100	96.413	Latimeria_chalumnae
ENSNGAG00000024107	Upf1	100	93.711	ENSLOCG00000002072	upf1	100	93.711	Lepisosteus_oculatus
ENSNGAG00000024107	Upf1	100	98.319	ENSLAFG00000014963	UPF1	100	98.319	Loxodonta_africana
ENSNGAG00000024107	Upf1	100	98.671	ENSMFAG00000037748	UPF1	100	98.671	Macaca_fascicularis
ENSNGAG00000024107	Upf1	100	98.671	ENSMMUG00000023286	UPF1	100	98.671	Macaca_mulatta
ENSNGAG00000024107	Upf1	100	98.671	ENSMNEG00000000046	UPF1	100	98.671	Macaca_nemestrina
ENSNGAG00000024107	Upf1	93	98.954	ENSMLEG00000028404	UPF1	100	98.954	Mandrillus_leucophaeus
ENSNGAG00000024107	Upf1	100	88.569	ENSMAMG00000006229	upf1	100	89.529	Mastacembelus_armatus
ENSNGAG00000024107	Upf1	100	90.354	ENSMAMG00000006231	-	100	90.796	Mastacembelus_armatus
ENSNGAG00000024107	Upf1	100	88.666	ENSMZEG00005003489	upf1	100	89.746	Maylandia_zebra
ENSNGAG00000024107	Upf1	100	91.054	ENSMZEG00005016386	-	100	90.965	Maylandia_zebra
ENSNGAG00000024107	Upf1	93	97.053	ENSMGAG00000004745	UPF1	100	97.053	Meleagris_gallopavo
ENSNGAG00000024107	Upf1	95	97.959	ENSMAUG00000011398	Upf1	97	97.959	Mesocricetus_auratus
ENSNGAG00000024107	Upf1	100	97.609	ENSMICG00000001659	UPF1	100	97.609	Microcebus_murinus
ENSNGAG00000024107	Upf1	100	99.201	ENSMOCG00000005699	Upf1	100	99.201	Microtus_ochrogaster
ENSNGAG00000024107	Upf1	100	89.539	ENSMMOG00000007881	upf1	100	89.903	Mola_mola
ENSNGAG00000024107	Upf1	93	90.978	ENSMMOG00000007537	-	99	91.073	Mola_mola
ENSNGAG00000024107	Upf1	100	97.352	ENSMODG00000003689	UPF1	100	97.352	Monodelphis_domestica
ENSNGAG00000024107	Upf1	100	89.868	ENSMALG00000018100	-	100	89.868	Monopterus_albus
ENSNGAG00000024107	Upf1	100	89.628	ENSMALG00000000144	upf1	100	89.805	Monopterus_albus
ENSNGAG00000024107	Upf1	100	99.201	MGP_CAROLIEiJ_G0031142	Upf1	100	99.201	Mus_caroli
ENSNGAG00000024107	Upf1	100	99.201	ENSMUSG00000058301	Upf1	100	99.201	Mus_musculus
ENSNGAG00000024107	Upf1	100	99.201	MGP_PahariEiJ_G0021607	Upf1	100	99.201	Mus_pahari
ENSNGAG00000024107	Upf1	100	99.201	MGP_SPRETEiJ_G0032260	Upf1	100	99.201	Mus_spretus
ENSNGAG00000024107	Upf1	100	97.522	ENSMPUG00000015516	UPF1	100	97.522	Mustela_putorius_furo
ENSNGAG00000024107	Upf1	99	97.161	ENSMLUG00000012122	UPF1	99	97.161	Myotis_lucifugus
ENSNGAG00000024107	Upf1	100	87.919	ENSNBRG00000000670	upf1	100	88.350	Neolamprologus_brichardi
ENSNGAG00000024107	Upf1	100	88.793	ENSNBRG00000022069	-	100	92.115	Neolamprologus_brichardi
ENSNGAG00000024107	Upf1	93	93.156	ENSNLEG00000006062	UPF1	100	93.156	Nomascus_leucogenys
ENSNGAG00000024107	Upf1	83	93.333	ENSMEUG00000014146	-	83	93.333	Notamacropus_eugenii
ENSNGAG00000024107	Upf1	93	90.114	ENSOPRG00000014018	UPF1	100	90.114	Ochotona_princeps
ENSNGAG00000024107	Upf1	100	97.516	ENSODEG00000012426	UPF1	100	97.516	Octodon_degus
ENSNGAG00000024107	Upf1	100	89.102	ENSONIG00000010452	upf1	100	90.184	Oreochromis_niloticus
ENSNGAG00000024107	Upf1	100	91.143	ENSONIG00000012729	-	100	91.054	Oreochromis_niloticus
ENSNGAG00000024107	Upf1	100	96.903	ENSOANG00000004568	UPF1	100	96.903	Ornithorhynchus_anatinus
ENSNGAG00000024107	Upf1	100	90.973	ENSORLG00000008453	upf1	100	90.973	Oryzias_latipes
ENSNGAG00000024107	Upf1	100	90.805	ENSORLG00020014758	upf1	100	90.805	Oryzias_latipes_hni
ENSNGAG00000024107	Upf1	100	90.805	ENSORLG00015010165	upf1	100	90.805	Oryzias_latipes_hsok
ENSNGAG00000024107	Upf1	100	91.062	ENSOMEG00000003665	upf1	100	90.973	Oryzias_melastigma
ENSNGAG00000024107	Upf1	100	97.786	ENSOGAG00000012866	UPF1	100	97.786	Otolemur_garnettii
ENSNGAG00000024107	Upf1	96	96.133	ENSOARG00000010739	UPF1	100	96.133	Ovis_aries
ENSNGAG00000024107	Upf1	95	98.131	ENSPPAG00000043884	UPF1	97	98.131	Pan_paniscus
ENSNGAG00000024107	Upf1	100	98.407	ENSPPRG00000023470	UPF1	100	98.407	Panthera_pardus
ENSNGAG00000024107	Upf1	93	95.909	ENSPTIG00000010159	UPF1	99	95.909	Panthera_tigris_altaica
ENSNGAG00000024107	Upf1	100	98.671	ENSPTRG00000010721	UPF1	100	98.671	Pan_troglodytes
ENSNGAG00000024107	Upf1	100	98.671	ENSPANG00000008847	UPF1	100	98.671	Papio_anubis
ENSNGAG00000024107	Upf1	94	91.276	ENSPKIG00000006069	upf1	99	91.182	Paramormyrops_kingsleyae
ENSNGAG00000024107	Upf1	68	97.255	ENSPSIG00000009491	UPF1	100	97.255	Pelodiscus_sinensis
ENSNGAG00000024107	Upf1	100	87.996	ENSPMGG00000017327	upf1	100	88.106	Periophthalmus_magnuspinnatus
ENSNGAG00000024107	Upf1	100	99.379	ENSPEMG00000001085	Upf1	100	99.379	Peromyscus_maniculatus_bairdii
ENSNGAG00000024107	Upf1	100	86.879	ENSPMAG00000001206	upf1	100	86.320	Petromyzon_marinus
ENSNGAG00000024107	Upf1	100	96.988	ENSPCIG00000006156	UPF1	100	96.988	Phascolarctos_cinereus
ENSNGAG00000024107	Upf1	100	88.323	ENSPLAG00000018155	-	100	88.235	Poecilia_latipinna
ENSNGAG00000024107	Upf1	100	90.434	ENSPLAG00000016232	-	100	90.788	Poecilia_latipinna
ENSNGAG00000024107	Upf1	100	88.781	ENSPMEG00000011443	-	100	88.693	Poecilia_mexicana
ENSNGAG00000024107	Upf1	100	90.523	ENSPMEG00000016319	-	100	90.877	Poecilia_mexicana
ENSNGAG00000024107	Upf1	100	90.257	ENSPREG00000011247	-	100	90.611	Poecilia_reticulata
ENSNGAG00000024107	Upf1	100	88.529	ENSPREG00000009940	upf1	100	88.529	Poecilia_reticulata
ENSNGAG00000024107	Upf1	100	93.711	ENSPPYG00000009752	UPF1	100	93.711	Pongo_abelii
ENSNGAG00000024107	Upf1	76	100.000	ENSPCAG00000012962	UPF1	76	100.000	Procavia_capensis
ENSNGAG00000024107	Upf1	100	98.671	ENSPCOG00000023813	UPF1	100	98.671	Propithecus_coquereli
ENSNGAG00000024107	Upf1	69	100.000	ENSPVAG00000003183	UPF1	69	100.000	Pteropus_vampyrus
ENSNGAG00000024107	Upf1	100	88.666	ENSPNYG00000003694	upf1	100	89.746	Pundamilia_nyererei
ENSNGAG00000024107	Upf1	100	91.054	ENSPNYG00000016731	-	100	90.965	Pundamilia_nyererei
ENSNGAG00000024107	Upf1	100	91.770	ENSPNAG00000025614	upf1	100	92.212	Pygocentrus_nattereri
ENSNGAG00000024107	Upf1	100	99.290	ENSRNOG00000020134	Upf1	100	99.290	Rattus_norvegicus
ENSNGAG00000024107	Upf1	95	95.794	ENSRBIG00000013894	UPF1	98	97.403	Rhinopithecus_bieti
ENSNGAG00000024107	Upf1	95	98.131	ENSRROG00000040935	UPF1	99	98.131	Rhinopithecus_roxellana
ENSNGAG00000024107	Upf1	76	55.309	YMR080C	NAM7	86	55.309	Saccharomyces_cerevisiae
ENSNGAG00000024107	Upf1	95	97.220	ENSSBOG00000023632	UPF1	99	97.220	Saimiri_boliviensis_boliviensis
ENSNGAG00000024107	Upf1	93	98.196	ENSSHAG00000010499	UPF1	100	98.196	Sarcophilus_harrisii
ENSNGAG00000024107	Upf1	100	93.977	ENSSFOG00015021095	upf1	99	95.913	Scleropages_formosus
ENSNGAG00000024107	Upf1	100	88.024	ENSSMAG00000005055	upf1	100	88.734	Scophthalmus_maximus
ENSNGAG00000024107	Upf1	100	91.150	ENSSMAG00000021018	-	100	91.150	Scophthalmus_maximus
ENSNGAG00000024107	Upf1	100	88.831	ENSSDUG00000013320	upf1	100	89.616	Seriola_dumerili
ENSNGAG00000024107	Upf1	100	91.327	ENSSDUG00000009629	-	100	91.327	Seriola_dumerili
ENSNGAG00000024107	Upf1	100	89.613	ENSSLDG00000020868	upf1	100	89.895	Seriola_lalandi_dorsalis
ENSNGAG00000024107	Upf1	100	91.327	ENSSLDG00000006878	-	100	91.327	Seriola_lalandi_dorsalis
ENSNGAG00000024107	Upf1	100	95.656	ENSSPUG00000010538	UPF1	100	95.656	Sphenodon_punctatus
ENSNGAG00000024107	Upf1	100	88.043	ENSSPAG00000000003	upf1	100	88.173	Stegastes_partitus
ENSNGAG00000024107	Upf1	100	91.143	ENSSPAG00000011521	-	100	91.054	Stegastes_partitus
ENSNGAG00000024107	Upf1	100	98.493	ENSSSCG00000039301	UPF1	100	98.493	Sus_scrofa
ENSNGAG00000024107	Upf1	83	89.468	ENSTGUG00000001057	UPF1	100	95.421	Taeniopygia_guttata
ENSNGAG00000024107	Upf1	100	89.390	ENSTRUG00000000150	upf1	100	89.362	Takifugu_rubripes
ENSNGAG00000024107	Upf1	100	90.080	ENSTRUG00000005131	-	100	90.080	Takifugu_rubripes
ENSNGAG00000024107	Upf1	100	93.351	ENSTTRG00000011544	UPF1	100	92.996	Tursiops_truncatus
ENSNGAG00000024107	Upf1	100	97.434	ENSUAMG00000007093	UPF1	100	97.434	Ursus_americanus
ENSNGAG00000024107	Upf1	95	98.036	ENSUMAG00000006652	UPF1	99	98.036	Ursus_maritimus
ENSNGAG00000024107	Upf1	100	97.522	ENSVVUG00000007797	UPF1	100	97.522	Vulpes_vulpes
ENSNGAG00000024107	Upf1	100	82.115	ENSXETG00000013602	upf1	100	82.026	Xenopus_tropicalis
ENSNGAG00000024107	Upf1	92	92.610	ENSXCOG00000005764	-	100	93.090	Xiphophorus_couchianus
ENSNGAG00000024107	Upf1	97	88.462	ENSXCOG00000015275	-	96	88.370	Xiphophorus_couchianus
ENSNGAG00000024107	Upf1	100	88.751	ENSXMAG00000001703	-	100	88.663	Xiphophorus_maculatus
ENSNGAG00000024107	Upf1	100	90.345	ENSXMAG00000002540	-	100	90.700	Xiphophorus_maculatus