EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSNLEG00000006748 (Gene tree)
Gene ID: 100582736
Gene Symbol: PRDM4
Alias: PFM1
Full Name: PR/SET domain 4
Gene Type: protein_coding
Species: Nomascus_leucogenys
Status: putative
Strand: Minus strand
Length: 27711 bases
Position: chr10:81220718-81248428
Accession: 100582736
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNLEP00000008216	zf-C2H2	PF00096.26	6.2e-19	1	2
ENSNLEP00000008216	zf-C2H2	PF00096.26	6.2e-19	2	2
ENSNLEP00000008216	zf-met	PF12874.7	4.7e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNLET00000008604	PRDM4-201	3796	XM_003269978	ENSNLEP00000008216	801 (aa)	XP_003270026	G1R4U4

Gene Model

Click here to download ENSNLEG00000006748's gene model file

Pathways

Pathway ID	Pathway Name	Source
nle04722	Neurotrophin signaling pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSNLEG00000006748's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNLEG00000006748	PRDM4	100	99.625	ENSG00000110851	PRDM4	100	99.625	Homo_sapiens
ENSNLEG00000006748	PRDM4	99	97.247	ENSAMEG00000016174	PRDM4	99	97.247	Ailuropoda_melanoleuca
ENSNLEG00000006748	PRDM4	99	87.343	ENSAPLG00000009846	PRDM4	99	86.717	Anas_platyrhynchos
ENSNLEG00000006748	PRDM4	100	99.001	ENSANAG00000024800	PRDM4	100	99.001	Aotus_nancymaae
ENSNLEG00000006748	PRDM4	100	97.129	ENSBTAG00000012999	PRDM4	100	97.129	Bos_taurus
ENSNLEG00000006748	PRDM4	100	98.502	ENSCJAG00000015261	PRDM4	100	98.502	Callithrix_jacchus
ENSNLEG00000006748	PRDM4	100	97.253	ENSCAFG00000001788	PRDM4	100	97.253	Canis_familiaris
ENSNLEG00000006748	PRDM4	100	97.253	ENSCAFG00020004916	PRDM4	100	97.253	Canis_lupus_dingo
ENSNLEG00000006748	PRDM4	100	96.754	ENSCHIG00000019409	PRDM4	100	96.754	Capra_hircus
ENSNLEG00000006748	PRDM4	100	97.503	ENSTSYG00000009248	PRDM4	100	97.503	Carlito_syrichta
ENSNLEG00000006748	PRDM4	99	90.738	ENSCAPG00000013937	PRDM4	99	90.613	Cavia_aperea
ENSNLEG00000006748	PRDM4	99	90.186	ENSCPOG00000022385	PRDM4	100	90.062	Cavia_porcellus
ENSNLEG00000006748	PRDM4	100	99.126	ENSCCAG00000036033	PRDM4	100	99.126	Cebus_capucinus
ENSNLEG00000006748	PRDM4	100	99.251	ENSCATG00000044797	PRDM4	100	99.251	Cercocebus_atys
ENSNLEG00000006748	PRDM4	99	92.910	ENSCLAG00000007545	PRDM4	100	93.284	Chinchilla_lanigera
ENSNLEG00000006748	PRDM4	100	99.501	ENSCSAG00000002896	PRDM4	100	99.501	Chlorocebus_sabaeus
ENSNLEG00000006748	PRDM4	76	97.273	ENSCHOG00000001744	PRDM4	86	97.273	Choloepus_hoffmanni
ENSNLEG00000006748	PRDM4	99	88.080	ENSCPBG00000023187	PRDM4	100	87.704	Chrysemys_picta_bellii
ENSNLEG00000006748	PRDM4	100	99.376	ENSCANG00000021804	PRDM4	100	99.376	Colobus_angolensis_palliatus
ENSNLEG00000006748	PRDM4	99	93.035	ENSCGRG00001015102	-	100	92.662	Cricetulus_griseus_chok1gshd
ENSNLEG00000006748	PRDM4	96	93.161	ENSCGRG00000004044	-	100	92.774	Cricetulus_griseus_crigri
ENSNLEG00000006748	PRDM4	100	96.629	ENSDNOG00000032478	PRDM4	100	96.629	Dasypus_novemcinctus
ENSNLEG00000006748	PRDM4	99	82.183	ENSDORG00000015081	-	100	81.932	Dipodomys_ordii
ENSNLEG00000006748	PRDM4	93	45.798	ENSEBUG00000003775	prdm4	99	46.122	Eptatretus_burgeri
ENSNLEG00000006748	PRDM4	100	97.253	ENSECAG00000015423	PRDM4	100	97.264	Equus_caballus
ENSNLEG00000006748	PRDM4	94	93.475	ENSEEUG00000006569	PRDM4	99	93.076	Erinaceus_europaeus
ENSNLEG00000006748	PRDM4	99	60.389	ENSELUG00000015265	prdm4	99	60.632	Esox_lucius
ENSNLEG00000006748	PRDM4	100	97.753	ENSFCAG00000022478	PRDM4	100	97.753	Felis_catus
ENSNLEG00000006748	PRDM4	99	87.453	ENSFALG00000013342	PRDM4	100	86.951	Ficedula_albicollis
ENSNLEG00000006748	PRDM4	100	86.924	ENSGALG00000012619	PRDM4	100	86.301	Gallus_gallus
ENSNLEG00000006748	PRDM4	99	87.719	ENSGAGG00000002763	PRDM4	95	87.343	Gopherus_agassizii
ENSNLEG00000006748	PRDM4	99	99.500	ENSGGOG00000001244	PRDM4	99	99.500	Gorilla_gorilla
ENSNLEG00000006748	PRDM4	99	93.977	ENSHGLG00000004590	PRDM4	98	93.726	Heterocephalus_glaber_female
ENSNLEG00000006748	PRDM4	99	92.919	ENSHGLG00100007464	PRDM4	100	92.671	Heterocephalus_glaber_male
ENSNLEG00000006748	PRDM4	95	61.269	ENSIPUG00000024162	prdm4	93	61.619	Ictalurus_punctatus
ENSNLEG00000006748	PRDM4	100	96.629	ENSSTOG00000016168	PRDM4	100	96.629	Ictidomys_tridecemlineatus
ENSNLEG00000006748	PRDM4	99	95.849	ENSJJAG00000022448	-	95	93.280	Jaculus_jaculus
ENSNLEG00000006748	PRDM4	99	72.772	ENSLACG00000007452	PRDM4	99	73.020	Latimeria_chalumnae
ENSNLEG00000006748	PRDM4	78	41.689	ENSLOCG00000017092	prdm4	100	52.814	Lepisosteus_oculatus
ENSNLEG00000006748	PRDM4	98	96.574	ENSLAFG00000001483	PRDM4	100	96.574	Loxodonta_africana
ENSNLEG00000006748	PRDM4	100	99.625	ENSMFAG00000041862	PRDM4	100	99.625	Macaca_fascicularis
ENSNLEG00000006748	PRDM4	100	99.625	ENSMMUG00000015550	PRDM4	100	99.625	Macaca_mulatta
ENSNLEG00000006748	PRDM4	100	99.376	ENSMNEG00000032319	PRDM4	100	99.376	Macaca_nemestrina
ENSNLEG00000006748	PRDM4	100	99.501	ENSMLEG00000039607	PRDM4	100	99.501	Mandrillus_leucophaeus
ENSNLEG00000006748	PRDM4	99	79.250	ENSMGAG00000012815	PRDM4	100	78.625	Meleagris_gallopavo
ENSNLEG00000006748	PRDM4	100	96.504	ENSMICG00000007807	PRDM4	100	96.504	Microcebus_murinus
ENSNLEG00000006748	PRDM4	99	94.110	ENSMOCG00000000753	Prdm4	99	93.860	Microtus_ochrogaster
ENSNLEG00000006748	PRDM4	99	94.605	ENSMUSG00000035529	Prdm4	100	94.354	Mus_musculus
ENSNLEG00000006748	PRDM4	99	93.852	MGP_PahariEiJ_G0031398	Prdm4	100	93.901	Mus_pahari
ENSNLEG00000006748	PRDM4	99	95.107	MGP_SPRETEiJ_G0016505	Prdm4	100	95.172	Mus_spretus
ENSNLEG00000006748	PRDM4	99	91.147	ENSMPUG00000012238	PRDM4	99	91.147	Mustela_putorius_furo
ENSNLEG00000006748	PRDM4	99	96.992	ENSMLUG00000000767	PRDM4	99	96.992	Myotis_lucifugus
ENSNLEG00000006748	PRDM4	99	95.609	ENSNGAG00000018627	Prdm4	100	95.609	Nannospalax_galili
ENSNLEG00000006748	PRDM4	89	88.967	ENSMEUG00000004495	PRDM4	89	88.967	Notamacropus_eugenii
ENSNLEG00000006748	PRDM4	88	94.940	ENSOPRG00000010192	PRDM4	89	94.940	Ochotona_princeps
ENSNLEG00000006748	PRDM4	99	90.625	ENSODEG00000014750	PRDM4	99	90.500	Octodon_degus
ENSNLEG00000006748	PRDM4	100	90.762	ENSOANG00000005526	PRDM4	100	90.762	Ornithorhynchus_anatinus
ENSNLEG00000006748	PRDM4	93	96.567	ENSOCUG00000012859	PRDM4	96	96.567	Oryctolagus_cuniculus
ENSNLEG00000006748	PRDM4	99	97.742	ENSOGAG00000011945	PRDM4	100	97.742	Otolemur_garnettii
ENSNLEG00000006748	PRDM4	100	96.504	ENSOARG00000017955	PRDM4	100	96.504	Ovis_aries
ENSNLEG00000006748	PRDM4	100	99.625	ENSPPAG00000038438	PRDM4	100	99.625	Pan_paniscus
ENSNLEG00000006748	PRDM4	100	97.753	ENSPPRG00000004144	PRDM4	100	97.753	Panthera_pardus
ENSNLEG00000006748	PRDM4	100	97.753	ENSPTIG00000005847	PRDM4	100	97.753	Panthera_tigris_altaica
ENSNLEG00000006748	PRDM4	100	99.625	ENSPTRG00000005400	PRDM4	100	99.625	Pan_troglodytes
ENSNLEG00000006748	PRDM4	100	99.625	ENSPANG00000022084	PRDM4	100	99.625	Papio_anubis
ENSNLEG00000006748	PRDM4	99	59.691	ENSPKIG00000000875	prdm4	99	60.404	Paramormyrops_kingsleyae
ENSNLEG00000006748	PRDM4	91	81.369	ENSPSIG00000012066	PRDM4	100	81.369	Pelodiscus_sinensis
ENSNLEG00000006748	PRDM4	99	95.483	ENSPEMG00000014598	Prdm4	100	95.483	Peromyscus_maniculatus_bairdii
ENSNLEG00000006748	PRDM4	100	88.930	ENSPCIG00000009471	PRDM4	100	88.930	Phascolarctos_cinereus
ENSNLEG00000006748	PRDM4	100	99.501	ENSPPYG00000004913	PRDM4	100	99.501	Pongo_abelii
ENSNLEG00000006748	PRDM4	83	95.793	ENSPCAG00000009987	PRDM4	83	95.793	Procavia_capensis
ENSNLEG00000006748	PRDM4	100	96.754	ENSPCOG00000021060	PRDM4	100	96.754	Propithecus_coquereli
ENSNLEG00000006748	PRDM4	100	96.758	ENSPVAG00000001596	PRDM4	100	96.758	Pteropus_vampyrus
ENSNLEG00000006748	PRDM4	99	93.860	ENSRNOG00000004962	Prdm4	100	93.609	Rattus_norvegicus
ENSNLEG00000006748	PRDM4	100	99.376	ENSRBIG00000035488	PRDM4	100	99.376	Rhinopithecus_bieti
ENSNLEG00000006748	PRDM4	100	99.501	ENSRROG00000012779	PRDM4	100	99.501	Rhinopithecus_roxellana
ENSNLEG00000006748	PRDM4	100	99.001	ENSSBOG00000000403	PRDM4	100	99.001	Saimiri_boliviensis_boliviensis
ENSNLEG00000006748	PRDM4	99	63.670	ENSSFOG00015023358	prdm4	99	63.670	Scleropages_formosus
ENSNLEG00000006748	PRDM4	100	97.004	ENSSSCG00000000160	PRDM4	100	97.004	Sus_scrofa
ENSNLEG00000006748	PRDM4	99	87.343	ENSTGUG00000010962	-	99	86.842	Taeniopygia_guttata
ENSNLEG00000006748	PRDM4	73	89.761	ENSTBEG00000001732	PRDM4	84	89.761	Tupaia_belangeri
ENSNLEG00000006748	PRDM4	100	96.879	ENSTTRG00000011056	PRDM4	100	96.879	Tursiops_truncatus
ENSNLEG00000006748	PRDM4	100	97.628	ENSUAMG00000022796	PRDM4	100	97.628	Ursus_americanus
ENSNLEG00000006748	PRDM4	100	97.628	ENSUMAG00000017231	PRDM4	100	97.628	Ursus_maritimus
ENSNLEG00000006748	PRDM4	99	97.491	ENSVPAG00000002215	PRDM4	100	97.491	Vicugna_pacos
ENSNLEG00000006748	PRDM4	100	97.253	ENSVVUG00000023397	PRDM4	100	97.253	Vulpes_vulpes