EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSNLEG00000005835 (Gene tree)
Gene ID: 100594777
Gene Symbol: -
Alias: -
Full Name: small nuclear ribonucleoprotein polypeptide F
Gene Type: protein_coding
Species: Nomascus_leucogenys
Status: putative
Strand: Minus strand
Length: 45658 bases
Position: chr10:9576733-9622390
Accession: 100594777
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNLEP00000007065	LSM	PF01423.22	3.7e-21	1	1
ENSNLEP00000035197	LSM	PF01423.22	9.4e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNLET00000007415	-	764	XM_003259501	ENSNLEP00000007065	86 (aa)	XP_003259549	G1R1J3
ENSNLET00000060272	-	381	-	ENSNLEP00000035197	126 (aa)	-	A0A2I3GVD7

Gene Model

Click here to download ENSNLEG00000005835's gene model file

Pathways

Pathway ID	Pathway Name	Source
nle03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSNLEG00000005835's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSNLEG00000005835	-	70	37.363	ENSNLEG00000010737	SRSF3	96	37.363
ENSNLEG00000005835	-	62	43.038	ENSNLEG00000033616	GEMIN6	58	43.038
ENSNLEG00000005835	-	77	51.515	ENSNLEG00000005584	LSM6	83	51.515
ENSNLEG00000005835	-	56	40.278	ENSNLEG00000005499	-	57	40.278

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNLEG00000005835	-	50	97.674	ENSCHIG00000017139	-	88	88.333	Capra_hircus
ENSNLEG00000005835	-	100	100.000	ENSCATG00000003132	-	100	100.000	Cercocebus_atys
ENSNLEG00000005835	-	50	100.000	ENSCPBG00000001948	-	94	91.837	Chrysemys_picta_bellii
ENSNLEG00000005835	-	100	100.000	ENSCANG00000006758	-	100	100.000	Colobus_angolensis_palliatus
ENSNLEG00000005835	-	51	90.909	ENSFCAG00000032773	-	70	90.909	Felis_catus
ENSNLEG00000005835	-	91	58.974	ENSFCAG00000037511	-	87	61.644	Felis_catus
ENSNLEG00000005835	-	57	87.755	ENSGAGG00000014834	-	75	97.727	Gopherus_agassizii
ENSNLEG00000005835	-	100	100.000	ENSMFAG00000035517	-	100	100.000	Macaca_fascicularis
ENSNLEG00000005835	-	100	100.000	ENSMMUG00000009302	-	100	100.000	Macaca_mulatta
ENSNLEG00000005835	-	100	100.000	ENSMNEG00000030762	-	100	100.000	Macaca_nemestrina
ENSNLEG00000005835	-	100	100.000	ENSMLEG00000033558	-	100	100.000	Mandrillus_leucophaeus
ENSNLEG00000005835	-	50	97.674	ENSOGAG00000014320	-	100	96.226	Otolemur_garnettii
ENSNLEG00000005835	-	100	100.000	ENSPPAG00000003072	-	100	100.000	Pan_paniscus
ENSNLEG00000005835	-	73	76.190	ENSPPRG00000020147	-	100	76.190	Panthera_pardus
ENSNLEG00000005835	-	100	100.000	ENSPTRG00000005317	-	100	96.850	Pan_troglodytes
ENSNLEG00000005835	-	99	98.824	ENSPANG00000014632	-	97	98.824	Papio_anubis
ENSNLEG00000005835	-	100	100.000	ENSPCIG00000017205	-	100	100.000	Phascolarctos_cinereus
ENSNLEG00000005835	-	53	93.478	ENSPFOG00000020883	-	100	93.478	Poecilia_formosa
ENSNLEG00000005835	-	100	100.000	ENSRBIG00000028811	-	100	100.000	Rhinopithecus_bieti
ENSNLEG00000005835	-	100	100.000	ENSRROG00000031057	-	100	100.000	Rhinopithecus_roxellana
ENSNLEG00000005835	-	64	78.182	ENSVVUG00000003155	-	73	78.182	Vulpes_vulpes