EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSNLEG00000004726 (Gene tree)
Gene ID: 100597889
Gene Symbol: XRN1
Alias: SEP1
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Nomascus_leucogenys
Status: putative
Strand: Plus strand
Length: 143989 bases
Position: chr8:8532327-8676315
Accession: 100597889
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNLEP00000024186	XRN_N	PF03159.18	5.4e-96	1	1
ENSNLEP00000005801	XRN_N	PF03159.18	7e-96	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNLET00000032555	XRN1-202	9919	XM_012508602	ENSNLEP00000024186	1694 (aa)	XP_012364056	M3ZBU9
ENSNLET00000006105	XRN1-201	10127	XM_003265333	ENSNLEP00000005801	1706 (aa)	XP_003265381	G1QXY0

Gene Model

Click here to download ENSNLEG00000004726's gene model file

Pathways

Pathway ID	Pathway Name	Source
nle03008	Ribosome biogenesis in eukaryotes	KEGG
nle03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSNLEG00000004726's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNLEG00000004726	XRN1	100	98.229	ENSG00000114127	XRN1	100	100.000	Homo_sapiens
ENSNLEG00000004726	XRN1	100	61.373	ENSAPOG00000000622	xrn1	93	76.546	Acanthochromis_polyacanthus
ENSNLEG00000004726	XRN1	100	91.700	ENSAMEG00000012538	XRN1	100	91.700	Ailuropoda_melanoleuca
ENSNLEG00000004726	XRN1	95	72.254	ENSACIG00000001057	xrn1	94	72.417	Amphilophus_citrinellus
ENSNLEG00000004726	XRN1	100	60.410	ENSAOCG00000014097	xrn1	95	69.679	Amphiprion_ocellaris
ENSNLEG00000004726	XRN1	100	60.269	ENSAPEG00000006620	xrn1	98	62.417	Amphiprion_percula
ENSNLEG00000004726	XRN1	96	69.720	ENSATEG00000009752	xrn1	100	69.636	Anabas_testudineus
ENSNLEG00000004726	XRN1	99	76.249	ENSAPLG00000004905	XRN1	100	76.132	Anas_platyrhynchos
ENSNLEG00000004726	XRN1	100	72.748	ENSACAG00000004985	XRN1	100	72.523	Anolis_carolinensis
ENSNLEG00000004726	XRN1	100	96.812	ENSANAG00000029013	XRN1	100	96.812	Aotus_nancymaae
ENSNLEG00000004726	XRN1	100	60.604	ENSACLG00000004806	xrn1	96	62.100	Astatotilapia_calliptera
ENSNLEG00000004726	XRN1	99	60.436	ENSAMXG00000019370	xrn1	96	93.269	Astyanax_mexicanus
ENSNLEG00000004726	XRN1	100	92.267	ENSBTAG00000011524	XRN1	100	92.091	Bos_taurus
ENSNLEG00000004726	XRN1	71	38.935	WBGene00012730	xrn-1	80	39.313	Caenorhabditis_elegans
ENSNLEG00000004726	XRN1	100	96.753	ENSCJAG00000001872	XRN1	100	96.753	Callithrix_jacchus
ENSNLEG00000004726	XRN1	100	93.142	ENSCAFG00000007783	XRN1	100	93.142	Canis_familiaris
ENSNLEG00000004726	XRN1	100	92.085	ENSCAFG00020009120	XRN1	99	94.006	Canis_lupus_dingo
ENSNLEG00000004726	XRN1	99	90.457	ENSCHIG00000019192	XRN1	99	90.283	Capra_hircus
ENSNLEG00000004726	XRN1	100	94.454	ENSTSYG00000002705	XRN1	100	94.454	Carlito_syrichta
ENSNLEG00000004726	XRN1	55	77.114	ENSCAPG00000004604	-	99	77.114	Cavia_aperea
ENSNLEG00000004726	XRN1	100	97.285	ENSCCAG00000034800	XRN1	99	99.208	Cebus_capucinus
ENSNLEG00000004726	XRN1	100	98.170	ENSCATG00000041794	XRN1	100	98.170	Cercocebus_atys
ENSNLEG00000004726	XRN1	100	88.171	ENSCLAG00000001451	XRN1	99	96.672	Chinchilla_lanigera
ENSNLEG00000004726	XRN1	100	98.067	ENSCSAG00000011265	XRN1	100	98.067	Chlorocebus_sabaeus
ENSNLEG00000004726	XRN1	62	98.701	ENSCHOG00000013961	-	62	98.701	Choloepus_hoffmanni
ENSNLEG00000004726	XRN1	71	45.207	ENSCSAVG00000008584	-	98	44.874	Ciona_savignyi
ENSNLEG00000004726	XRN1	100	97.993	ENSCANG00000037495	XRN1	99	99.049	Colobus_angolensis_palliatus
ENSNLEG00000004726	XRN1	100	87.926	ENSCGRG00001019411	Xrn1	99	96.513	Cricetulus_griseus_chok1gshd
ENSNLEG00000004726	XRN1	100	87.926	ENSCGRG00000012464	Xrn1	99	96.513	Cricetulus_griseus_crigri
ENSNLEG00000004726	XRN1	100	55.826	ENSCSEG00000021285	xrn1	94	95.192	Cynoglossus_semilaevis
ENSNLEG00000004726	XRN1	67	67.281	ENSCVAG00000013089	xrn1	99	71.693	Cyprinodon_variegatus
ENSNLEG00000004726	XRN1	99	63.014	ENSDARG00000091652	xrn1	98	80.169	Danio_rerio
ENSNLEG00000004726	XRN1	100	87.153	ENSDORG00000013833	Xrn1	100	87.095	Dipodomys_ordii
ENSNLEG00000004726	XRN1	75	39.938	FBgn0020261	pcm	76	39.846	Drosophila_melanogaster
ENSNLEG00000004726	XRN1	86	99.099	ENSETEG00000003978	XRN1	88	98.387	Echinops_telfairi
ENSNLEG00000004726	XRN1	100	93.146	ENSEASG00005002687	XRN1	100	95.673	Equus_asinus_asinus
ENSNLEG00000004726	XRN1	100	93.146	ENSECAG00000008301	XRN1	100	93.146	Equus_caballus
ENSNLEG00000004726	XRN1	92	83.089	ENSEEUG00000011323	XRN1	92	83.089	Erinaceus_europaeus
ENSNLEG00000004726	XRN1	100	61.626	ENSELUG00000000169	xrn1	94	63.631	Esox_lucius
ENSNLEG00000004726	XRN1	100	89.440	ENSFCAG00000027589	XRN1	99	96.484	Felis_catus
ENSNLEG00000004726	XRN1	100	74.846	ENSFALG00000007021	XRN1	100	74.733	Ficedula_albicollis
ENSNLEG00000004726	XRN1	100	89.152	ENSFDAG00000020494	XRN1	99	96.197	Fukomys_damarensis
ENSNLEG00000004726	XRN1	84	68.117	ENSGMOG00000006396	xrn1	80	68.117	Gadus_morhua
ENSNLEG00000004726	XRN1	100	75.014	ENSGALG00000002706	XRN1	100	74.958	Gallus_gallus
ENSNLEG00000004726	XRN1	100	59.737	ENSGACG00000014328	xrn1	96	61.333	Gasterosteus_aculeatus
ENSNLEG00000004726	XRN1	95	77.999	ENSGAGG00000017535	XRN1	99	77.818	Gopherus_agassizii
ENSNLEG00000004726	XRN1	100	98.524	ENSGGOG00000008047	XRN1	100	98.524	Gorilla_gorilla
ENSNLEG00000004726	XRN1	100	60.731	ENSHBUG00000005908	xrn1	98	73.101	Haplochromis_burtoni
ENSNLEG00000004726	XRN1	100	90.311	ENSHGLG00000014476	XRN1	99	97.306	Heterocephalus_glaber_female
ENSNLEG00000004726	XRN1	100	90.311	ENSHGLG00100015130	XRN1	99	97.306	Heterocephalus_glaber_male
ENSNLEG00000004726	XRN1	96	70.697	ENSHCOG00000014062	xrn1	95	69.609	Hippocampus_comes
ENSNLEG00000004726	XRN1	99	62.486	ENSIPUG00000015229	xrn1	96	64.384	Ictalurus_punctatus
ENSNLEG00000004726	XRN1	100	91.686	ENSSTOG00000013552	XRN1	99	97.781	Ictidomys_tridecemlineatus
ENSNLEG00000004726	XRN1	98	87.002	ENSJJAG00000010863	Xrn1	99	94.194	Jaculus_jaculus
ENSNLEG00000004726	XRN1	94	62.082	ENSKMAG00000021356	xrn1	94	76.160	Kryptolebias_marmoratus
ENSNLEG00000004726	XRN1	100	60.456	ENSLBEG00000018656	xrn1	97	96.117	Labrus_bergylta
ENSNLEG00000004726	XRN1	100	70.046	ENSLACG00000009020	XRN1	97	70.973	Latimeria_chalumnae
ENSNLEG00000004726	XRN1	100	65.632	ENSLOCG00000007944	xrn1	98	65.826	Lepisosteus_oculatus
ENSNLEG00000004726	XRN1	63	96.165	ENSLAFG00000015426	XRN1	100	96.165	Loxodonta_africana
ENSNLEG00000004726	XRN1	100	98.170	ENSMFAG00000032599	XRN1	100	98.170	Macaca_fascicularis
ENSNLEG00000004726	XRN1	100	98.229	ENSMMUG00000014038	XRN1	100	98.229	Macaca_mulatta
ENSNLEG00000004726	XRN1	100	97.993	ENSMNEG00000034217	XRN1	100	97.993	Macaca_nemestrina
ENSNLEG00000004726	XRN1	94	70.955	ENSMAMG00000013219	xrn1	94	77.526	Mastacembelus_armatus
ENSNLEG00000004726	XRN1	100	60.308	ENSMZEG00005015099	xrn1	96	61.981	Maylandia_zebra
ENSNLEG00000004726	XRN1	99	74.884	ENSMGAG00000006333	XRN1	100	74.767	Meleagris_gallopavo
ENSNLEG00000004726	XRN1	100	94.287	ENSMICG00000048948	XRN1	96	100.000	Microcebus_murinus
ENSNLEG00000004726	XRN1	58	95.404	ENSMOCG00000008665	Xrn1	99	95.404	Microtus_ochrogaster
ENSNLEG00000004726	XRN1	100	82.370	ENSMODG00000021236	XRN1	100	82.078	Monodelphis_domestica
ENSNLEG00000004726	XRN1	100	57.746	ENSMALG00000004098	xrn1	100	57.458	Monopterus_albus
ENSNLEG00000004726	XRN1	96	95.577	MGP_CAROLIEiJ_G0032535	Xrn1	100	100.000	Mus_caroli
ENSNLEG00000004726	XRN1	100	86.713	ENSMUSG00000032410	Xrn1	100	100.000	Mus_musculus
ENSNLEG00000004726	XRN1	100	86.424	MGP_PahariEiJ_G0015404	Xrn1	100	100.000	Mus_pahari
ENSNLEG00000004726	XRN1	100	86.655	MGP_SPRETEiJ_G0033678	Xrn1	100	100.000	Mus_spretus
ENSNLEG00000004726	XRN1	100	93.673	ENSMPUG00000012040	XRN1	100	93.673	Mustela_putorius_furo
ENSNLEG00000004726	XRN1	100	89.550	ENSMLUG00000016885	XRN1	100	89.434	Myotis_lucifugus
ENSNLEG00000004726	XRN1	58	91.759	ENSNGAG00000023964	Xrn1	99	92.051	Nannospalax_galili
ENSNLEG00000004726	XRN1	80	98.969	ENSMEUG00000014473	-	80	99.029	Notamacropus_eugenii
ENSNLEG00000004726	XRN1	79	84.800	ENSOPRG00000007337	-	78	84.800	Ochotona_princeps
ENSNLEG00000004726	XRN1	100	61.345	ENSONIG00000016673	xrn1	99	64.645	Oreochromis_niloticus
ENSNLEG00000004726	XRN1	92	77.448	ENSOANG00000006735	XRN1	100	77.069	Ornithorhynchus_anatinus
ENSNLEG00000004726	XRN1	100	90.258	ENSOCUG00000001861	XRN1	100	90.029	Oryctolagus_cuniculus
ENSNLEG00000004726	XRN1	100	61.007	ENSORLG00000013005	xrn1	96	61.396	Oryzias_latipes
ENSNLEG00000004726	XRN1	100	60.988	ENSORLG00020005559	xrn1	100	61.070	Oryzias_latipes_hni
ENSNLEG00000004726	XRN1	100	61.057	ENSORLG00015022523	xrn1	96	62.241	Oryzias_latipes_hsok
ENSNLEG00000004726	XRN1	92	72.779	ENSOMEG00000015397	xrn1	99	72.698	Oryzias_melastigma
ENSNLEG00000004726	XRN1	100	91.564	ENSOGAG00000000170	XRN1	100	91.564	Otolemur_garnettii
ENSNLEG00000004726	XRN1	99	92.786	ENSOARG00000006343	XRN1	99	92.610	Ovis_aries
ENSNLEG00000004726	XRN1	100	98.288	ENSPPAG00000010180	XRN1	100	98.288	Pan_paniscus
ENSNLEG00000004726	XRN1	100	93.746	ENSPPRG00000007125	XRN1	100	93.746	Panthera_pardus
ENSNLEG00000004726	XRN1	100	93.805	ENSPTIG00000021081	XRN1	100	93.805	Panthera_tigris_altaica
ENSNLEG00000004726	XRN1	100	98.288	ENSPTRG00000015482	XRN1	100	98.288	Pan_troglodytes
ENSNLEG00000004726	XRN1	100	98.111	ENSPANG00000010638	XRN1	100	98.111	Papio_anubis
ENSNLEG00000004726	XRN1	100	76.756	ENSPSIG00000018050	XRN1	100	76.699	Pelodiscus_sinensis
ENSNLEG00000004726	XRN1	57	77.551	ENSPMGG00000002648	xrn1	98	78.650	Periophthalmus_magnuspinnatus
ENSNLEG00000004726	XRN1	58	96.038	ENSPEMG00000020610	Xrn1	99	96.038	Peromyscus_maniculatus_bairdii
ENSNLEG00000004726	XRN1	65	50.549	ENSPMAG00000002975	xrn1	91	78.448	Petromyzon_marinus
ENSNLEG00000004726	XRN1	100	81.702	ENSPCIG00000028735	XRN1	99	90.106	Phascolarctos_cinereus
ENSNLEG00000004726	XRN1	91	64.213	ENSPFOG00000013932	xrn1	99	64.593	Poecilia_formosa
ENSNLEG00000004726	XRN1	91	63.015	ENSPLAG00000021653	xrn1	99	63.850	Poecilia_latipinna
ENSNLEG00000004726	XRN1	89	63.842	ENSPMEG00000003076	xrn1	95	64.355	Poecilia_mexicana
ENSNLEG00000004726	XRN1	100	60.672	ENSPREG00000021147	xrn1	100	60.419	Poecilia_reticulata
ENSNLEG00000004726	XRN1	100	98.417	ENSPPYG00000014172	XRN1	100	98.417	Pongo_abelii
ENSNLEG00000004726	XRN1	90	81.983	ENSPCAG00000005638	XRN1	100	81.983	Procavia_capensis
ENSNLEG00000004726	XRN1	100	94.926	ENSPCOG00000013089	XRN1	99	97.306	Propithecus_coquereli
ENSNLEG00000004726	XRN1	96	92.461	ENSPVAG00000016265	XRN1	96	92.461	Pteropus_vampyrus
ENSNLEG00000004726	XRN1	100	60.751	ENSPNYG00000010570	xrn1	95	62.682	Pundamilia_nyererei
ENSNLEG00000004726	XRN1	99	60.657	ENSPNAG00000023531	xrn1	96	62.048	Pygocentrus_nattereri
ENSNLEG00000004726	XRN1	100	87.522	ENSRNOG00000042951	Xrn1	100	87.406	Rattus_norvegicus
ENSNLEG00000004726	XRN1	100	97.364	ENSRBIG00000041227	XRN1	100	97.364	Rhinopithecus_bieti
ENSNLEG00000004726	XRN1	67	54.496	YGL173C	XRN1	81	34.540	Saccharomyces_cerevisiae
ENSNLEG00000004726	XRN1	100	96.635	ENSSBOG00000029561	XRN1	100	96.635	Saimiri_boliviensis_boliviensis
ENSNLEG00000004726	XRN1	99	81.490	ENSSHAG00000016207	XRN1	100	81.183	Sarcophilus_harrisii
ENSNLEG00000004726	XRN1	100	61.166	ENSSFOG00015024211	xrn1	97	62.959	Scleropages_formosus
ENSNLEG00000004726	XRN1	96	69.525	ENSSMAG00000016534	xrn1	97	69.525	Scophthalmus_maximus
ENSNLEG00000004726	XRN1	90	72.091	ENSSDUG00000010306	xrn1	91	71.938	Seriola_dumerili
ENSNLEG00000004726	XRN1	96	70.661	ENSSLDG00000021543	xrn1	97	70.520	Seriola_lalandi_dorsalis
ENSNLEG00000004726	XRN1	68	85.227	ENSSARG00000007741	-	83	85.227	Sorex_araneus
ENSNLEG00000004726	XRN1	100	76.959	ENSTGUG00000008498	XRN1	100	76.843	Taeniopygia_guttata
ENSNLEG00000004726	XRN1	100	58.820	ENSTRUG00000004895	xrn1	96	75.783	Takifugu_rubripes
ENSNLEG00000004726	XRN1	96	68.606	ENSTNIG00000017615	xrn1	96	60.545	Tetraodon_nigroviridis
ENSNLEG00000004726	XRN1	84	97.844	ENSTBEG00000003256	XRN1	89	87.879	Tupaia_belangeri
ENSNLEG00000004726	XRN1	100	88.746	ENSTTRG00000012914	XRN1	100	88.511	Tursiops_truncatus
ENSNLEG00000004726	XRN1	100	92.564	ENSUAMG00000001608	XRN1	99	94.000	Ursus_americanus
ENSNLEG00000004726	XRN1	100	94.496	ENSUMAG00000013625	XRN1	100	94.496	Ursus_maritimus
ENSNLEG00000004726	XRN1	100	90.914	ENSVPAG00000004690	XRN1	100	90.914	Vicugna_pacos
ENSNLEG00000004726	XRN1	100	93.966	ENSVVUG00000024461	XRN1	99	97.464	Vulpes_vulpes
ENSNLEG00000004726	XRN1	100	69.084	ENSXETG00000000619	xrn1	99	88.802	Xenopus_tropicalis
ENSNLEG00000004726	XRN1	100	60.964	ENSXCOG00000007917	xrn1	95	62.477	Xiphophorus_couchianus
ENSNLEG00000004726	XRN1	92	71.720	ENSXMAG00000018320	xrn1	92	71.801	Xiphophorus_maculatus