EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSNLEG00000003062 (Gene tree)
Gene ID: 100601173
Gene Symbol: -
Alias: -
Full Name: RAD54 homolog B
Gene Type: protein_coding
Species: Nomascus_leucogenys
Status: putative
Strand: Plus strand
Length: 100224 bases
Position: chr16:13955025-14055248
Accession: 100600836
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNLEP00000035790	ResIII	PF04851.15	1.1e-11	1	1
ENSNLEP00000003800	ResIII	PF04851.15	1.5e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNLET00000046278	-	3096	XM_012496045	ENSNLEP00000035790	727 (aa)	XP_012351499	A0A2I3GX13
ENSNLET00000039875	-	5548	XM_003268319	ENSNLEP00000048901	299 (aa)	XP_003268367	A0A2I3HZI0
ENSNLET00000046330	-	5364	XM_012496046	ENSNLEP00000037862	117 (aa)	XP_012351500	A0A2I3H325
ENSNLET00000003991	-	3079	XM_003268318	ENSNLEP00000003800	911 (aa)	XP_003268366	G1QS82

Gene Model

Click here to download ENSNLEG00000003062's gene model file

Pathways

Pathway ID	Pathway Name	Source
nle03440	Homologous recombination	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSNLEG00000003062's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSNLEG00000003062	-	79	47.279	ENSNLEG00000016548	RAD54L	77	47.279
ENSNLEG00000003062	-	68	33.017	ENSNLEG00000014225	SMARCAD1	84	33.017
ENSNLEG00000003062	-	67	34.091	ENSNLEG00000012987	HELLS	67	34.091
ENSNLEG00000003062	-	57	42.308	ENSNLEG00000001144	ATRX	55	31.949
ENSNLEG00000003062	-	78	31.464	ENSNLEG00000016784	ERCC6L2	87	31.464
ENSNLEG00000003062	-	69	31.518	ENSNLEG00000000179	CHD1L	50	31.518

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNLEG00000003062	-	99	99.174	ENSG00000265817	FSBP	100	99.174	Homo_sapiens
ENSNLEG00000003062	-	99	99.174	ENSG00000197275	RAD54B	100	98.681	Homo_sapiens
ENSNLEG00000003062	-	99	90.483	ENSAMEG00000005834	-	99	87.473	Ailuropoda_melanoleuca
ENSNLEG00000003062	-	99	58.197	ENSACIG00000013005	rad54b	99	54.585	Amphilophus_citrinellus
ENSNLEG00000003062	-	99	59.128	ENSAOCG00000008523	rad54b	99	54.749	Amphiprion_ocellaris
ENSNLEG00000003062	-	99	57.787	ENSAPEG00000001673	rad54b	99	54.476	Amphiprion_percula
ENSNLEG00000003062	-	99	57.629	ENSATEG00000001527	rad54b	99	53.762	Anabas_testudineus
ENSNLEG00000003062	-	100	74.760	ENSAPLG00000014366	-	100	69.164	Anas_platyrhynchos
ENSNLEG00000003062	-	99	70.702	ENSACAG00000003671	-	99	71.106	Anolis_carolinensis
ENSNLEG00000003062	-	89	94.915	ENSANAG00000019528	-	100	94.915	Aotus_nancymaae
ENSNLEG00000003062	-	99	57.787	ENSACLG00000007826	rad54b	99	54.039	Astatotilapia_calliptera
ENSNLEG00000003062	-	98	57.163	ENSAMXG00000039985	rad54b	97	56.618	Astyanax_mexicanus
ENSNLEG00000003062	-	99	88.828	ENSBTAG00000000632	RAD54B	99	86.029	Bos_taurus
ENSNLEG00000003062	-	75	40.253	WBGene00013792	Y116A8C.13	84	35.753	Caenorhabditis_elegans
ENSNLEG00000003062	-	99	96.143	ENSCJAG00000000080	-	100	96.143	Callithrix_jacchus
ENSNLEG00000003062	-	99	88.690	ENSCAFG00000009179	RAD54B	99	85.055	Canis_familiaris
ENSNLEG00000003062	-	99	88.552	ENSCAFG00020012084	-	99	84.945	Canis_lupus_dingo
ENSNLEG00000003062	-	99	88.414	ENSCHIG00000008230	-	99	85.479	Capra_hircus
ENSNLEG00000003062	-	99	91.172	ENSTSYG00000013234	-	99	89.989	Carlito_syrichta
ENSNLEG00000003062	-	100	88.446	ENSCPOG00000011643	-	100	84.413	Cavia_porcellus
ENSNLEG00000003062	-	99	96.006	ENSCCAG00000011754	-	100	96.006	Cebus_capucinus
ENSNLEG00000003062	-	99	98.209	ENSCATG00000030661	-	100	98.209	Cercocebus_atys
ENSNLEG00000003062	-	99	88.567	ENSCLAG00000010476	-	100	85.071	Chinchilla_lanigera
ENSNLEG00000003062	-	99	97.934	ENSCSAG00000012712	-	100	97.143	Chlorocebus_sabaeus
ENSNLEG00000003062	-	99	76.236	ENSCPBG00000003204	-	99	71.631	Chrysemys_picta_bellii
ENSNLEG00000003062	-	99	97.796	ENSCANG00000017939	-	100	97.796	Colobus_angolensis_palliatus
ENSNLEG00000003062	-	99	83.840	ENSCGRG00001020184	Rad54b	99	79.758	Cricetulus_griseus_chok1gshd
ENSNLEG00000003062	-	99	82.459	ENSCGRG00000016752	Rad54b	99	78.328	Cricetulus_griseus_crigri
ENSNLEG00000003062	-	99	56.849	ENSCSEG00000001601	rad54b	97	56.121	Cynoglossus_semilaevis
ENSNLEG00000003062	-	99	60.109	ENSCVAG00000009200	rad54b	99	55.882	Cyprinodon_variegatus
ENSNLEG00000003062	-	99	57.708	ENSDARG00000092134	rad54b	99	60.462	Danio_rerio
ENSNLEG00000003062	-	99	88.567	ENSDNOG00000015535	-	99	85.214	Dasypus_novemcinctus
ENSNLEG00000003062	-	99	89.227	ENSDORG00000002492	Rad54b	99	85.055	Dipodomys_ordii
ENSNLEG00000003062	-	83	87.914	ENSETEG00000010605	-	100	82.383	Echinops_telfairi
ENSNLEG00000003062	-	99	49.328	ENSEBUG00000009104	rad54b	99	47.021	Eptatretus_burgeri
ENSNLEG00000003062	-	99	88.000	ENSEASG00005004021	-	99	86.636	Equus_asinus_asinus
ENSNLEG00000003062	-	99	88.414	ENSECAG00000021949	-	99	87.143	Equus_caballus
ENSNLEG00000003062	-	87	81.132	ENSEEUG00000008056	-	83	81.132	Erinaceus_europaeus
ENSNLEG00000003062	-	99	59.041	ENSELUG00000009287	rad54b	99	54.083	Esox_lucius
ENSNLEG00000003062	-	99	90.470	ENSFCAG00000015513	-	99	90.470	Felis_catus
ENSNLEG00000003062	-	99	74.827	ENSFALG00000005467	-	99	68.696	Ficedula_albicollis
ENSNLEG00000003062	-	97	88.842	ENSFDAG00000020541	-	100	86.029	Fukomys_damarensis
ENSNLEG00000003062	-	99	57.337	ENSFHEG00000014382	rad54b	87	58.125	Fundulus_heteroclitus
ENSNLEG00000003062	-	99	54.743	ENSGMOG00000014774	rad54b	98	55.332	Gadus_morhua
ENSNLEG00000003062	-	100	73.800	ENSGALG00000043597	RAD54B	100	68.295	Gallus_gallus
ENSNLEG00000003062	-	100	58.209	ENSGAFG00000007901	rad54b	100	54.397	Gambusia_affinis
ENSNLEG00000003062	-	99	58.266	ENSGACG00000009128	rad54b	99	54.624	Gasterosteus_aculeatus
ENSNLEG00000003062	-	99	75.687	ENSGAGG00000018747	-	99	70.270	Gopherus_agassizii
ENSNLEG00000003062	-	99	99.172	ENSGGOG00000023516	-	99	98.240	Gorilla_gorilla
ENSNLEG00000003062	-	99	57.981	ENSHBUG00000016017	rad54b	99	52.991	Haplochromis_burtoni
ENSNLEG00000003062	-	99	87.397	ENSHGLG00000008263	RAD54B	99	84.809	Heterocephalus_glaber_female
ENSNLEG00000003062	-	99	86.277	ENSHGLG00100008108	-	99	84.039	Heterocephalus_glaber_male
ENSNLEG00000003062	-	99	56.071	ENSHCOG00000004764	rad54b	98	55.240	Hippocampus_comes
ENSNLEG00000003062	-	99	57.572	ENSIPUG00000018531	rad54b	99	52.046	Ictalurus_punctatus
ENSNLEG00000003062	-	99	88.611	ENSSTOG00000010791	-	99	84.879	Ictidomys_tridecemlineatus
ENSNLEG00000003062	-	99	86.050	ENSJJAG00000010314	Rad54b	99	82.398	Jaculus_jaculus
ENSNLEG00000003062	-	99	57.045	ENSKMAG00000004744	rad54b	99	52.459	Kryptolebias_marmoratus
ENSNLEG00000003062	-	99	69.444	ENSLACG00000000859	-	100	69.705	Latimeria_chalumnae
ENSNLEG00000003062	-	99	63.361	ENSLOCG00000010100	rad54b	94	63.899	Lepisosteus_oculatus
ENSNLEG00000003062	-	99	88.981	ENSLAFG00000015315	-	100	85.767	Loxodonta_africana
ENSNLEG00000003062	-	99	97.934	ENSMFAG00000031629	-	100	97.934	Macaca_fascicularis
ENSNLEG00000003062	-	99	97.934	ENSMMUG00000005659	-	100	97.473	Macaca_mulatta
ENSNLEG00000003062	-	99	97.934	ENSMNEG00000016408	-	100	97.363	Macaca_nemestrina
ENSNLEG00000003062	-	99	98.347	ENSMLEG00000006946	-	100	97.692	Mandrillus_leucophaeus
ENSNLEG00000003062	-	99	58.457	ENSMAMG00000012269	rad54b	99	55.146	Mastacembelus_armatus
ENSNLEG00000003062	-	99	57.981	ENSMZEG00005005281	rad54b	95	58.312	Maylandia_zebra
ENSNLEG00000003062	-	100	73.663	ENSMGAG00000012024	-	100	67.861	Meleagris_gallopavo
ENSNLEG00000003062	-	99	83.840	ENSMAUG00000013586	Rad54b	99	79.648	Mesocricetus_auratus
ENSNLEG00000003062	-	99	91.034	ENSMICG00000000754	-	99	84.928	Microcebus_murinus
ENSNLEG00000003062	-	100	81.070	ENSMOCG00000020035	Rad54b	100	77.571	Microtus_ochrogaster
ENSNLEG00000003062	-	99	57.671	ENSMMOG00000003394	rad54b	99	54.089	Mola_mola
ENSNLEG00000003062	-	99	79.668	ENSMODG00000007343	-	99	77.335	Monodelphis_domestica
ENSNLEG00000003062	-	89	58.915	ENSMALG00000001520	rad54b	99	58.915	Monopterus_albus
ENSNLEG00000003062	-	99	82.873	MGP_CAROLIEiJ_G0025810	Rad54b	99	78.658	Mus_caroli
ENSNLEG00000003062	-	99	82.573	ENSMUSG00000078773	Rad54b	99	78.414	Mus_musculus
ENSNLEG00000003062	-	99	83.402	MGP_PahariEiJ_G0023933	Rad54b	99	78.855	Mus_pahari
ENSNLEG00000003062	-	99	83.702	MGP_SPRETEiJ_G0026758	Rad54b	99	79.318	Mus_spretus
ENSNLEG00000003062	-	99	88.828	ENSMPUG00000008878	-	99	87.763	Mustela_putorius_furo
ENSNLEG00000003062	-	99	89.118	ENSMLUG00000008953	-	100	84.649	Myotis_lucifugus
ENSNLEG00000003062	-	99	87.517	ENSNGAG00000017537	Rad54b	99	83.807	Nannospalax_galili
ENSNLEG00000003062	-	99	58.003	ENSNBRG00000013394	rad54b	99	54.198	Neolamprologus_brichardi
ENSNLEG00000003062	-	78	79.503	ENSMEUG00000012426	-	82	72.951	Notamacropus_eugenii
ENSNLEG00000003062	-	93	88.791	ENSODEG00000002650	-	95	87.037	Octodon_degus
ENSNLEG00000003062	-	99	87.431	ENSODEG00000019564	-	99	84.378	Octodon_degus
ENSNLEG00000003062	-	99	58.140	ENSONIG00000006067	rad54b	99	54.329	Oreochromis_niloticus
ENSNLEG00000003062	-	99	77.517	ENSOANG00000011348	-	99	77.364	Ornithorhynchus_anatinus
ENSNLEG00000003062	-	100	89.546	ENSOCUG00000016478	-	100	85.197	Oryctolagus_cuniculus
ENSNLEG00000003062	-	99	59.673	ENSORLG00000008918	rad54b	99	61.669	Oryzias_latipes
ENSNLEG00000003062	-	89	61.824	ENSORLG00020012171	rad54b	99	61.824	Oryzias_latipes_hni
ENSNLEG00000003062	-	99	59.244	ENSORLG00015018536	rad54b	99	54.316	Oryzias_latipes_hsok
ENSNLEG00000003062	-	99	59.097	ENSOMEG00000004345	rad54b	99	59.226	Oryzias_melastigma
ENSNLEG00000003062	-	99	90.069	ENSOGAG00000007854	-	99	87.692	Otolemur_garnettii
ENSNLEG00000003062	-	99	88.138	ENSOARG00000007691	-	99	87.546	Ovis_aries
ENSNLEG00000003062	-	99	96.970	ENSPPAG00000029572	-	100	96.813	Pan_paniscus
ENSNLEG00000003062	-	99	90.608	ENSPPRG00000007571	-	99	90.608	Panthera_pardus
ENSNLEG00000003062	-	99	90.608	ENSPTIG00000012670	-	99	90.608	Panthera_tigris_altaica
ENSNLEG00000003062	-	99	99.174	ENSPTRG00000020427	-	100	99.174	Pan_troglodytes
ENSNLEG00000003062	-	99	98.347	ENSPANG00000019566	-	100	97.802	Papio_anubis
ENSNLEG00000003062	-	99	62.742	ENSPKIG00000014974	rad54b	99	57.923	Paramormyrops_kingsleyae
ENSNLEG00000003062	-	99	74.038	ENSPSIG00000002383	-	98	74.037	Pelodiscus_sinensis
ENSNLEG00000003062	-	99	83.149	ENSPEMG00000012133	Rad54b	99	80.088	Peromyscus_maniculatus_bairdii
ENSNLEG00000003062	-	99	57.938	ENSPMAG00000002916	rad54b	99	58.302	Petromyzon_marinus
ENSNLEG00000003062	-	99	80.303	ENSPCIG00000020151	-	94	78.040	Phascolarctos_cinereus
ENSNLEG00000003062	-	100	59.405	ENSPFOG00000023411	rad54b	100	54.219	Poecilia_formosa
ENSNLEG00000003062	-	100	59.405	ENSPLAG00000010430	rad54b	100	54.219	Poecilia_latipinna
ENSNLEG00000003062	-	100	59.837	ENSPMEG00000016873	rad54b	100	54.545	Poecilia_mexicana
ENSNLEG00000003062	-	100	59.350	ENSPREG00000018443	rad54b	100	55.206	Poecilia_reticulata
ENSNLEG00000003062	-	99	99.036	ENSPPYG00000018750	-	100	98.681	Pongo_abelii
ENSNLEG00000003062	-	99	91.448	ENSPCOG00000026845	-	99	91.448	Propithecus_coquereli
ENSNLEG00000003062	-	99	90.069	ENSPVAG00000000261	-	92	90.013	Pteropus_vampyrus
ENSNLEG00000003062	-	99	57.888	ENSPNYG00000018303	rad54b	96	58.407	Pundamilia_nyererei
ENSNLEG00000003062	-	99	57.938	ENSPNAG00000000295	rad54b	99	53.912	Pygocentrus_nattereri
ENSNLEG00000003062	-	99	80.525	ENSRNOG00000039949	Rad54b	99	75.881	Rattus_norvegicus
ENSNLEG00000003062	-	99	97.107	ENSRBIG00000020419	-	100	96.703	Rhinopithecus_bieti
ENSNLEG00000003062	-	99	97.107	ENSRROG00000039897	-	100	96.703	Rhinopithecus_roxellana
ENSNLEG00000003062	-	77	43.137	YBR073W	RDH54	80	37.970	Saccharomyces_cerevisiae
ENSNLEG00000003062	-	99	95.730	ENSSBOG00000028501	-	100	94.731	Saimiri_boliviensis_boliviensis
ENSNLEG00000003062	-	99	81.189	ENSSHAG00000017038	-	99	75.412	Sarcophilus_harrisii
ENSNLEG00000003062	-	78	65.439	ENSSFOG00015008483	rad54b	88	65.439	Scleropages_formosus
ENSNLEG00000003062	-	99	57.830	ENSSMAG00000018659	rad54b	99	53.651	Scophthalmus_maximus
ENSNLEG00000003062	-	98	58.735	ENSSDUG00000001122	rad54b	98	53.814	Seriola_dumerili
ENSNLEG00000003062	-	99	58.824	ENSSLDG00000013787	rad54b	99	53.782	Seriola_lalandi_dorsalis
ENSNLEG00000003062	-	100	73.937	ENSSPUG00000016497	-	100	68.559	Sphenodon_punctatus
ENSNLEG00000003062	-	99	58.345	ENSSPAG00000012800	rad54b	99	54.723	Stegastes_partitus
ENSNLEG00000003062	-	99	88.017	ENSSSCG00000006101	-	99	88.125	Sus_scrofa
ENSNLEG00000003062	-	99	74.069	ENSTGUG00000011880	-	99	67.857	Taeniopygia_guttata
ENSNLEG00000003062	-	100	58.266	ENSTRUG00000010015	rad54b	99	53.305	Takifugu_rubripes
ENSNLEG00000003062	-	99	84.392	ENSTTRG00000006312	-	99	83.498	Tursiops_truncatus
ENSNLEG00000003062	-	99	90.897	ENSUMAG00000016401	-	99	87.692	Ursus_maritimus
ENSNLEG00000003062	-	99	88.674	ENSVPAG00000003157	-	99	84.581	Vicugna_pacos
ENSNLEG00000003062	-	99	58.516	ENSXETG00000025924	rad54b	99	59.426	Xenopus_tropicalis
ENSNLEG00000003062	-	100	58.209	ENSXMAG00000013141	rad54b	100	54.506	Xiphophorus_maculatus