EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSNLEG00000011074 (Gene tree)
Gene ID: 100593529
Gene Symbol: CPSF4
Alias: CPSF30|NAR
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Nomascus_leucogenys
Status: putative
Strand: Plus strand
Length: 19396 bases
Position: chr17:34495483-34514878
Accession: 100593529
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNLEP00000013467	zf-CCCH	PF00642.24	2.4e-20	1	2
ENSNLEP00000013467	zf-CCCH	PF00642.24	2.4e-20	2	2
ENSNLEP00000029704	zf-CCCH	PF00642.24	3.7e-20	1	2
ENSNLEP00000029704	zf-CCCH	PF00642.24	3.7e-20	2	2
ENSNLEP00000026773	zf-CCCH	PF00642.24	1.9e-15	1	2
ENSNLEP00000026773	zf-CCCH	PF00642.24	1.9e-15	2	2
ENSNLEP00000026773	zf-CCHC	PF00098.23	4.3e-06	1	1
ENSNLEP00000013467	zf-CCHC	PF00098.23	5.2e-06	1	1
ENSNLEP00000029704	zf-CCHC	PF00098.23	5.7e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNLET00000040930	CPSF4-202	786	-	ENSNLEP00000029704	261 (aa)	-	A0A2I3GEK1
ENSNLET00000014134	CPSF4-201	1747	XM_003278067	ENSNLEP00000013467	244 (aa)	XP_003278115	G1RJR0
ENSNLET00000038085	CPSF4-203	636	-	ENSNLEP00000026773	211 (aa)	-	A0A2I3G3R5

Gene Model

Click here to download ENSNLEG00000011074's gene model file

Pathways

Pathway ID	Pathway Name	Source
nle03015	mRNA surveillance pathway	KEGG
nle05164	Influenza A	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSNLEG00000011074's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSNLEG00000011074	CPSF4	71	65.318	ENSNLEG00000001420	CPSF4L	92	68.293

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNLEG00000011074	CPSF4	100	100.000	ENSG00000160917	CPSF4	100	100.000	Homo_sapiens
ENSNLEG00000011074	CPSF4	66	71.111	ENSAPOG00000004921	cpsf4	100	71.111	Acanthochromis_polyacanthus
ENSNLEG00000011074	CPSF4	100	96.283	ENSAMEG00000006252	CPSF4	100	96.283	Ailuropoda_melanoleuca
ENSNLEG00000011074	CPSF4	100	87.705	ENSACIG00000009248	cpsf4	100	87.705	Amphilophus_citrinellus
ENSNLEG00000011074	CPSF4	100	82.707	ENSAOCG00000019616	cpsf4	100	82.836	Amphiprion_ocellaris
ENSNLEG00000011074	CPSF4	100	82.707	ENSAPEG00000011679	cpsf4	100	82.836	Amphiprion_percula
ENSNLEG00000011074	CPSF4	100	85.020	ENSATEG00000007010	cpsf4	100	85.425	Anabas_testudineus
ENSNLEG00000011074	CPSF4	100	90.706	ENSACAG00000012941	CPSF4	89	90.706	Anolis_carolinensis
ENSNLEG00000011074	CPSF4	100	100.000	ENSANAG00000021360	CPSF4	100	100.000	Aotus_nancymaae
ENSNLEG00000011074	CPSF4	100	82.090	ENSACLG00000010374	cpsf4	100	82.090	Astatotilapia_calliptera
ENSNLEG00000011074	CPSF4	100	85.782	ENSAMXG00000031647	cpsf4	100	84.434	Astyanax_mexicanus
ENSNLEG00000011074	CPSF4	100	98.770	ENSBTAG00000002090	CPSF4	100	98.770	Bos_taurus
ENSNLEG00000011074	CPSF4	100	100.000	ENSCJAG00000015826	CPSF4	100	100.000	Callithrix_jacchus
ENSNLEG00000011074	CPSF4	100	98.113	ENSCAFG00000015036	CPSF4	100	98.113	Canis_familiaris
ENSNLEG00000011074	CPSF4	100	90.521	ENSCAFG00020014462	CPSF4	100	90.521	Canis_lupus_dingo
ENSNLEG00000011074	CPSF4	100	99.052	ENSCHIG00000014313	CPSF4	100	99.052	Capra_hircus
ENSNLEG00000011074	CPSF4	100	90.204	ENSTSYG00000014604	-	100	90.204	Carlito_syrichta
ENSNLEG00000011074	CPSF4	88	92.130	ENSTSYG00000008195	-	99	91.556	Carlito_syrichta
ENSNLEG00000011074	CPSF4	100	99.180	ENSTSYG00000005712	-	100	99.180	Carlito_syrichta
ENSNLEG00000011074	CPSF4	80	95.413	ENSCAPG00000013881	CPSF4	87	95.413	Cavia_aperea
ENSNLEG00000011074	CPSF4	100	99.180	ENSCPOG00000001783	CPSF4	100	99.180	Cavia_porcellus
ENSNLEG00000011074	CPSF4	100	100.000	ENSCCAG00000028291	CPSF4	100	100.000	Cebus_capucinus
ENSNLEG00000011074	CPSF4	100	100.000	ENSCATG00000038440	CPSF4	100	100.000	Cercocebus_atys
ENSNLEG00000011074	CPSF4	100	99.052	ENSCLAG00000007050	CPSF4	100	99.052	Chinchilla_lanigera
ENSNLEG00000011074	CPSF4	100	97.026	ENSCSAG00000017795	CPSF4	100	97.026	Chlorocebus_sabaeus
ENSNLEG00000011074	CPSF4	68	80.723	ENSCPBG00000010269	-	100	80.723	Chrysemys_picta_bellii
ENSNLEG00000011074	CPSF4	80	92.130	ENSCPBG00000020869	CPSF4	100	92.130	Chrysemys_picta_bellii
ENSNLEG00000011074	CPSF4	97	57.031	ENSCING00000021080	-	97	57.812	Ciona_intestinalis
ENSNLEG00000011074	CPSF4	96	54.417	ENSCSAVG00000011469	-	97	53.737	Ciona_savignyi
ENSNLEG00000011074	CPSF4	100	100.000	ENSCANG00000019384	CPSF4	100	100.000	Colobus_angolensis_palliatus
ENSNLEG00000011074	CPSF4	100	99.180	ENSCGRG00001024184	Cpsf4	100	99.180	Cricetulus_griseus_chok1gshd
ENSNLEG00000011074	CPSF4	100	99.052	ENSCGRG00000013892	Cpsf4	100	99.052	Cricetulus_griseus_crigri
ENSNLEG00000011074	CPSF4	100	84.360	ENSCSEG00000019055	cpsf4	100	84.360	Cynoglossus_semilaevis
ENSNLEG00000011074	CPSF4	100	81.579	ENSCVAG00000016528	cpsf4	100	81.579	Cyprinodon_variegatus
ENSNLEG00000011074	CPSF4	100	82.288	ENSDARG00000020217	cpsf4	100	82.288	Danio_rerio
ENSNLEG00000011074	CPSF4	100	96.654	ENSDNOG00000006344	CPSF4	100	96.654	Dasypus_novemcinctus
ENSNLEG00000011074	CPSF4	80	94.931	ENSDORG00000000742	Cpsf4	100	94.931	Dipodomys_ordii
ENSNLEG00000011074	CPSF4	100	54.795	FBgn0015621	Clp	99	53.425	Drosophila_melanogaster
ENSNLEG00000011074	CPSF4	77	100.000	ENSETEG00000002608	CPSF4	70	100.000	Echinops_telfairi
ENSNLEG00000011074	CPSF4	99	70.968	ENSEBUG00000012552	cpsf4	98	70.370	Eptatretus_burgeri
ENSNLEG00000011074	CPSF4	100	99.180	ENSEASG00005002487	CPSF4	100	99.180	Equus_asinus_asinus
ENSNLEG00000011074	CPSF4	100	99.052	ENSECAG00000007525	CPSF4	100	99.052	Equus_caballus
ENSNLEG00000011074	CPSF4	68	100.000	ENSEEUG00000002158	CPSF4	73	100.000	Erinaceus_europaeus
ENSNLEG00000011074	CPSF4	100	80.515	ENSELUG00000011481	cpsf4	100	81.022	Esox_lucius
ENSNLEG00000011074	CPSF4	100	99.052	ENSFCAG00000015070	CPSF4	100	99.052	Felis_catus
ENSNLEG00000011074	CPSF4	68	56.977	ENSFALG00000012906	-	100	56.977	Ficedula_albicollis
ENSNLEG00000011074	CPSF4	100	95.082	ENSFALG00000013799	CPSF4	100	95.082	Ficedula_albicollis
ENSNLEG00000011074	CPSF4	88	97.838	ENSFDAG00000014092	CPSF4	100	97.838	Fukomys_damarensis
ENSNLEG00000011074	CPSF4	100	81.203	ENSFHEG00000010880	cpsf4	100	81.203	Fundulus_heteroclitus
ENSNLEG00000011074	CPSF4	100	80.608	ENSGMOG00000002330	cpsf4	100	80.233	Gadus_morhua
ENSNLEG00000011074	CPSF4	100	95.082	ENSGALG00000004714	CPSF4	100	95.082	Gallus_gallus
ENSNLEG00000011074	CPSF4	99	39.888	ENSGALG00000004441	-	98	38.764	Gallus_gallus
ENSNLEG00000011074	CPSF4	100	80.755	ENSGAFG00000010580	cpsf4	100	80.755	Gambusia_affinis
ENSNLEG00000011074	CPSF4	100	81.102	ENSGACG00000007792	cpsf4	100	82.283	Gasterosteus_aculeatus
ENSNLEG00000011074	CPSF4	75	76.923	ENSGAGG00000020579	-	92	81.212	Gopherus_agassizii
ENSNLEG00000011074	CPSF4	100	92.937	ENSGAGG00000021835	CPSF4	100	92.937	Gopherus_agassizii
ENSNLEG00000011074	CPSF4	100	100.000	ENSGGOG00000015131	CPSF4	100	100.000	Gorilla_gorilla
ENSNLEG00000011074	CPSF4	100	82.090	ENSHBUG00000013699	cpsf4	100	82.090	Haplochromis_burtoni
ENSNLEG00000011074	CPSF4	100	98.578	ENSHGLG00000017150	CPSF4	100	98.578	Heterocephalus_glaber_female
ENSNLEG00000011074	CPSF4	100	70.616	ENSHGLG00100017302	-	100	68.720	Heterocephalus_glaber_male
ENSNLEG00000011074	CPSF4	87	92.373	ENSHGLG00100009215	-	100	96.023	Heterocephalus_glaber_male
ENSNLEG00000011074	CPSF4	100	79.478	ENSHCOG00000004397	cpsf4	100	79.478	Hippocampus_comes
ENSNLEG00000011074	CPSF4	100	81.181	ENSIPUG00000017147	cpsf4	100	81.919	Ictalurus_punctatus
ENSNLEG00000011074	CPSF4	100	99.052	ENSSTOG00000001688	CPSF4	100	99.052	Ictidomys_tridecemlineatus
ENSNLEG00000011074	CPSF4	100	99.052	ENSJJAG00000019426	Cpsf4	100	99.052	Jaculus_jaculus
ENSNLEG00000011074	CPSF4	100	79.775	ENSKMAG00000015642	cpsf4	100	79.851	Kryptolebias_marmoratus
ENSNLEG00000011074	CPSF4	100	64.490	ENSLACG00000018470	-	100	64.490	Latimeria_chalumnae
ENSNLEG00000011074	CPSF4	100	86.667	ENSLACG00000010938	CPSF4	100	86.667	Latimeria_chalumnae
ENSNLEG00000011074	CPSF4	100	86.617	ENSLOCG00000004814	cpsf4	100	86.617	Lepisosteus_oculatus
ENSNLEG00000011074	CPSF4	100	95.911	ENSLAFG00000000159	CPSF4	100	97.516	Loxodonta_africana
ENSNLEG00000011074	CPSF4	100	100.000	ENSMFAG00000001462	CPSF4	100	100.000	Macaca_fascicularis
ENSNLEG00000011074	CPSF4	100	100.000	ENSMMUG00000019191	CPSF4	100	100.000	Macaca_mulatta
ENSNLEG00000011074	CPSF4	100	100.000	ENSMNEG00000032306	CPSF4	100	100.000	Macaca_nemestrina
ENSNLEG00000011074	CPSF4	100	100.000	ENSMLEG00000034721	CPSF4	100	100.000	Mandrillus_leucophaeus
ENSNLEG00000011074	CPSF4	100	81.955	ENSMAMG00000006244	cpsf4	100	81.955	Mastacembelus_armatus
ENSNLEG00000011074	CPSF4	100	82.090	ENSMZEG00005007515	cpsf4	100	82.090	Maylandia_zebra
ENSNLEG00000011074	CPSF4	86	94.762	ENSMGAG00000004235	CPSF4	100	94.762	Meleagris_gallopavo
ENSNLEG00000011074	CPSF4	100	99.052	ENSMAUG00000021253	Cpsf4	100	99.052	Mesocricetus_auratus
ENSNLEG00000011074	CPSF4	100	99.526	ENSMICG00000017429	CPSF4	100	99.526	Microcebus_murinus
ENSNLEG00000011074	CPSF4	100	99.052	ENSMOCG00000014901	Cpsf4	100	99.052	Microtus_ochrogaster
ENSNLEG00000011074	CPSF4	100	85.308	ENSMMOG00000001813	cpsf4	100	85.308	Mola_mola
ENSNLEG00000011074	CPSF4	100	94.796	ENSMODG00000001367	CPSF4	100	94.796	Monodelphis_domestica
ENSNLEG00000011074	CPSF4	100	81.648	ENSMALG00000012611	cpsf4	100	81.648	Monopterus_albus
ENSNLEG00000011074	CPSF4	100	99.180	MGP_CAROLIEiJ_G0028012	Cpsf4	100	99.180	Mus_caroli
ENSNLEG00000011074	CPSF4	100	99.180	ENSMUSG00000029625	Cpsf4	100	99.180	Mus_musculus
ENSNLEG00000011074	CPSF4	100	99.180	MGP_PahariEiJ_G0024581	Cpsf4	100	99.180	Mus_pahari
ENSNLEG00000011074	CPSF4	100	99.590	MGP_SPRETEiJ_G0029013	Cpsf4	100	99.590	Mus_spretus
ENSNLEG00000011074	CPSF4	100	96.283	ENSMPUG00000016508	CPSF4	100	96.283	Mustela_putorius_furo
ENSNLEG00000011074	CPSF4	86	98.095	ENSMLUG00000010980	CPSF4	100	98.095	Myotis_lucifugus
ENSNLEG00000011074	CPSF4	100	98.578	ENSNGAG00000001567	Cpsf4	100	98.578	Nannospalax_galili
ENSNLEG00000011074	CPSF4	91	81.557	ENSNBRG00000003943	cpsf4	98	81.557	Neolamprologus_brichardi
ENSNLEG00000011074	CPSF4	100	94.796	ENSMEUG00000006955	CPSF4	100	94.796	Notamacropus_eugenii
ENSNLEG00000011074	CPSF4	100	95.911	ENSOPRG00000013663	CPSF4	100	95.911	Ochotona_princeps
ENSNLEG00000011074	CPSF4	100	99.052	ENSODEG00000011181	-	100	99.052	Octodon_degus
ENSNLEG00000011074	CPSF4	100	74.717	ENSODEG00000009779	-	100	74.717	Octodon_degus
ENSNLEG00000011074	CPSF4	98	84.583	ENSODEG00000018283	-	91	84.583	Octodon_degus
ENSNLEG00000011074	CPSF4	100	82.090	ENSONIG00000008495	cpsf4	100	82.090	Oreochromis_niloticus
ENSNLEG00000011074	CPSF4	100	54.676	ENSOANG00000009568	-	100	53.237	Ornithorhynchus_anatinus
ENSNLEG00000011074	CPSF4	87	92.766	ENSOANG00000007729	CPSF4	100	92.766	Ornithorhynchus_anatinus
ENSNLEG00000011074	CPSF4	100	95.911	ENSOCUG00000002437	CPSF4	70	95.911	Oryctolagus_cuniculus
ENSNLEG00000011074	CPSF4	100	81.955	ENSORLG00000022798	cpsf4	100	81.955	Oryzias_latipes
ENSNLEG00000011074	CPSF4	100	81.955	ENSORLG00020008548	cpsf4	100	81.955	Oryzias_latipes_hni
ENSNLEG00000011074	CPSF4	100	81.579	ENSORLG00015019575	cpsf4	100	81.579	Oryzias_latipes_hsok
ENSNLEG00000011074	CPSF4	100	83.886	ENSOMEG00000005176	cpsf4	100	83.886	Oryzias_melastigma
ENSNLEG00000011074	CPSF4	100	96.654	ENSOGAG00000010884	CPSF4	100	96.654	Otolemur_garnettii
ENSNLEG00000011074	CPSF4	100	85.348	ENSOARG00000018668	CPSF4	100	84.982	Ovis_aries
ENSNLEG00000011074	CPSF4	100	99.526	ENSPPAG00000043355	CPSF4	100	99.526	Pan_paniscus
ENSNLEG00000011074	CPSF4	100	99.052	ENSPPRG00000003134	CPSF4	100	99.052	Panthera_pardus
ENSNLEG00000011074	CPSF4	87	98.913	ENSPTIG00000005604	CPSF4	87	98.913	Panthera_tigris_altaica
ENSNLEG00000011074	CPSF4	100	99.526	ENSPTRG00000019453	CPSF4	100	99.526	Pan_troglodytes
ENSNLEG00000011074	CPSF4	100	100.000	ENSPANG00000023123	CPSF4	100	100.000	Papio_anubis
ENSNLEG00000011074	CPSF4	100	82.847	ENSPKIG00000014278	cpsf4	100	82.847	Paramormyrops_kingsleyae
ENSNLEG00000011074	CPSF4	79	65.306	ENSPSIG00000018198	-	100	64.767	Pelodiscus_sinensis
ENSNLEG00000011074	CPSF4	80	91.667	ENSPSIG00000011229	CPSF4	100	91.667	Pelodiscus_sinensis
ENSNLEG00000011074	CPSF4	100	80.328	ENSPMGG00000017735	cpsf4	100	78.862	Periophthalmus_magnuspinnatus
ENSNLEG00000011074	CPSF4	100	99.052	ENSPEMG00000004508	Cpsf4	100	99.052	Peromyscus_maniculatus_bairdii
ENSNLEG00000011074	CPSF4	100	94.796	ENSPCIG00000024776	CPSF4	100	94.796	Phascolarctos_cinereus
ENSNLEG00000011074	CPSF4	100	80.755	ENSPFOG00000014912	cpsf4	100	80.755	Poecilia_formosa
ENSNLEG00000011074	CPSF4	100	79.675	ENSPLAG00000009599	cpsf4	100	78.862	Poecilia_latipinna
ENSNLEG00000011074	CPSF4	100	80.755	ENSPMEG00000009790	cpsf4	100	80.755	Poecilia_mexicana
ENSNLEG00000011074	CPSF4	100	80.000	ENSPREG00000018166	cpsf4	100	79.087	Poecilia_reticulata
ENSNLEG00000011074	CPSF4	87	95.726	ENSPPYG00000017378	CPSF4	100	95.726	Pongo_abelii
ENSNLEG00000011074	CPSF4	100	95.167	ENSPCAG00000001892	CPSF4	100	95.167	Procavia_capensis
ENSNLEG00000011074	CPSF4	100	99.052	ENSPCOG00000012771	CPSF4	100	99.052	Propithecus_coquereli
ENSNLEG00000011074	CPSF4	100	89.591	ENSPVAG00000007531	CPSF4	100	89.591	Pteropus_vampyrus
ENSNLEG00000011074	CPSF4	100	82.090	ENSPNYG00000018559	cpsf4	100	82.090	Pundamilia_nyererei
ENSNLEG00000011074	CPSF4	100	84.074	ENSPNAG00000003736	cpsf4	100	84.074	Pygocentrus_nattereri
ENSNLEG00000011074	CPSF4	100	99.052	ENSRNOG00000000985	Cpsf4	100	99.052	Rattus_norvegicus
ENSNLEG00000011074	CPSF4	87	96.581	ENSRBIG00000033886	CPSF4	100	100.000	Rhinopithecus_bieti
ENSNLEG00000011074	CPSF4	100	100.000	ENSRROG00000040431	CPSF4	100	100.000	Rhinopithecus_roxellana
ENSNLEG00000011074	CPSF4	100	100.000	ENSSBOG00000020493	CPSF4	100	100.000	Saimiri_boliviensis_boliviensis
ENSNLEG00000011074	CPSF4	100	94.796	ENSSHAG00000011533	CPSF4	100	94.796	Sarcophilus_harrisii
ENSNLEG00000011074	CPSF4	100	83.333	ENSSFOG00015007883	cpsf4	100	83.333	Scleropages_formosus
ENSNLEG00000011074	CPSF4	100	86.235	ENSSMAG00000006374	cpsf4	100	86.235	Scophthalmus_maximus
ENSNLEG00000011074	CPSF4	100	82.022	ENSSDUG00000018887	cpsf4	100	82.022	Seriola_dumerili
ENSNLEG00000011074	CPSF4	100	82.022	ENSSLDG00000019078	cpsf4	100	82.022	Seriola_lalandi_dorsalis
ENSNLEG00000011074	CPSF4	87	96.154	ENSSARG00000012416	CPSF4	100	96.154	Sorex_araneus
ENSNLEG00000011074	CPSF4	100	91.450	ENSSPUG00000003549	CPSF4	100	91.450	Sphenodon_punctatus
ENSNLEG00000011074	CPSF4	95	64.807	ENSSPUG00000014803	-	97	64.135	Sphenodon_punctatus
ENSNLEG00000011074	CPSF4	100	87.295	ENSSPAG00000006174	cpsf4	100	87.295	Stegastes_partitus
ENSNLEG00000011074	CPSF4	100	99.590	ENSSSCG00000026896	CPSF4	100	99.590	Sus_scrofa
ENSNLEG00000011074	CPSF4	100	93.902	ENSTGUG00000007552	CPSF4	100	93.902	Taeniopygia_guttata
ENSNLEG00000011074	CPSF4	100	79.323	ENSTRUG00000024220	cpsf4	100	79.323	Takifugu_rubripes
ENSNLEG00000011074	CPSF4	100	78.868	ENSTNIG00000006265	cpsf4	100	79.699	Tetraodon_nigroviridis
ENSNLEG00000011074	CPSF4	87	86.752	ENSTBEG00000011406	CPSF4	100	86.752	Tupaia_belangeri
ENSNLEG00000011074	CPSF4	100	78.810	ENSTTRG00000003007	CPSF4	100	78.810	Tursiops_truncatus
ENSNLEG00000011074	CPSF4	91	98.649	ENSUAMG00000008051	CPSF4	85	98.649	Ursus_americanus
ENSNLEG00000011074	CPSF4	100	98.770	ENSUMAG00000009474	CPSF4	100	98.770	Ursus_maritimus
ENSNLEG00000011074	CPSF4	100	98.770	ENSVVUG00000008824	CPSF4	100	98.770	Vulpes_vulpes
ENSNLEG00000011074	CPSF4	100	85.305	ENSXETG00000009892	cpsf4	100	85.305	Xenopus_tropicalis
ENSNLEG00000011074	CPSF4	99	61.654	ENSXETG00000004641	cpsf4l	99	61.278	Xenopus_tropicalis
ENSNLEG00000011074	CPSF4	100	83.886	ENSXCOG00000016040	cpsf4	100	83.886	Xiphophorus_couchianus
ENSNLEG00000011074	CPSF4	100	80.755	ENSXMAG00000024670	cpsf4	100	80.755	Xiphophorus_maculatus