EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSNLEG00000005026 (Gene tree)
Gene ID: 105737518
Gene Symbol: TRIM39
Alias: RNF23
Full Name: tripartite motif containing 39
Gene Type: protein_coding
Species: Nomascus_leucogenys
Status: putative
Strand: Plus strand
Length: 19853 bases
Position: chr1a:75135388-75155240
Accession: 100591555
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNLEP00000035743	Rpr2	PF04032.16	1.5e-19	1	1
ENSNLEP00000006109	Rpr2	PF04032.16	1.9e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNLET00000041600	TRIM39-202	3722	XM_003272027	ENSNLEP00000036833	488 (aa)	XP_003272075	A0A2I3GZN4
ENSNLET00000060050	TRIM39-204	549	XM_003272028	ENSNLEP00000035743	154 (aa)	XP_003272076	A0A2I3GWK1
ENSNLET00000006424	TRIM39-203	1512	-	ENSNLEP00000006109	503 (aa)	-	G1QYT8
ENSNLET00000006427	TRIM39-201	3812	XM_012503137	ENSNLEP00000006112	518 (aa)	XP_012358591	G1QYU1

Gene Model

Click here to download ENSNLEG00000005026's gene model file

Pathways

Pathway ID	Pathway Name	Source
nle03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSNLEG00000005026's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNLEG00000005026	TRIM39	100	98.012	ENSANAG00000032075	TRIM39	100	98.012	Aotus_nancymaae
ENSNLEG00000005026	TRIM39	100	97.416	ENSCJAG00000020681	TRIM39	100	97.416	Callithrix_jacchus
ENSNLEG00000005026	TRIM39	100	97.813	ENSCCAG00000036784	TRIM39	100	97.813	Cebus_capucinus
ENSNLEG00000005026	TRIM39	100	98.608	ENSCATG00000044044	TRIM39	100	98.608	Cercocebus_atys
ENSNLEG00000005026	TRIM39	100	99.404	ENSGGOG00000016403	TRIM39	100	99.404	Gorilla_gorilla
ENSNLEG00000005026	TRIM39	100	98.807	ENSMFAG00000046182	TRIM39	100	98.807	Macaca_fascicularis
ENSNLEG00000005026	TRIM39	100	98.807	ENSMMUG00000011682	RPP21	100	98.807	Macaca_mulatta
ENSNLEG00000005026	TRIM39	100	98.608	ENSMNEG00000034999	TRIM39	100	98.608	Macaca_nemestrina
ENSNLEG00000005026	TRIM39	100	98.807	ENSMLEG00000034263	TRIM39	100	98.807	Mandrillus_leucophaeus
ENSNLEG00000005026	TRIM39	100	99.602	ENSPPAG00000040674	TRIM39	100	99.602	Pan_paniscus
ENSNLEG00000005026	TRIM39	100	99.602	ENSPTRG00000017923	TRIM39	100	99.602	Pan_troglodytes
ENSNLEG00000005026	TRIM39	100	98.608	ENSPANG00000000655	TRIM39	100	98.608	Papio_anubis
ENSNLEG00000005026	TRIM39	100	99.006	ENSRBIG00000040889	TRIM39	100	99.006	Rhinopithecus_bieti
ENSNLEG00000005026	TRIM39	100	99.006	ENSRROG00000036496	TRIM39	100	99.006	Rhinopithecus_roxellana