EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSNLEG00000003340 (Gene tree)
Gene ID: 100595141
Gene Symbol: USB1
Alias: C16orf57|FLJ13154|HVSL1|Mpn1
Full Name: U6 snRNA biogenesis phosphodiesterase 1
Gene Type: protein_coding
Species: Nomascus_leucogenys
Status: putative
Strand: Minus strand
Length: 18208 bases
Position: chr2:65419691-65437898
Accession: 100595141
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNLEP00000004042	HVSL	PF09749.9	4.4e-58	1	1
ENSNLEP00000038673	HVSL	PF09749.9	2.4e-46	1	2
ENSNLEP00000038673	HVSL	PF09749.9	2.4e-46	2	2
ENSNLEP00000028998	HVSL	PF09749.9	6.7e-29	1	1
ENSNLEP00000047021	HVSL	PF09749.9	1.1e-28	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNLET00000058866	USB1-203	477	-	ENSNLEP00000028998	158 (aa)	-	A0A2I3GCI5
ENSNLET00000004240	USB1-201	861	XM_012505037	ENSNLEP00000004042	250 (aa)	XP_012360491	G1QSX4
ENSNLET00000054693	USB1-204	561	-	ENSNLEP00000047021	186 (aa)	-	A0A2I3HU66
ENSNLET00000059214	USB1-202	696	-	ENSNLEP00000038673	232 (aa)	-	A0A2I3H4T3

Gene Model

Click here to download ENSNLEG00000003340's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSNLEG00000003340's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNLEG00000003340	USB1	100	98.000	ENSG00000103005	USB1	100	97.312	Homo_sapiens
ENSNLEG00000003340	USB1	96	46.694	ENSAPOG00000011942	usb1	74	52.885	Acanthochromis_polyacanthus
ENSNLEG00000003340	USB1	100	83.071	ENSAMEG00000017205	USB1	94	82.677	Ailuropoda_melanoleuca
ENSNLEG00000003340	USB1	84	53.589	ENSACIG00000012234	usb1	77	53.589	Amphilophus_citrinellus
ENSNLEG00000003340	USB1	93	50.862	ENSAOCG00000014831	usb1	73	54.808	Amphiprion_ocellaris
ENSNLEG00000003340	USB1	93	51.293	ENSAPEG00000000296	usb1	73	55.288	Amphiprion_percula
ENSNLEG00000003340	USB1	93	50.431	ENSATEG00000009348	usb1	75	53.302	Anabas_testudineus
ENSNLEG00000003340	USB1	84	69.811	ENSAPLG00000002756	USB1	93	69.668	Anas_platyrhynchos
ENSNLEG00000003340	USB1	83	63.810	ENSACAG00000015481	USB1	92	63.810	Anolis_carolinensis
ENSNLEG00000003340	USB1	100	96.000	ENSANAG00000035640	USB1	100	92.405	Aotus_nancymaae
ENSNLEG00000003340	USB1	92	52.174	ENSACLG00000020586	usb1	75	54.028	Astatotilapia_calliptera
ENSNLEG00000003340	USB1	84	50.239	ENSAMXG00000040146	usb1	69	50.239	Astyanax_mexicanus
ENSNLEG00000003340	USB1	100	83.600	ENSBTAG00000015758	USB1	94	83.600	Bos_taurus
ENSNLEG00000003340	USB1	100	96.800	ENSCJAG00000011733	USB1	100	92.405	Callithrix_jacchus
ENSNLEG00000003340	USB1	100	81.008	ENSCAFG00000008556	USB1	69	79.457	Canis_familiaris
ENSNLEG00000003340	USB1	100	82.072	ENSCAFG00020009263	USB1	94	78.764	Canis_lupus_dingo
ENSNLEG00000003340	USB1	100	83.200	ENSCHIG00000024290	USB1	94	83.200	Capra_hircus
ENSNLEG00000003340	USB1	100	90.400	ENSTSYG00000006997	USB1	100	87.975	Carlito_syrichta
ENSNLEG00000003340	USB1	74	85.470	ENSCAPG00000009057	USB1	92	70.352	Cavia_aperea
ENSNLEG00000003340	USB1	100	81.818	ENSCPOG00000014325	USB1	94	81.818	Cavia_porcellus
ENSNLEG00000003340	USB1	100	96.400	ENSCCAG00000022132	USB1	100	93.711	Cebus_capucinus
ENSNLEG00000003340	USB1	100	96.800	ENSCATG00000032174	USB1	100	93.671	Cercocebus_atys
ENSNLEG00000003340	USB1	64	86.335	ENSCLAG00000007363	USB1	91	86.335	Chinchilla_lanigera
ENSNLEG00000003340	USB1	100	97.600	ENSCSAG00000004783	USB1	94	97.600	Chlorocebus_sabaeus
ENSNLEG00000003340	USB1	92	65.217	ENSCPBG00000026943	USB1	95	60.837	Chrysemys_picta_bellii
ENSNLEG00000003340	USB1	71	32.124	ENSCING00000011490	-	69	32.124	Ciona_intestinalis
ENSNLEG00000003340	USB1	77	31.156	ENSCSAVG00000000894	-	71	31.313	Ciona_savignyi
ENSNLEG00000003340	USB1	100	96.800	ENSCANG00000037135	USB1	99	92.157	Colobus_angolensis_palliatus
ENSNLEG00000003340	USB1	100	83.794	ENSCGRG00001011243	USB1	94	83.399	Cricetulus_griseus_chok1gshd
ENSNLEG00000003340	USB1	100	83.794	ENSCGRG00000013252	USB1	94	83.399	Cricetulus_griseus_crigri
ENSNLEG00000003340	USB1	98	47.104	ENSCSEG00000013881	usb1	79	49.083	Cynoglossus_semilaevis
ENSNLEG00000003340	USB1	81	50.242	ENSCVAG00000009252	usb1	88	50.725	Cyprinodon_variegatus
ENSNLEG00000003340	USB1	90	47.768	ENSDARG00000003841	usb1	81	47.768	Danio_rerio
ENSNLEG00000003340	USB1	100	83.200	ENSDORG00000001888	Usb1	94	83.200	Dipodomys_ordii
ENSNLEG00000003340	USB1	70	41.667	FBgn0037713	CG16790	67	41.667	Drosophila_melanogaster
ENSNLEG00000003340	USB1	95	75.000	ENSETEG00000019682	USB1	94	69.048	Echinops_telfairi
ENSNLEG00000003340	USB1	79	52.284	ENSEBUG00000005889	usb1	69	52.284	Eptatretus_burgeri
ENSNLEG00000003340	USB1	100	85.600	ENSEASG00005005484	USB1	94	85.600	Equus_asinus_asinus
ENSNLEG00000003340	USB1	100	86.800	ENSECAG00000019493	USB1	86	86.800	Equus_caballus
ENSNLEG00000003340	USB1	64	77.640	ENSEEUG00000000154	USB1	94	58.800	Erinaceus_europaeus
ENSNLEG00000003340	USB1	94	45.532	ENSELUG00000010974	usb1	82	46.087	Esox_lucius
ENSNLEG00000003340	USB1	100	85.317	ENSFCAG00000002693	USB1	100	83.125	Felis_catus
ENSNLEG00000003340	USB1	100	59.846	ENSFALG00000006876	USB1	94	61.328	Ficedula_albicollis
ENSNLEG00000003340	USB1	100	84.127	ENSFDAG00000010052	USB1	94	84.127	Fukomys_damarensis
ENSNLEG00000003340	USB1	91	47.755	ENSFHEG00000012334	usb1	78	53.061	Fundulus_heteroclitus
ENSNLEG00000003340	USB1	83	50.962	ENSGMOG00000004228	usb1	93	50.962	Gadus_morhua
ENSNLEG00000003340	USB1	83	66.507	ENSGALG00000035604	USB1	94	62.550	Gallus_gallus
ENSNLEG00000003340	USB1	96	48.450	ENSGAFG00000021890	usb1	75	53.110	Gambusia_affinis
ENSNLEG00000003340	USB1	83	53.140	ENSGACG00000003257	usb1	74	53.140	Gasterosteus_aculeatus
ENSNLEG00000003340	USB1	100	61.923	ENSGAGG00000022572	USB1	95	61.240	Gopherus_agassizii
ENSNLEG00000003340	USB1	100	98.925	ENSGGOG00000017147	USB1	100	98.925	Gorilla_gorilla
ENSNLEG00000003340	USB1	92	52.174	ENSHBUG00000009823	usb1	75	54.245	Haplochromis_burtoni
ENSNLEG00000003340	USB1	100	85.317	ENSHGLG00000016078	USB1	92	85.317	Heterocephalus_glaber_female
ENSNLEG00000003340	USB1	100	85.317	ENSHGLG00100005562	USB1	92	85.317	Heterocephalus_glaber_male
ENSNLEG00000003340	USB1	77	57.812	ENSHCOG00000015633	usb1	76	57.576	Hippocampus_comes
ENSNLEG00000003340	USB1	84	53.589	ENSIPUG00000008601	usb1	73	53.589	Ictalurus_punctatus
ENSNLEG00000003340	USB1	100	83.721	ENSSTOG00000007548	USB1	95	82.171	Ictidomys_tridecemlineatus
ENSNLEG00000003340	USB1	100	84.921	ENSJJAG00000021859	Usb1	94	84.921	Jaculus_jaculus
ENSNLEG00000003340	USB1	92	50.431	ENSKMAG00000007200	usb1	71	54.950	Kryptolebias_marmoratus
ENSNLEG00000003340	USB1	80	52.261	ENSLBEG00000008452	usb1	64	53.158	Labrus_bergylta
ENSNLEG00000003340	USB1	92	54.936	ENSLACG00000000105	USB1	72	60.287	Latimeria_chalumnae
ENSNLEG00000003340	USB1	95	52.720	ENSLOCG00000000465	usb1	79	53.778	Lepisosteus_oculatus
ENSNLEG00000003340	USB1	100	63.529	ENSLAFG00000002267	USB1	94	63.922	Loxodonta_africana
ENSNLEG00000003340	USB1	100	97.200	ENSMFAG00000003926	USB1	100	94.304	Macaca_fascicularis
ENSNLEG00000003340	USB1	100	97.200	ENSMMUG00000022669	USB1	100	93.671	Macaca_mulatta
ENSNLEG00000003340	USB1	100	97.200	ENSMNEG00000042487	USB1	100	94.304	Macaca_nemestrina
ENSNLEG00000003340	USB1	100	97.200	ENSMLEG00000028756	USB1	100	94.304	Mandrillus_leucophaeus
ENSNLEG00000003340	USB1	96	48.837	ENSMAMG00000015092	usb1	77	52.804	Mastacembelus_armatus
ENSNLEG00000003340	USB1	92	52.174	ENSMZEG00005010008	usb1	75	54.028	Maylandia_zebra
ENSNLEG00000003340	USB1	100	83.730	ENSMAUG00000007832	Usb1	94	83.730	Mesocricetus_auratus
ENSNLEG00000003340	USB1	99	90.361	ENSMICG00000004900	USB1	100	88.608	Microcebus_murinus
ENSNLEG00000003340	USB1	100	82.937	ENSMOCG00000022647	Usb1	94	82.937	Microtus_ochrogaster
ENSNLEG00000003340	USB1	84	53.110	ENSMMOG00000000490	usb1	81	53.110	Mola_mola
ENSNLEG00000003340	USB1	100	67.984	ENSMODG00000014067	USB1	94	66.403	Monodelphis_domestica
ENSNLEG00000003340	USB1	93	50.000	ENSMALG00000005930	usb1	73	53.846	Monopterus_albus
ENSNLEG00000003340	USB1	100	79.762	MGP_CAROLIEiJ_G0031421	Usb1	100	83.186	Mus_caroli
ENSNLEG00000003340	USB1	100	80.159	ENSMUSG00000031792	Usb1	100	84.071	Mus_musculus
ENSNLEG00000003340	USB1	100	80.556	MGP_PahariEiJ_G0023019	Usb1	100	84.615	Mus_pahari
ENSNLEG00000003340	USB1	100	79.365	MGP_SPRETEiJ_G0032540	Usb1	94	79.365	Mus_spretus
ENSNLEG00000003340	USB1	100	81.102	ENSMPUG00000004684	USB1	91	80.315	Mustela_putorius_furo
ENSNLEG00000003340	USB1	86	87.500	ENSMLUG00000007400	USB1	94	87.500	Myotis_lucifugus
ENSNLEG00000003340	USB1	100	82.677	ENSNGAG00000009703	Usb1	94	82.677	Nannospalax_galili
ENSNLEG00000003340	USB1	91	48.430	ENSNBRG00000008747	usb1	90	54.645	Neolamprologus_brichardi
ENSNLEG00000003340	USB1	94	58.974	ENSMEUG00000003328	-	100	60.000	Notamacropus_eugenii
ENSNLEG00000003340	USB1	74	79.487	ENSOPRG00000011803	USB1	58	82.090	Ochotona_princeps
ENSNLEG00000003340	USB1	100	81.349	ENSODEG00000016214	USB1	94	81.349	Octodon_degus
ENSNLEG00000003340	USB1	96	48.669	ENSONIG00000011063	usb1	76	53.774	Oreochromis_niloticus
ENSNLEG00000003340	USB1	87	71.689	ENSOANG00000012118	USB1	90	71.689	Ornithorhynchus_anatinus
ENSNLEG00000003340	USB1	91	45.652	ENSORLG00000012479	usb1	76	51.675	Oryzias_latipes
ENSNLEG00000003340	USB1	92	49.130	ENSORLG00020018671	usb1	92	48.207	Oryzias_latipes_hni
ENSNLEG00000003340	USB1	84	52.153	ENSORLG00015009679	usb1	77	52.153	Oryzias_latipes_hsok
ENSNLEG00000003340	USB1	80	53.234	ENSOMEG00000012930	usb1	73	52.709	Oryzias_melastigma
ENSNLEG00000003340	USB1	100	87.931	ENSOGAG00000003273	USB1	94	88.312	Otolemur_garnettii
ENSNLEG00000003340	USB1	95	81.513	ENSOARG00000001107	USB1	87	83.772	Ovis_aries
ENSNLEG00000003340	USB1	100	98.400	ENSPPAG00000042137	USB1	100	98.387	Pan_paniscus
ENSNLEG00000003340	USB1	100	85.317	ENSPPRG00000024797	USB1	100	83.125	Panthera_pardus
ENSNLEG00000003340	USB1	100	85.317	ENSPTIG00000007506	USB1	100	83.750	Panthera_tigris_altaica
ENSNLEG00000003340	USB1	100	98.387	ENSPTRG00000008172	USB1	100	98.387	Pan_troglodytes
ENSNLEG00000003340	USB1	100	97.200	ENSPANG00000025138	USB1	100	94.304	Papio_anubis
ENSNLEG00000003340	USB1	96	50.820	ENSPKIG00000015109	usb1	71	54.502	Paramormyrops_kingsleyae
ENSNLEG00000003340	USB1	84	52.133	ENSPSIG00000004305	USB1	93	52.133	Pelodiscus_sinensis
ENSNLEG00000003340	USB1	83	52.657	ENSPMGG00000017725	usb1	79	52.657	Periophthalmus_magnuspinnatus
ENSNLEG00000003340	USB1	100	81.323	ENSPEMG00000016183	Usb1	94	78.988	Peromyscus_maniculatus_bairdii
ENSNLEG00000003340	USB1	88	50.450	ENSPMAG00000000462	usb1	94	50.450	Petromyzon_marinus
ENSNLEG00000003340	USB1	96	48.638	ENSPFOG00000011130	usb1	75	52.632	Poecilia_formosa
ENSNLEG00000003340	USB1	96	48.638	ENSPLAG00000009820	usb1	75	52.632	Poecilia_latipinna
ENSNLEG00000003340	USB1	96	48.062	ENSPMEG00000006402	usb1	75	52.632	Poecilia_mexicana
ENSNLEG00000003340	USB1	91	47.755	ENSPREG00000001047	usb1	79	53.571	Poecilia_reticulata
ENSNLEG00000003340	USB1	100	95.219	ENSPPYG00000007401	USB1	99	95.219	Pongo_abelii
ENSNLEG00000003340	USB1	99	91.165	ENSPCOG00000022612	USB1	100	89.873	Propithecus_coquereli
ENSNLEG00000003340	USB1	100	80.400	ENSPVAG00000004613	USB1	94	80.400	Pteropus_vampyrus
ENSNLEG00000003340	USB1	92	52.174	ENSPNYG00000022262	usb1	75	54.245	Pundamilia_nyererei
ENSNLEG00000003340	USB1	98	47.154	ENSPNAG00000011736	usb1	71	51.675	Pygocentrus_nattereri
ENSNLEG00000003340	USB1	100	82.540	ENSRNOG00000013216	Usb1	94	82.540	Rattus_norvegicus
ENSNLEG00000003340	USB1	100	97.414	ENSRBIG00000044466	USB1	100	94.304	Rhinopithecus_bieti
ENSNLEG00000003340	USB1	100	97.600	ENSRROG00000029211	USB1	100	94.304	Rhinopithecus_roxellana
ENSNLEG00000003340	USB1	100	95.200	ENSSBOG00000029362	USB1	100	91.139	Saimiri_boliviensis_boliviensis
ENSNLEG00000003340	USB1	82	72.059	ENSSHAG00000006993	USB1	88	70.270	Sarcophilus_harrisii
ENSNLEG00000003340	USB1	89	54.911	ENSSFOG00015023663	usb1	69	55.909	Scleropages_formosus
ENSNLEG00000003340	USB1	96	49.425	ENSSMAG00000015834	usb1	80	50.840	Scophthalmus_maximus
ENSNLEG00000003340	USB1	82	56.098	ENSSDUG00000002949	usb1	76	56.098	Seriola_dumerili
ENSNLEG00000003340	USB1	83	55.556	ENSSLDG00000014174	usb1	74	55.556	Seriola_lalandi_dorsalis
ENSNLEG00000003340	USB1	80	68.844	ENSSPUG00000006741	USB1	93	68.844	Sphenodon_punctatus
ENSNLEG00000003340	USB1	83	52.885	ENSSPAG00000007484	usb1	73	52.885	Stegastes_partitus
ENSNLEG00000003340	USB1	100	83.465	ENSSSCG00000002807	USB1	94	81.890	Sus_scrofa
ENSNLEG00000003340	USB1	79	69.543	ENSTGUG00000004792	USB1	81	68.116	Taeniopygia_guttata
ENSNLEG00000003340	USB1	98	48.617	ENSTRUG00000021069	usb1	79	51.643	Takifugu_rubripes
ENSNLEG00000003340	USB1	98	44.000	ENSTNIG00000000626	usb1	77	46.411	Tetraodon_nigroviridis
ENSNLEG00000003340	USB1	87	59.447	ENSTBEG00000001507	USB1	94	59.447	Tupaia_belangeri
ENSNLEG00000003340	USB1	100	83.071	ENSUAMG00000016823	USB1	94	83.071	Ursus_americanus
ENSNLEG00000003340	USB1	80	87.437	ENSUMAG00000021369	USB1	93	87.437	Ursus_maritimus
ENSNLEG00000003340	USB1	95	51.333	ENSVPAG00000009834	-	59	87.500	Vicugna_pacos
ENSNLEG00000003340	USB1	100	81.890	ENSVVUG00000023700	USB1	88	84.581	Vulpes_vulpes
ENSNLEG00000003340	USB1	81	54.902	ENSXETG00000013795	usb1	89	53.153	Xenopus_tropicalis
ENSNLEG00000003340	USB1	91	48.918	ENSXMAG00000024687	usb1	64	54.315	Xiphophorus_maculatus