EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSNLEG00000005342 (Gene tree)
Gene ID: 100605699
Gene Symbol: APOBEC1
Alias: APOBEC-1|BEDP|CDAR1|HEPR
Full Name: apolipoprotein B mRNA editing enzyme catalytic subunit 1
Gene Type: protein_coding
Species: Nomascus_leucogenys
Status: putative
Strand: Plus strand
Length: 12251 bases
Position: chr23:27059978-27072228
Accession: 100605699
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNLEP00000006471	APOBEC_N	PF08210.11	1.3e-27	1	1
ENSNLEP00000006471	APOBEC_C	PF05240.14	8e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNLET00000006799	APOBEC1-201	890	XM_003273794	ENSNLEP00000006471	236 (aa)	XP_003273842	G1QZV0

Gene Model

Click here to download ENSNLEG00000005342's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSNLEG00000005342's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSNLEG00000005342	APOBEC1	53	33.858	ENSNLEG00000015218	-	60	33.858

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNLEG00000005342	APOBEC1	100	96.186	ENSG00000111701	APOBEC1	100	96.186	Homo_sapiens
ENSNLEG00000005342	APOBEC1	98	80.952	ENSAMEG00000007098	APOBEC1	98	80.952	Ailuropoda_melanoleuca
ENSNLEG00000005342	APOBEC1	72	39.766	ENSACAG00000028578	-	93	39.766	Anolis_carolinensis
ENSNLEG00000005342	APOBEC1	100	89.407	ENSANAG00000027743	APOBEC1	95	89.407	Aotus_nancymaae
ENSNLEG00000005342	APOBEC1	100	73.305	ENSBTAG00000014683	APOBEC1	100	73.305	Bos_taurus
ENSNLEG00000005342	APOBEC1	94	87.783	ENSCJAG00000005398	APOBEC1	100	87.783	Callithrix_jacchus
ENSNLEG00000005342	APOBEC1	100	78.814	ENSCAFG00000013901	APOBEC1	100	78.814	Canis_familiaris
ENSNLEG00000005342	APOBEC1	96	78.319	ENSCAFG00020003511	APOBEC1	95	78.319	Canis_lupus_dingo
ENSNLEG00000005342	APOBEC1	98	73.160	ENSCHIG00000011898	APOBEC1	96	73.160	Capra_hircus
ENSNLEG00000005342	APOBEC1	60	84.397	ENSTSYG00000029141	APOBEC1	100	84.397	Carlito_syrichta
ENSNLEG00000005342	APOBEC1	91	69.302	ENSCAPG00000015882	-	100	69.302	Cavia_aperea
ENSNLEG00000005342	APOBEC1	99	68.085	ENSCPOG00000033068	APOBEC1	99	68.085	Cavia_porcellus
ENSNLEG00000005342	APOBEC1	100	91.102	ENSCCAG00000022258	APOBEC1	100	91.102	Cebus_capucinus
ENSNLEG00000005342	APOBEC1	100	95.763	ENSCATG00000021613	APOBEC1	95	95.763	Cercocebus_atys
ENSNLEG00000005342	APOBEC1	97	70.870	ENSCLAG00000014645	APOBEC1	100	70.870	Chinchilla_lanigera
ENSNLEG00000005342	APOBEC1	81	94.241	ENSCSAG00000009817	APOBEC1	100	94.241	Chlorocebus_sabaeus
ENSNLEG00000005342	APOBEC1	79	47.340	ENSCPBG00000014328	-	82	47.340	Chrysemys_picta_bellii
ENSNLEG00000005342	APOBEC1	83	49.490	ENSCPBG00000014329	-	54	49.490	Chrysemys_picta_bellii
ENSNLEG00000005342	APOBEC1	79	47.340	ENSCPBG00000014327	-	81	38.967	Chrysemys_picta_bellii
ENSNLEG00000005342	APOBEC1	78	45.989	ENSCPBG00000014335	-	76	45.989	Chrysemys_picta_bellii
ENSNLEG00000005342	APOBEC1	94	42.222	ENSCPBG00000014331	-	90	42.222	Chrysemys_picta_bellii
ENSNLEG00000005342	APOBEC1	77	45.455	ENSCPBG00000017398	-	82	45.455	Chrysemys_picta_bellii
ENSNLEG00000005342	APOBEC1	97	95.217	ENSCANG00000038359	APOBEC1	100	95.217	Colobus_angolensis_palliatus
ENSNLEG00000005342	APOBEC1	97	70.742	ENSCGRG00001011130	Apobec1	100	70.742	Cricetulus_griseus_chok1gshd
ENSNLEG00000005342	APOBEC1	97	70.742	ENSCGRG00000008644	Apobec1	100	70.742	Cricetulus_griseus_crigri
ENSNLEG00000005342	APOBEC1	100	79.661	ENSDNOG00000010926	APOBEC1	100	79.661	Dasypus_novemcinctus
ENSNLEG00000005342	APOBEC1	90	65.888	ENSDORG00000023717	Apobec1	100	65.888	Dipodomys_ordii
ENSNLEG00000005342	APOBEC1	99	78.298	ENSETEG00000004867	APOBEC1	99	78.298	Echinops_telfairi
ENSNLEG00000005342	APOBEC1	98	82.684	ENSEASG00005015951	APOBEC1	97	82.684	Equus_asinus_asinus
ENSNLEG00000005342	APOBEC1	81	83.246	ENSECAG00000017163	APOBEC1	100	83.246	Equus_caballus
ENSNLEG00000005342	APOBEC1	93	65.158	ENSEEUG00000009112	-	98	65.158	Erinaceus_europaeus
ENSNLEG00000005342	APOBEC1	86	53.431	ENSEEUG00000007530	-	97	53.431	Erinaceus_europaeus
ENSNLEG00000005342	APOBEC1	100	81.780	ENSFCAG00000009350	APOBEC1	100	81.780	Felis_catus
ENSNLEG00000005342	APOBEC1	60	47.222	ENSFALG00000007257	-	70	47.222	Ficedula_albicollis
ENSNLEG00000005342	APOBEC1	88	61.836	ENSFDAG00000018470	APOBEC1	99	61.836	Fukomys_damarensis
ENSNLEG00000005342	APOBEC1	92	45.662	ENSGAGG00000011837	-	88	51.667	Gopherus_agassizii
ENSNLEG00000005342	APOBEC1	77	45.902	ENSGAGG00000021744	-	71	45.902	Gopherus_agassizii
ENSNLEG00000005342	APOBEC1	72	42.373	ENSGAGG00000021745	-	64	42.373	Gopherus_agassizii
ENSNLEG00000005342	APOBEC1	79	46.842	ENSGAGG00000006624	-	66	46.842	Gopherus_agassizii
ENSNLEG00000005342	APOBEC1	68	50.617	ENSGAGG00000004947	-	76	54.918	Gopherus_agassizii
ENSNLEG00000005342	APOBEC1	99	66.809	ENSHGLG00000001495	APOBEC1	99	66.809	Heterocephalus_glaber_female
ENSNLEG00000005342	APOBEC1	99	65.957	ENSHGLG00100002187	APOBEC1	99	65.957	Heterocephalus_glaber_male
ENSNLEG00000005342	APOBEC1	91	65.421	ENSSTOG00000021971	APOBEC1	100	79.592	Ictidomys_tridecemlineatus
ENSNLEG00000005342	APOBEC1	97	75.546	ENSJJAG00000022108	Apobec1	100	75.546	Jaculus_jaculus
ENSNLEG00000005342	APOBEC1	94	77.578	ENSLAFG00000030837	APOBEC1	100	77.578	Loxodonta_africana
ENSNLEG00000005342	APOBEC1	100	95.763	ENSMFAG00000000277	APOBEC1	100	95.763	Macaca_fascicularis
ENSNLEG00000005342	APOBEC1	100	95.339	ENSMNEG00000029670	APOBEC1	100	95.339	Macaca_nemestrina
ENSNLEG00000005342	APOBEC1	100	95.763	ENSMLEG00000036301	APOBEC1	100	95.763	Mandrillus_leucophaeus
ENSNLEG00000005342	APOBEC1	92	70.833	ENSMAUG00000022167	Apobec1	97	70.833	Mesocricetus_auratus
ENSNLEG00000005342	APOBEC1	100	83.898	ENSMICG00000043645	APOBEC1	100	83.898	Microcebus_murinus
ENSNLEG00000005342	APOBEC1	100	67.373	ENSMODG00000018004	APOBEC1	100	67.373	Monodelphis_domestica
ENSNLEG00000005342	APOBEC1	97	70.175	ENSMUSG00000040613	Apobec1	99	70.175	Mus_musculus
ENSNLEG00000005342	APOBEC1	97	67.982	MGP_PahariEiJ_G0022580	-	99	67.982	Mus_pahari
ENSNLEG00000005342	APOBEC1	97	70.175	MGP_SPRETEiJ_G0029857	Apobec1	99	70.175	Mus_spretus
ENSNLEG00000005342	APOBEC1	100	78.390	ENSMPUG00000017532	APOBEC1	100	78.390	Mustela_putorius_furo
ENSNLEG00000005342	APOBEC1	97	71.179	ENSNGAG00000022607	Apobec1	100	71.179	Nannospalax_galili
ENSNLEG00000005342	APOBEC1	100	65.254	ENSMEUG00000013406	APOBEC1	100	65.254	Notamacropus_eugenii
ENSNLEG00000005342	APOBEC1	77	62.983	ENSOPRG00000009508	-	100	62.983	Ochotona_princeps
ENSNLEG00000005342	APOBEC1	100	77.542	ENSOCUG00000025736	APOBEC1	88	77.542	Oryctolagus_cuniculus
ENSNLEG00000005342	APOBEC1	98	81.818	ENSOGAG00000026415	APOBEC1	98	81.818	Otolemur_garnettii
ENSNLEG00000005342	APOBEC1	100	72.881	ENSOARG00000002072	APOBEC1	99	72.881	Ovis_aries
ENSNLEG00000005342	APOBEC1	98	87.879	ENSPPAG00000027657	APOBEC1	98	87.879	Pan_paniscus
ENSNLEG00000005342	APOBEC1	100	81.356	ENSPPRG00000012182	APOBEC1	100	81.356	Panthera_pardus
ENSNLEG00000005342	APOBEC1	100	81.356	ENSPTIG00000020280	APOBEC1	100	81.356	Panthera_tigris_altaica
ENSNLEG00000005342	APOBEC1	100	96.610	ENSPTRG00000004614	APOBEC1	100	96.610	Pan_troglodytes
ENSNLEG00000005342	APOBEC1	100	95.763	ENSPANG00000021027	APOBEC1	100	95.763	Papio_anubis
ENSNLEG00000005342	APOBEC1	53	55.238	ENSPSIG00000012791	-	66	55.238	Pelodiscus_sinensis
ENSNLEG00000005342	APOBEC1	99	42.979	ENSPSIG00000012568	-	99	42.979	Pelodiscus_sinensis
ENSNLEG00000005342	APOBEC1	97	69.432	ENSPEMG00000023841	Apobec1	100	69.432	Peromyscus_maniculatus_bairdii
ENSNLEG00000005342	APOBEC1	100	68.644	ENSPCIG00000023973	APOBEC1	100	68.644	Phascolarctos_cinereus
ENSNLEG00000005342	APOBEC1	100	96.186	ENSPPYG00000004228	APOBEC1	95	96.186	Pongo_abelii
ENSNLEG00000005342	APOBEC1	79	80.214	ENSPCAG00000008733	APOBEC1	100	80.214	Procavia_capensis
ENSNLEG00000005342	APOBEC1	100	82.203	ENSPCOG00000013957	APOBEC1	100	82.203	Propithecus_coquereli
ENSNLEG00000005342	APOBEC1	100	65.254	ENSPVAG00000010709	APOBEC1	100	65.254	Pteropus_vampyrus
ENSNLEG00000005342	APOBEC1	97	68.860	ENSRNOG00000015411	Apobec1	99	68.860	Rattus_norvegicus
ENSNLEG00000005342	APOBEC1	100	94.915	ENSRBIG00000031161	APOBEC1	100	94.915	Rhinopithecus_bieti
ENSNLEG00000005342	APOBEC1	100	94.492	ENSRROG00000033576	APOBEC1	100	94.492	Rhinopithecus_roxellana
ENSNLEG00000005342	APOBEC1	73	90.751	ENSSBOG00000030587	APOBEC1	98	90.751	Saimiri_boliviensis_boliviensis
ENSNLEG00000005342	APOBEC1	96	69.604	ENSSHAG00000008925	APOBEC1	99	69.604	Sarcophilus_harrisii
ENSNLEG00000005342	APOBEC1	73	66.279	ENSSARG00000000032	-	100	66.279	Sorex_araneus
ENSNLEG00000005342	APOBEC1	56	70.229	ENSSARG00000011972	-	99	70.229	Sorex_araneus
ENSNLEG00000005342	APOBEC1	86	41.346	ENSSPUG00000009044	-	79	41.346	Sphenodon_punctatus
ENSNLEG00000005342	APOBEC1	100	78.390	ENSSSCG00000000668	APOBEC1	100	78.390	Sus_scrofa
ENSNLEG00000005342	APOBEC1	61	49.306	ENSTGUG00000013118	-	99	49.306	Taeniopygia_guttata
ENSNLEG00000005342	APOBEC1	94	76.471	ENSTBEG00000010043	APOBEC1	94	76.471	Tupaia_belangeri
ENSNLEG00000005342	APOBEC1	79	76.471	ENSTTRG00000014015	APOBEC1	100	76.471	Tursiops_truncatus
ENSNLEG00000005342	APOBEC1	98	80.519	ENSUAMG00000011636	APOBEC1	95	80.519	Ursus_americanus
ENSNLEG00000005342	APOBEC1	98	80.519	ENSUMAG00000016552	APOBEC1	95	80.519	Ursus_maritimus
ENSNLEG00000005342	APOBEC1	100	75.424	ENSVPAG00000001343	APOBEC1	100	75.424	Vicugna_pacos
ENSNLEG00000005342	APOBEC1	100	79.661	ENSVVUG00000010522	APOBEC1	100	79.661	Vulpes_vulpes