EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSNLEG00000006062 (Gene tree)
Gene ID: 100582659
Gene Symbol: UPF1
Alias: HUPF1|KIAA0221|NORF1|RENT1|pNORF1|smg-2
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Nomascus_leucogenys
Status: putative
Strand: Minus strand
Length: 22516 bases
Position: chr10:55752919-55775434
Accession: 100582659
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNLEP00000041591	UPF1_Zn_bind	PF09416.10	5e-48	1	1
ENSNLEP00000041591	ResIII	PF04851.15	3e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNLET00000007715	UPF1-201	4774	-	ENSNLEP00000007351	373 (aa)	-	G1R2C9
ENSNLET00000042956	UPF1-202	2991	XM_012509509	ENSNLEP00000041591	996 (aa)	XP_012364963	A0A2I3HDQ5

Gene Model

Click here to download ENSNLEG00000006062's gene model file

Pathways

Pathway ID	Pathway Name	Source
nle03013	RNA transport	KEGG
nle03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSNLEG00000006062's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNLEG00000006062	UPF1	100	94.202	ENSG00000005007	UPF1	93	94.202	Homo_sapiens
ENSNLEG00000006062	UPF1	99	88.034	ENSAPOG00000010916	-	95	88.129	Acanthochromis_polyacanthus
ENSNLEG00000006062	UPF1	99	86.648	ENSAPOG00000023773	upf1	95	86.879	Acanthochromis_polyacanthus
ENSNLEG00000006062	UPF1	99	94.006	ENSAMEG00000011474	UPF1	93	94.006	Ailuropoda_melanoleuca
ENSNLEG00000006062	UPF1	99	86.377	ENSACIG00000019949	upf1	95	86.837	Amphilophus_citrinellus
ENSNLEG00000006062	UPF1	98	88.127	ENSACIG00000010985	-	100	88.224	Amphilophus_citrinellus
ENSNLEG00000006062	UPF1	99	88.034	ENSAOCG00000006352	-	100	85.977	Amphiprion_ocellaris
ENSNLEG00000006062	UPF1	99	86.108	ENSAOCG00000018519	upf1	95	86.879	Amphiprion_ocellaris
ENSNLEG00000006062	UPF1	99	88.034	ENSAPEG00000006292	-	100	85.977	Amphiprion_percula
ENSNLEG00000006062	UPF1	99	86.108	ENSAPEG00000016344	upf1	95	86.879	Amphiprion_percula
ENSNLEG00000006062	UPF1	99	85.313	ENSATEG00000017867	upf1	95	86.249	Anabas_testudineus
ENSNLEG00000006062	UPF1	99	88.034	ENSATEG00000016606	-	95	88.129	Anabas_testudineus
ENSNLEG00000006062	UPF1	99	92.388	ENSAPLG00000009175	UPF1	99	92.388	Anas_platyrhynchos
ENSNLEG00000006062	UPF1	100	92.871	ENSANAG00000024107	UPF1	95	92.871	Aotus_nancymaae
ENSNLEG00000006062	UPF1	99	87.928	ENSACLG00000022630	-	95	87.928	Astatotilapia_calliptera
ENSNLEG00000006062	UPF1	99	86.187	ENSACLG00000007181	upf1	95	86.648	Astatotilapia_calliptera
ENSNLEG00000006062	UPF1	99	88.414	ENSAMXG00000042187	upf1	95	88.984	Astyanax_mexicanus
ENSNLEG00000006062	UPF1	99	94.006	ENSBTAG00000020922	UPF1	93	94.006	Bos_taurus
ENSNLEG00000006062	UPF1	85	50.598	WBGene00004880	smg-2	94	47.495	Caenorhabditis_elegans
ENSNLEG00000006062	UPF1	100	94.202	ENSCJAG00000019627	UPF1	93	94.202	Callithrix_jacchus
ENSNLEG00000006062	UPF1	99	94.006	ENSCAFG00000014578	UPF1	93	94.006	Canis_familiaris
ENSNLEG00000006062	UPF1	99	92.959	ENSCAFG00020012347	UPF1	93	92.959	Canis_lupus_dingo
ENSNLEG00000006062	UPF1	99	94.006	ENSCHIG00000011018	UPF1	93	94.006	Capra_hircus
ENSNLEG00000006062	UPF1	100	93.916	ENSTSYG00000008877	UPF1	98	93.916	Carlito_syrichta
ENSNLEG00000006062	UPF1	100	92.966	ENSCAPG00000005758	UPF1	95	92.966	Cavia_aperea
ENSNLEG00000006062	UPF1	99	92.939	ENSCPOG00000025463	UPF1	94	92.939	Cavia_porcellus
ENSNLEG00000006062	UPF1	100	94.202	ENSCCAG00000032175	UPF1	94	94.202	Cebus_capucinus
ENSNLEG00000006062	UPF1	99	94.179	ENSCATG00000040306	UPF1	98	94.179	Cercocebus_atys
ENSNLEG00000006062	UPF1	100	93.821	ENSCLAG00000004037	UPF1	100	93.821	Chinchilla_lanigera
ENSNLEG00000006062	UPF1	100	93.156	ENSCSAG00000005276	UPF1	93	93.156	Chlorocebus_sabaeus
ENSNLEG00000006062	UPF1	99	91.651	ENSCPBG00000012513	UPF1	94	91.651	Chrysemys_picta_bellii
ENSNLEG00000006062	UPF1	72	75.610	ENSCING00000021399	-	91	75.610	Ciona_intestinalis
ENSNLEG00000006062	UPF1	99	68.461	ENSCSAVG00000006533	-	94	68.461	Ciona_savignyi
ENSNLEG00000006062	UPF1	100	94.202	ENSCANG00000029819	UPF1	97	94.202	Colobus_angolensis_palliatus
ENSNLEG00000006062	UPF1	100	92.205	ENSCGRG00001021067	Upf1	94	92.205	Cricetulus_griseus_chok1gshd
ENSNLEG00000006062	UPF1	100	93.251	ENSCGRG00000013480	Upf1	98	93.251	Cricetulus_griseus_crigri
ENSNLEG00000006062	UPF1	99	88.023	ENSCSEG00000016159	-	95	88.023	Cynoglossus_semilaevis
ENSNLEG00000006062	UPF1	99	81.387	ENSCSEG00000017239	upf1	94	81.697	Cynoglossus_semilaevis
ENSNLEG00000006062	UPF1	99	87.844	ENSCVAG00000010561	upf1	95	87.844	Cyprinodon_variegatus
ENSNLEG00000006062	UPF1	99	88.224	ENSDARG00000016302	upf1	95	88.794	Danio_rerio
ENSNLEG00000006062	UPF1	100	90.978	ENSDORG00000009984	Upf1	95	90.978	Dipodomys_ordii
ENSNLEG00000006062	UPF1	83	68.492	FBgn0030354	Upf1	80	64.918	Drosophila_melanogaster
ENSNLEG00000006062	UPF1	50	78.545	ENSEBUG00000010069	upf1	89	78.545	Eptatretus_burgeri
ENSNLEG00000006062	UPF1	99	92.864	ENSEASG00005006549	UPF1	93	92.864	Equus_asinus_asinus
ENSNLEG00000006062	UPF1	99	92.864	ENSECAG00000010639	UPF1	93	92.864	Equus_caballus
ENSNLEG00000006062	UPF1	99	87.252	ENSELUG00000012916	-	95	87.264	Esox_lucius
ENSNLEG00000006062	UPF1	99	85.728	ENSELUG00000020917	upf1	95	86.011	Esox_lucius
ENSNLEG00000006062	UPF1	99	93.911	ENSFCAG00000009757	UPF1	93	93.911	Felis_catus
ENSNLEG00000006062	UPF1	99	91.564	ENSFALG00000009312	UPF1	96	91.564	Ficedula_albicollis
ENSNLEG00000006062	UPF1	100	93.726	ENSFDAG00000014816	UPF1	100	93.726	Fukomys_damarensis
ENSNLEG00000006062	UPF1	99	83.804	ENSFHEG00000006428	upf1	94	83.804	Fundulus_heteroclitus
ENSNLEG00000006062	UPF1	91	93.648	ENSFHEG00000016276	-	96	93.829	Fundulus_heteroclitus
ENSNLEG00000006062	UPF1	99	87.654	ENSGMOG00000007541	upf1	95	88.224	Gadus_morhua
ENSNLEG00000006062	UPF1	99	92.103	ENSGALG00000003220	UPF1	93	92.103	Gallus_gallus
ENSNLEG00000006062	UPF1	99	87.738	ENSGAFG00000004831	upf1	95	87.738	Gambusia_affinis
ENSNLEG00000006062	UPF1	78	85.369	ENSGAFG00000015443	-	96	83.560	Gambusia_affinis
ENSNLEG00000006062	UPF1	99	92.008	ENSGAGG00000022217	UPF1	94	92.008	Gopherus_agassizii
ENSNLEG00000006062	UPF1	100	93.156	ENSGGOG00000002608	UPF1	99	93.156	Gorilla_gorilla
ENSNLEG00000006062	UPF1	85	86.207	ENSHBUG00000014694	upf1	90	86.207	Haplochromis_burtoni
ENSNLEG00000006062	UPF1	85	100.000	ENSHBUG00000008939	upf1	89	100.000	Haplochromis_burtoni
ENSNLEG00000006062	UPF1	100	93.536	ENSHGLG00000010900	UPF1	93	93.536	Heterocephalus_glaber_female
ENSNLEG00000006062	UPF1	100	91.825	ENSHGLG00100005904	UPF1	97	91.825	Heterocephalus_glaber_male
ENSNLEG00000006062	UPF1	99	86.882	ENSHCOG00000008918	upf1	100	86.986	Hippocampus_comes
ENSNLEG00000006062	UPF1	99	88.889	ENSIPUG00000005108	UPF1	95	89.364	Ictalurus_punctatus
ENSNLEG00000006062	UPF1	100	93.821	ENSSTOG00000009196	UPF1	94	93.821	Ictidomys_tridecemlineatus
ENSNLEG00000006062	UPF1	100	93.061	ENSJJAG00000023151	Upf1	94	93.061	Jaculus_jaculus
ENSNLEG00000006062	UPF1	99	88.129	ENSKMAG00000004962	upf1	95	88.129	Kryptolebias_marmoratus
ENSNLEG00000006062	UPF1	99	84.911	ENSLBEG00000014862	upf1	95	86.223	Labrus_bergylta
ENSNLEG00000006062	UPF1	99	87.939	ENSLBEG00000027848	-	95	88.034	Labrus_bergylta
ENSNLEG00000006062	UPF1	70	97.274	ENSLACG00000008482	UPF1	100	97.274	Latimeria_chalumnae
ENSNLEG00000006062	UPF1	99	90.399	ENSLOCG00000002072	upf1	95	90.494	Lepisosteus_oculatus
ENSNLEG00000006062	UPF1	99	93.435	ENSLAFG00000014963	UPF1	93	93.435	Loxodonta_africana
ENSNLEG00000006062	UPF1	100	94.202	ENSMFAG00000037748	UPF1	94	94.202	Macaca_fascicularis
ENSNLEG00000006062	UPF1	100	94.202	ENSMMUG00000023286	UPF1	94	94.202	Macaca_mulatta
ENSNLEG00000006062	UPF1	100	94.202	ENSMNEG00000000046	UPF1	94	94.202	Macaca_nemestrina
ENSNLEG00000006062	UPF1	100	94.202	ENSMLEG00000028404	UPF1	100	94.202	Mandrillus_leucophaeus
ENSNLEG00000006062	UPF1	99	85.126	ENSMAMG00000006229	upf1	95	86.249	Mastacembelus_armatus
ENSNLEG00000006062	UPF1	99	87.369	ENSMAMG00000006231	-	95	87.939	Mastacembelus_armatus
ENSNLEG00000006062	UPF1	99	87.928	ENSMZEG00005016386	-	95	87.928	Maylandia_zebra
ENSNLEG00000006062	UPF1	99	85.140	ENSMZEG00005003489	upf1	95	86.466	Maylandia_zebra
ENSNLEG00000006062	UPF1	99	91.920	ENSMGAG00000004745	UPF1	100	91.920	Meleagris_gallopavo
ENSNLEG00000006062	UPF1	100	93.251	ENSMAUG00000011398	Upf1	95	93.251	Mesocricetus_auratus
ENSNLEG00000006062	UPF1	100	92.871	ENSMICG00000001659	UPF1	93	92.871	Microcebus_murinus
ENSNLEG00000006062	UPF1	100	93.251	ENSMOCG00000005699	Upf1	94	93.251	Microtus_ochrogaster
ENSNLEG00000006062	UPF1	99	85.755	ENSMMOG00000007537	-	99	85.850	Mola_mola
ENSNLEG00000006062	UPF1	99	86.355	ENSMMOG00000007881	upf1	94	86.940	Mola_mola
ENSNLEG00000006062	UPF1	99	93.245	ENSMODG00000003689	UPF1	95	92.198	Monodelphis_domestica
ENSNLEG00000006062	UPF1	99	86.862	ENSMALG00000018100	-	95	86.957	Monopterus_albus
ENSNLEG00000006062	UPF1	99	86.108	ENSMALG00000000144	upf1	95	86.489	Monopterus_albus
ENSNLEG00000006062	UPF1	100	93.156	MGP_CAROLIEiJ_G0031142	Upf1	94	93.156	Mus_caroli
ENSNLEG00000006062	UPF1	100	93.156	ENSMUSG00000058301	Upf1	94	93.156	Mus_musculus
ENSNLEG00000006062	UPF1	100	93.156	MGP_PahariEiJ_G0021607	Upf1	94	93.156	Mus_pahari
ENSNLEG00000006062	UPF1	100	93.156	MGP_SPRETEiJ_G0032260	Upf1	94	93.156	Mus_spretus
ENSNLEG00000006062	UPF1	99	92.959	ENSMPUG00000015516	UPF1	93	92.959	Mustela_putorius_furo
ENSNLEG00000006062	UPF1	99	92.769	ENSMLUG00000012122	UPF1	93	92.769	Myotis_lucifugus
ENSNLEG00000006062	UPF1	100	93.156	ENSNGAG00000024107	Upf1	93	93.156	Nannospalax_galili
ENSNLEG00000006062	UPF1	99	84.390	ENSNBRG00000000670	upf1	95	84.848	Neolamprologus_brichardi
ENSNLEG00000006062	UPF1	98	87.706	ENSNBRG00000022069	-	100	87.706	Neolamprologus_brichardi
ENSNLEG00000006062	UPF1	80	94.314	ENSMEUG00000014146	-	71	94.314	Notamacropus_eugenii
ENSNLEG00000006062	UPF1	100	84.681	ENSOPRG00000014018	UPF1	100	84.681	Ochotona_princeps
ENSNLEG00000006062	UPF1	100	93.726	ENSODEG00000012426	UPF1	95	93.726	Octodon_degus
ENSNLEG00000006062	UPF1	99	85.421	ENSONIG00000010452	upf1	95	86.748	Oreochromis_niloticus
ENSNLEG00000006062	UPF1	99	88.023	ENSONIG00000012729	-	95	88.023	Oreochromis_niloticus
ENSNLEG00000006062	UPF1	99	92.783	ENSOANG00000004568	UPF1	93	92.783	Ornithorhynchus_anatinus
ENSNLEG00000006062	UPF1	99	87.749	ENSORLG00000008453	upf1	95	87.749	Oryzias_latipes
ENSNLEG00000006062	UPF1	99	87.749	ENSORLG00020014758	upf1	95	87.749	Oryzias_latipes_hni
ENSNLEG00000006062	UPF1	99	87.749	ENSORLG00015010165	upf1	100	83.815	Oryzias_latipes_hsok
ENSNLEG00000006062	UPF1	99	87.844	ENSOMEG00000003665	upf1	95	87.844	Oryzias_melastigma
ENSNLEG00000006062	UPF1	100	93.061	ENSOGAG00000012866	UPF1	93	93.061	Otolemur_garnettii
ENSNLEG00000006062	UPF1	96	93.393	ENSOARG00000010739	UPF1	93	93.393	Ovis_aries
ENSNLEG00000006062	UPF1	100	94.202	ENSPPAG00000043884	UPF1	96	94.202	Pan_paniscus
ENSNLEG00000006062	UPF1	99	93.911	ENSPPRG00000023470	UPF1	93	93.911	Panthera_pardus
ENSNLEG00000006062	UPF1	99	90.771	ENSPTIG00000010159	UPF1	99	90.771	Panthera_tigris_altaica
ENSNLEG00000006062	UPF1	100	94.202	ENSPTRG00000010721	UPF1	94	94.202	Pan_troglodytes
ENSNLEG00000006062	UPF1	100	94.202	ENSPANG00000008847	UPF1	94	94.202	Papio_anubis
ENSNLEG00000006062	UPF1	93	87.361	ENSPKIG00000006069	upf1	94	87.361	Paramormyrops_kingsleyae
ENSNLEG00000006062	UPF1	76	96.471	ENSPSIG00000009491	UPF1	100	96.471	Pelodiscus_sinensis
ENSNLEG00000006062	UPF1	99	84.834	ENSPMGG00000017327	upf1	95	85.052	Periophthalmus_magnuspinnatus
ENSNLEG00000006062	UPF1	100	93.251	ENSPEMG00000001085	Upf1	94	93.251	Peromyscus_maniculatus_bairdii
ENSNLEG00000006062	UPF1	99	83.745	ENSPMAG00000001206	upf1	94	83.745	Petromyzon_marinus
ENSNLEG00000006062	UPF1	99	92.198	ENSPCIG00000006156	UPF1	93	92.198	Phascolarctos_cinereus
ENSNLEG00000006062	UPF1	99	87.833	ENSPLAG00000016232	-	95	87.833	Poecilia_latipinna
ENSNLEG00000006062	UPF1	99	84.934	ENSPLAG00000018155	-	95	84.934	Poecilia_latipinna
ENSNLEG00000006062	UPF1	99	87.928	ENSPMEG00000016319	-	95	87.928	Poecilia_mexicana
ENSNLEG00000006062	UPF1	99	85.484	ENSPMEG00000011443	-	95	85.484	Poecilia_mexicana
ENSNLEG00000006062	UPF1	99	87.643	ENSPREG00000011247	-	95	87.643	Poecilia_reticulata
ENSNLEG00000006062	UPF1	99	85.499	ENSPREG00000009940	upf1	94	85.499	Poecilia_reticulata
ENSNLEG00000006062	UPF1	100	88.973	ENSPPYG00000009752	UPF1	93	88.973	Pongo_abelii
ENSNLEG00000006062	UPF1	67	100.000	ENSPCAG00000012962	UPF1	64	100.000	Procavia_capensis
ENSNLEG00000006062	UPF1	100	93.916	ENSPCOG00000023813	UPF1	94	93.916	Propithecus_coquereli
ENSNLEG00000006062	UPF1	65	100.000	ENSPVAG00000003183	UPF1	61	100.000	Pteropus_vampyrus
ENSNLEG00000006062	UPF1	99	87.928	ENSPNYG00000016731	-	95	87.928	Pundamilia_nyererei
ENSNLEG00000006062	UPF1	99	85.140	ENSPNYG00000003694	upf1	95	86.466	Pundamilia_nyererei
ENSNLEG00000006062	UPF1	99	88.414	ENSPNAG00000025614	upf1	95	88.984	Pygocentrus_nattereri
ENSNLEG00000006062	UPF1	100	93.156	ENSRNOG00000020134	Upf1	94	93.156	Rattus_norvegicus
ENSNLEG00000006062	UPF1	100	91.825	ENSRBIG00000013894	UPF1	93	96.355	Rhinopithecus_bieti
ENSNLEG00000006062	UPF1	100	94.202	ENSRROG00000040935	UPF1	97	94.202	Rhinopithecus_roxellana
ENSNLEG00000006062	UPF1	77	53.034	YMR080C	NAM7	84	53.034	Saccharomyces_cerevisiae
ENSNLEG00000006062	UPF1	99	94.095	ENSSBOG00000023632	UPF1	96	94.095	Saimiri_boliviensis_boliviensis
ENSNLEG00000006062	UPF1	99	93.067	ENSSHAG00000010499	UPF1	100	93.067	Sarcophilus_harrisii
ENSNLEG00000006062	UPF1	99	90.399	ENSSFOG00015021095	upf1	99	90.399	Scleropages_formosus
ENSNLEG00000006062	UPF1	99	88.034	ENSSMAG00000021018	-	95	88.129	Scophthalmus_maximus
ENSNLEG00000006062	UPF1	99	84.536	ENSSMAG00000005055	upf1	95	85.487	Scophthalmus_maximus
ENSNLEG00000006062	UPF1	99	85.313	ENSSDUG00000013320	upf1	95	86.436	Seriola_dumerili
ENSNLEG00000006062	UPF1	99	88.224	ENSSDUG00000009629	-	95	88.319	Seriola_dumerili
ENSNLEG00000006062	UPF1	99	86.119	ENSSLDG00000020868	upf1	95	86.711	Seriola_lalandi_dorsalis
ENSNLEG00000006062	UPF1	99	88.224	ENSSLDG00000006878	-	95	88.319	Seriola_lalandi_dorsalis
ENSNLEG00000006062	UPF1	99	91.912	ENSSPUG00000010538	UPF1	94	91.912	Sphenodon_punctatus
ENSNLEG00000006062	UPF1	99	88.213	ENSSPAG00000011521	-	95	88.213	Stegastes_partitus
ENSNLEG00000006062	UPF1	99	84.411	ENSSPAG00000000003	upf1	95	84.455	Stegastes_partitus
ENSNLEG00000006062	UPF1	99	93.911	ENSSSCG00000039301	UPF1	99	92.864	Sus_scrofa
ENSNLEG00000006062	UPF1	81	84.571	ENSTGUG00000001057	UPF1	92	84.571	Taeniopygia_guttata
ENSNLEG00000006062	UPF1	99	86.204	ENSTRUG00000000150	upf1	95	86.204	Takifugu_rubripes
ENSNLEG00000006062	UPF1	99	86.977	ENSTRUG00000005131	-	95	87.072	Takifugu_rubripes
ENSNLEG00000006062	UPF1	99	89.876	ENSTTRG00000011544	UPF1	93	89.876	Tursiops_truncatus
ENSNLEG00000006062	UPF1	99	92.864	ENSUAMG00000007093	UPF1	93	92.864	Ursus_americanus
ENSNLEG00000006062	UPF1	99	93.911	ENSUMAG00000006652	UPF1	98	93.911	Ursus_maritimus
ENSNLEG00000006062	UPF1	99	92.959	ENSVVUG00000007797	UPF1	93	92.959	Vulpes_vulpes
ENSNLEG00000006062	UPF1	99	77.820	ENSXETG00000013602	upf1	93	77.820	Xenopus_tropicalis
ENSNLEG00000006062	UPF1	99	88.004	ENSXCOG00000005764	-	100	88.004	Xiphophorus_couchianus
ENSNLEG00000006062	UPF1	96	84.926	ENSXCOG00000015275	-	91	84.926	Xiphophorus_couchianus
ENSNLEG00000006062	UPF1	99	85.361	ENSXMAG00000001703	-	95	85.361	Xiphophorus_maculatus
ENSNLEG00000006062	UPF1	99	87.738	ENSXMAG00000002540	-	95	87.738	Xiphophorus_maculatus