EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSNLEG00000008966 (Gene tree)
Gene ID: 100590655
Gene Symbol: SRRM1
Alias: MGC39488|POP101|SRM160
Full Name: serine and arginine repetitive matrix 1
Gene Type: protein_coding
Species: Nomascus_leucogenys
Status: putative
Strand: Plus strand
Length: 30401 bases
Position: chr24:23614817-23645217
Accession: 100590655
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNLEP00000046461	PWI	PF01480.17	4.4e-30	1	1
ENSNLEP00000024611	PWI	PF01480.17	8.1e-30	1	1
ENSNLEP00000028961	PWI	PF01480.17	8.2e-30	1	1
ENSNLEP00000010958	PWI	PF01480.17	8.7e-30	1	1
ENSNLEP00000033146	PWI	PF01480.17	8.8e-30	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNLET00000036659	SRRM1-202	2742	XM_012498526	ENSNLEP00000033146	913 (aa)	XP_012353980	A0A2I3GPA2
ENSNLET00000044845	SRRM1-205	1587	-	ENSNLEP00000046461	528 (aa)	-	A0A2I3HSJ9
ENSNLET00000046660	SRRM1-204	2451	-	ENSNLEP00000024611	816 (aa)	-	A0A2I3FQX8
ENSNLET00000011492	SRRM1-201	4007	XM_003271617	ENSNLEP00000010958	904 (aa)	XP_003271665	G1RCK9
ENSNLET00000037844	SRRM1-203	2628	-	ENSNLEP00000028961	875 (aa)	-	A0A2I3GCD3

Gene Model

Click here to download ENSNLEG00000008966's gene model file

Pathways

Pathway ID	Pathway Name	Source
nle03013	RNA transport	KEGG
nle03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSNLEG00000008966's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNLEG00000008966	SRRM1	100	100.000	ENSG00000133226	SRRM1	100	100.000	Homo_sapiens
ENSNLEG00000008966	SRRM1	100	98.357	ENSAMEG00000010075	SRRM1	100	98.357	Ailuropoda_melanoleuca
ENSNLEG00000008966	SRRM1	51	87.085	ENSAPLG00000002066	SRRM1	59	76.335	Anas_platyrhynchos
ENSNLEG00000008966	SRRM1	100	99.004	ENSANAG00000035606	SRRM1	100	99.004	Aotus_nancymaae
ENSNLEG00000008966	SRRM1	100	97.677	ENSBTAG00000013772	SRRM1	100	97.677	Bos_taurus
ENSNLEG00000008966	SRRM1	100	98.576	ENSCJAG00000020822	SRRM1	100	98.576	Callithrix_jacchus
ENSNLEG00000008966	SRRM1	96	89.501	ENSCAFG00020000003	-	98	89.573	Canis_lupus_dingo
ENSNLEG00000008966	SRRM1	100	98.230	ENSCAFG00020020948	SRRM1	100	98.230	Canis_lupus_dingo
ENSNLEG00000008966	SRRM1	100	96.507	ENSCHIG00000014656	SRRM1	100	96.507	Capra_hircus
ENSNLEG00000008966	SRRM1	100	98.357	ENSTSYG00000006782	SRRM1	100	98.357	Carlito_syrichta
ENSNLEG00000008966	SRRM1	99	94.649	ENSCAPG00000011473	SRRM1	100	94.649	Cavia_aperea
ENSNLEG00000008966	SRRM1	100	95.575	ENSCPOG00000015594	SRRM1	100	95.575	Cavia_porcellus
ENSNLEG00000008966	SRRM1	100	98.795	ENSCCAG00000029474	SRRM1	100	98.795	Cebus_capucinus
ENSNLEG00000008966	SRRM1	100	99.755	ENSCATG00000031303	SRRM1	100	99.755	Cercocebus_atys
ENSNLEG00000008966	SRRM1	100	96.571	ENSCLAG00000014592	SRRM1	100	96.571	Chinchilla_lanigera
ENSNLEG00000008966	SRRM1	76	97.500	ENSCHOG00000000027	SRRM1	73	98.873	Choloepus_hoffmanni
ENSNLEG00000008966	SRRM1	100	99.562	ENSCANG00000028271	SRRM1	100	99.562	Colobus_angolensis_palliatus
ENSNLEG00000008966	SRRM1	94	97.166	ENSCGRG00001014174	Srrm1	60	97.166	Cricetulus_griseus_chok1gshd
ENSNLEG00000008966	SRRM1	53	62.447	ENSCGRG00001013517	-	59	58.071	Cricetulus_griseus_chok1gshd
ENSNLEG00000008966	SRRM1	53	62.447	ENSCGRG00000007531	-	59	58.071	Cricetulus_griseus_crigri
ENSNLEG00000008966	SRRM1	92	97.125	ENSCGRG00000017603	Srrm1	54	97.125	Cricetulus_griseus_crigri
ENSNLEG00000008966	SRRM1	96	93.100	ENSDNOG00000049141	SRRM1	98	93.100	Dasypus_novemcinctus
ENSNLEG00000008966	SRRM1	100	96.623	ENSEASG00005004270	SRRM1	100	96.623	Equus_asinus_asinus
ENSNLEG00000008966	SRRM1	100	97.345	ENSECAG00000026981	SRRM1	100	97.345	Equus_caballus
ENSNLEG00000008966	SRRM1	51	100.000	ENSEEUG00000013830	SRRM1	74	90.385	Erinaceus_europaeus
ENSNLEG00000008966	SRRM1	100	98.451	ENSFCAG00000000678	-	100	98.451	Felis_catus
ENSNLEG00000008966	SRRM1	100	97.345	ENSFDAG00000009903	SRRM1	100	97.345	Fukomys_damarensis
ENSNLEG00000008966	SRRM1	50	90.602	ENSGALG00000001283	SRRM1	99	100.000	Gallus_gallus
ENSNLEG00000008966	SRRM1	100	99.890	ENSGGOG00000005209	SRRM1	100	99.890	Gorilla_gorilla
ENSNLEG00000008966	SRRM1	79	72.059	ENSHGLG00000013761	-	72	91.935	Heterocephalus_glaber_female
ENSNLEG00000008966	SRRM1	100	97.345	ENSHGLG00000017105	SRRM1	100	97.345	Heterocephalus_glaber_female
ENSNLEG00000008966	SRRM1	99	96.889	ENSHGLG00100016772	SRRM1	99	96.889	Heterocephalus_glaber_male
ENSNLEG00000008966	SRRM1	100	98.562	ENSSTOG00000014640	SRRM1	100	98.562	Ictidomys_tridecemlineatus
ENSNLEG00000008966	SRRM1	100	94.486	ENSLAFG00000013830	SRRM1	100	94.486	Loxodonta_africana
ENSNLEG00000008966	SRRM1	100	99.755	ENSMFAG00000025726	SRRM1	100	99.755	Macaca_fascicularis
ENSNLEG00000008966	SRRM1	86	79.815	ENSMFAG00000038841	-	61	80.885	Macaca_fascicularis
ENSNLEG00000008966	SRRM1	100	99.632	ENSMMUG00000006645	SRRM1	100	99.632	Macaca_mulatta
ENSNLEG00000008966	SRRM1	55	80.282	ENSMMUG00000039269	-	59	77.096	Macaca_mulatta
ENSNLEG00000008966	SRRM1	100	99.755	ENSMNEG00000039415	SRRM1	100	99.755	Macaca_nemestrina
ENSNLEG00000008966	SRRM1	59	71.082	ENSMLEG00000032221	-	61	73.764	Mandrillus_leucophaeus
ENSNLEG00000008966	SRRM1	98	97.692	ENSMLEG00000038030	-	100	94.118	Mandrillus_leucophaeus
ENSNLEG00000008966	SRRM1	94	97.166	ENSMAUG00000015705	Srrm1	54	97.166	Mesocricetus_auratus
ENSNLEG00000008966	SRRM1	100	98.451	ENSMICG00000006553	SRRM1	100	98.451	Microcebus_murinus
ENSNLEG00000008966	SRRM1	94	97.166	MGP_CAROLIEiJ_G0026636	Srrm1	100	85.965	Mus_caroli
ENSNLEG00000008966	SRRM1	94	97.368	ENSMUSG00000028809	Srrm1	100	85.965	Mus_musculus
ENSNLEG00000008966	SRRM1	94	97.368	MGP_PahariEiJ_G0028969	Srrm1	100	85.965	Mus_pahari
ENSNLEG00000008966	SRRM1	94	97.368	MGP_SPRETEiJ_G0027616	Srrm1	100	85.965	Mus_spretus
ENSNLEG00000008966	SRRM1	60	98.266	ENSMPUG00000000018	-	75	98.780	Mustela_putorius_furo
ENSNLEG00000008966	SRRM1	96	95.119	ENSMLUG00000006246	SRRM1	87	95.119	Myotis_lucifugus
ENSNLEG00000008966	SRRM1	94	97.368	ENSNGAG00000014562	Srrm1	54	97.368	Nannospalax_galili
ENSNLEG00000008966	SRRM1	55	90.123	ENSMEUG00000014704	SRRM1	57	83.598	Notamacropus_eugenii
ENSNLEG00000008966	SRRM1	100	97.162	ENSOCUG00000008438	SRRM1	100	97.162	Oryctolagus_cuniculus
ENSNLEG00000008966	SRRM1	100	96.950	ENSOGAG00000010210	SRRM1	100	96.950	Otolemur_garnettii
ENSNLEG00000008966	SRRM1	95	97.405	ENSOARG00000006453	SRRM1	99	97.406	Ovis_aries
ENSNLEG00000008966	SRRM1	100	99.890	ENSPPAG00000043918	SRRM1	100	99.890	Pan_paniscus
ENSNLEG00000008966	SRRM1	100	98.451	ENSPPRG00000002509	SRRM1	100	98.451	Panthera_pardus
ENSNLEG00000008966	SRRM1	100	92.896	ENSPTIG00000008778	-	100	92.896	Panthera_tigris_altaica
ENSNLEG00000008966	SRRM1	100	100.000	ENSPTRG00000000349	SRRM1	100	100.000	Pan_troglodytes
ENSNLEG00000008966	SRRM1	100	99.755	ENSPANG00000010194	SRRM1	100	99.755	Papio_anubis
ENSNLEG00000008966	SRRM1	55	79.637	ENSPANG00000035568	-	59	78.629	Papio_anubis
ENSNLEG00000008966	SRRM1	94	97.166	ENSPEMG00000006254	Srrm1	54	97.166	Peromyscus_maniculatus_bairdii
ENSNLEG00000008966	SRRM1	100	99.672	ENSPPYG00000001716	SRRM1	100	99.672	Pongo_abelii
ENSNLEG00000008966	SRRM1	52	100.000	ENSPCAG00000015138	SRRM1	52	100.000	Procavia_capensis
ENSNLEG00000008966	SRRM1	100	98.468	ENSPCOG00000021311	SRRM1	100	98.468	Propithecus_coquereli
ENSNLEG00000008966	SRRM1	100	98.138	ENSPVAG00000005836	SRRM1	100	98.138	Pteropus_vampyrus
ENSNLEG00000008966	SRRM1	94	97.166	ENSRNOG00000018194	Srrm1	54	97.166	Rattus_norvegicus
ENSNLEG00000008966	SRRM1	95	98.603	ENSRBIG00000035461	SRRM1	99	92.982	Rhinopithecus_bieti
ENSNLEG00000008966	SRRM1	100	99.671	ENSRROG00000035151	SRRM1	100	99.671	Rhinopithecus_roxellana
ENSNLEG00000008966	SRRM1	100	97.700	ENSSBOG00000019884	SRRM1	99	100.000	Saimiri_boliviensis_boliviensis
ENSNLEG00000008966	SRRM1	63	94.754	ENSSARG00000013718	SRRM1	60	94.754	Sorex_araneus
ENSNLEG00000008966	SRRM1	67	88.129	ENSSPUG00000015890	SRRM1	57	83.026	Sphenodon_punctatus
ENSNLEG00000008966	SRRM1	99	97.475	ENSSSCG00000032947	SRRM1	100	97.929	Sus_scrofa
ENSNLEG00000008966	SRRM1	100	97.700	ENSTBEG00000000100	SRRM1	100	97.700	Tupaia_belangeri
ENSNLEG00000008966	SRRM1	99	97.572	ENSTTRG00000009365	SRRM1	100	97.572	Tursiops_truncatus
ENSNLEG00000008966	SRRM1	88	98.997	ENSUMAG00000013121	SRRM1	95	98.997	Ursus_maritimus
ENSNLEG00000008966	SRRM1	96	93.764	ENSVPAG00000007698	SRRM1	100	93.764	Vicugna_pacos
ENSNLEG00000008966	SRRM1	96	98.724	ENSVVUG00000026966	SRRM1	97	95.642	Vulpes_vulpes