EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSNLEG00000012058 (Gene tree)
Gene ID: 100590240
Gene Symbol: UPF2
Alias: DKFZP434D222|KIAA1408|RENT2|smg-3
Full Name: UPF2%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Nomascus_leucogenys
Status: putative
Strand: Plus strand
Length: 130466 bases
Position: chr9:106143606-106274071
Accession: 100590240
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNLEP00000014673	Upf2	PF04050.14	7.1e-33	1	1
ENSNLEP00000046738	Upf2	PF04050.14	1.1e-32	1	1
ENSNLEP00000046738	MIF4G	PF02854.19	4.2e-81	1	3
ENSNLEP00000046738	MIF4G	PF02854.19	4.2e-81	2	3
ENSNLEP00000046738	MIF4G	PF02854.19	4.2e-81	3	3
ENSNLEP00000014673	MIF4G	PF02854.19	4.5e-81	1	3
ENSNLEP00000014673	MIF4G	PF02854.19	4.5e-81	2	3
ENSNLEP00000014673	MIF4G	PF02854.19	4.5e-81	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNLET00000057952	UPF2-202	3753	-	ENSNLEP00000046738	1250 (aa)	-	A0A2I3HT11
ENSNLET00000015408	UPF2-201	5561	XM_003257637	ENSNLEP00000014673	1272 (aa)	XP_003257685	G1RN59

Gene Model

Click here to download ENSNLEG00000012058's gene model file

Pathways

Pathway ID	Pathway Name	Source
nle03013	RNA transport	KEGG
nle03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSNLEG00000012058's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNLEG00000012058	UPF2	100	99.528	ENSG00000151461	UPF2	100	99.528	Homo_sapiens
ENSNLEG00000012058	UPF2	100	77.663	ENSAPOG00000015837	UPF2	100	78.247	Acanthochromis_polyacanthus
ENSNLEG00000012058	UPF2	100	97.720	ENSAMEG00000004586	UPF2	100	97.720	Ailuropoda_melanoleuca
ENSNLEG00000012058	UPF2	99	82.514	ENSACIG00000018078	UPF2	100	82.436	Amphilophus_citrinellus
ENSNLEG00000012058	UPF2	100	82.541	ENSAOCG00000016766	UPF2	100	82.619	Amphiprion_ocellaris
ENSNLEG00000012058	UPF2	100	82.619	ENSAPEG00000019084	UPF2	100	82.697	Amphiprion_percula
ENSNLEG00000012058	UPF2	100	82.362	ENSATEG00000021677	UPF2	99	82.568	Anabas_testudineus
ENSNLEG00000012058	UPF2	100	86.557	ENSAPLG00000010287	UPF2	100	86.085	Anas_platyrhynchos
ENSNLEG00000012058	UPF2	100	92.138	ENSACAG00000009259	UPF2	100	92.138	Anolis_carolinensis
ENSNLEG00000012058	UPF2	99	88.443	ENSANAG00000028451	UPF2	99	87.107	Aotus_nancymaae
ENSNLEG00000012058	UPF2	100	80.904	ENSACLG00000012696	UPF2	100	82.619	Astatotilapia_calliptera
ENSNLEG00000012058	UPF2	99	82.408	ENSAMXG00000013700	UPF2	99	82.799	Astyanax_mexicanus
ENSNLEG00000012058	UPF2	100	97.642	ENSBTAG00000000288	UPF2	100	97.642	Bos_taurus
ENSNLEG00000012058	UPF2	100	99.057	ENSCJAG00000020685	UPF2	100	99.057	Callithrix_jacchus
ENSNLEG00000012058	UPF2	100	97.720	ENSCAFG00000004839	UPF2	100	97.720	Canis_familiaris
ENSNLEG00000012058	UPF2	100	96.725	ENSCAFG00020005882	UPF2	100	96.725	Canis_lupus_dingo
ENSNLEG00000012058	UPF2	100	97.720	ENSCHIG00000020359	UPF2	100	97.720	Capra_hircus
ENSNLEG00000012058	UPF2	100	97.877	ENSTSYG00000000935	UPF2	100	97.877	Carlito_syrichta
ENSNLEG00000012058	UPF2	91	87.188	ENSCAPG00000016658	UPF2	100	86.204	Cavia_aperea
ENSNLEG00000012058	UPF2	99	94.057	ENSCPOG00000008809	UPF2	99	94.849	Cavia_porcellus
ENSNLEG00000012058	UPF2	100	93.632	ENSCCAG00000035991	UPF2	100	93.632	Cebus_capucinus
ENSNLEG00000012058	UPF2	100	99.607	ENSCATG00000032679	UPF2	100	99.607	Cercocebus_atys
ENSNLEG00000012058	UPF2	100	97.091	ENSCLAG00000011434	UPF2	100	97.091	Chinchilla_lanigera
ENSNLEG00000012058	UPF2	100	99.686	ENSCSAG00000013372	UPF2	100	99.686	Chlorocebus_sabaeus
ENSNLEG00000012058	UPF2	87	99.330	ENSCHOG00000000422	UPF2	89	99.330	Choloepus_hoffmanni
ENSNLEG00000012058	UPF2	99	92.677	ENSCPBG00000027823	UPF2	100	92.520	Chrysemys_picta_bellii
ENSNLEG00000012058	UPF2	79	49.062	ENSCSAVG00000007772	-	79	50.573	Ciona_savignyi
ENSNLEG00000012058	UPF2	100	94.458	ENSCANG00000040396	UPF2	100	94.458	Colobus_angolensis_palliatus
ENSNLEG00000012058	UPF2	100	97.484	ENSCGRG00001019347	Upf2	100	97.484	Cricetulus_griseus_chok1gshd
ENSNLEG00000012058	UPF2	100	97.484	ENSCGRG00000017993	Upf2	100	97.484	Cricetulus_griseus_crigri
ENSNLEG00000012058	UPF2	91	80.637	ENSCSEG00000003520	UPF2	99	77.813	Cynoglossus_semilaevis
ENSNLEG00000012058	UPF2	99	82.104	ENSCVAG00000006167	UPF2	100	81.868	Cyprinodon_variegatus
ENSNLEG00000012058	UPF2	100	97.720	ENSDNOG00000018160	UPF2	100	97.720	Dasypus_novemcinctus
ENSNLEG00000012058	UPF2	100	96.934	ENSDORG00000002478	Upf2	100	96.934	Dipodomys_ordii
ENSNLEG00000012058	UPF2	89	36.439	FBgn0029992	Upf2	82	43.860	Drosophila_melanogaster
ENSNLEG00000012058	UPF2	72	100.000	ENSETEG00000011583	-	72	100.000	Echinops_telfairi
ENSNLEG00000012058	UPF2	66	72.483	ENSEBUG00000012448	-	87	72.483	Eptatretus_burgeri
ENSNLEG00000012058	UPF2	100	97.720	ENSEASG00005019274	UPF2	100	99.074	Equus_asinus_asinus
ENSNLEG00000012058	UPF2	100	97.799	ENSECAG00000017022	UPF2	100	97.799	Equus_caballus
ENSNLEG00000012058	UPF2	82	94.888	ENSEEUG00000007819	UPF2	82	94.888	Erinaceus_europaeus
ENSNLEG00000012058	UPF2	99	81.577	ENSELUG00000012014	UPF2	100	81.910	Esox_lucius
ENSNLEG00000012058	UPF2	100	99.448	ENSFCAG00000005785	UPF2	100	97.563	Felis_catus
ENSNLEG00000012058	UPF2	100	91.274	ENSFALG00000001889	UPF2	98	93.082	Ficedula_albicollis
ENSNLEG00000012058	UPF2	100	97.013	ENSFDAG00000014348	UPF2	100	97.013	Fukomys_damarensis
ENSNLEG00000012058	UPF2	99	82.339	ENSFHEG00000009826	UPF2	100	82.233	Fundulus_heteroclitus
ENSNLEG00000012058	UPF2	91	84.024	ENSGMOG00000005557	UPF2	100	80.265	Gadus_morhua
ENSNLEG00000012058	UPF2	100	93.244	ENSGALG00000033772	UPF2	100	93.244	Gallus_gallus
ENSNLEG00000012058	UPF2	92	84.569	ENSGAFG00000020867	UPF2	100	81.528	Gambusia_affinis
ENSNLEG00000012058	UPF2	90	84.469	ENSGACG00000001080	UPF2	100	82.279	Gasterosteus_aculeatus
ENSNLEG00000012058	UPF2	100	92.846	ENSGAGG00000002700	UPF2	100	92.846	Gopherus_agassizii
ENSNLEG00000012058	UPF2	100	99.450	ENSGGOG00000001479	UPF2	100	99.450	Gorilla_gorilla
ENSNLEG00000012058	UPF2	100	80.748	ENSHBUG00000004249	UPF2	100	82.592	Haplochromis_burtoni
ENSNLEG00000012058	UPF2	99	85.681	ENSHGLG00000003822	-	99	84.815	Heterocephalus_glaber_female
ENSNLEG00000012058	UPF2	100	97.013	ENSHGLG00000015176	-	100	97.013	Heterocephalus_glaber_female
ENSNLEG00000012058	UPF2	99	92.835	ENSHGLG00100010036	UPF2	100	93.543	Heterocephalus_glaber_male
ENSNLEG00000012058	UPF2	100	80.512	ENSHCOG00000004025	UPF2	99	80.512	Hippocampus_comes
ENSNLEG00000012058	UPF2	100	81.528	ENSIPUG00000015524	UPF2	100	81.825	Ictalurus_punctatus
ENSNLEG00000012058	UPF2	100	97.406	ENSSTOG00000013075	UPF2	100	97.406	Ictidomys_tridecemlineatus
ENSNLEG00000012058	UPF2	100	96.384	ENSJJAG00000004913	Upf2	100	96.384	Jaculus_jaculus
ENSNLEG00000012058	UPF2	99	82.003	ENSKMAG00000001071	UPF2	100	82.275	Kryptolebias_marmoratus
ENSNLEG00000012058	UPF2	81	82.139	ENSLBEG00000000728	-	93	82.237	Labrus_bergylta
ENSNLEG00000012058	UPF2	100	82.686	ENSLBEG00000016394	-	99	82.737	Labrus_bergylta
ENSNLEG00000012058	UPF2	99	77.682	ENSLACG00000015945	UPF2	100	79.170	Latimeria_chalumnae
ENSNLEG00000012058	UPF2	99	84.646	ENSLOCG00000015698	UPF2	100	85.984	Lepisosteus_oculatus
ENSNLEG00000012058	UPF2	100	99.528	ENSMFAG00000043865	UPF2	100	99.528	Macaca_fascicularis
ENSNLEG00000012058	UPF2	100	99.528	ENSMMUG00000008241	UPF2	100	99.528	Macaca_mulatta
ENSNLEG00000012058	UPF2	82	99.122	ENSMNEG00000008062	UPF2	100	99.122	Macaca_nemestrina
ENSNLEG00000012058	UPF2	100	97.623	ENSMLEG00000036120	UPF2	100	99.758	Mandrillus_leucophaeus
ENSNLEG00000012058	UPF2	100	82.207	ENSMAMG00000018276	UPF2	100	82.335	Mastacembelus_armatus
ENSNLEG00000012058	UPF2	100	80.904	ENSMZEG00005021595	UPF2	100	82.619	Maylandia_zebra
ENSNLEG00000012058	UPF2	99	92.610	ENSMGAG00000004573	UPF2	99	92.610	Meleagris_gallopavo
ENSNLEG00000012058	UPF2	100	95.126	ENSMAUG00000016512	Upf2	100	95.126	Mesocricetus_auratus
ENSNLEG00000012058	UPF2	100	94.000	ENSMICG00000001716	UPF2	100	94.000	Microcebus_murinus
ENSNLEG00000012058	UPF2	100	96.855	ENSMOCG00000008263	Upf2	100	96.855	Microtus_ochrogaster
ENSNLEG00000012058	UPF2	99	79.938	ENSMMOG00000006528	UPF2	100	80.203	Mola_mola
ENSNLEG00000012058	UPF2	100	95.362	ENSMODG00000016794	UPF2	100	95.362	Monodelphis_domestica
ENSNLEG00000012058	UPF2	99	82.109	ENSMALG00000002663	UPF2	100	82.081	Monopterus_albus
ENSNLEG00000012058	UPF2	100	97.091	MGP_CAROLIEiJ_G0023157	Upf2	100	98.286	Mus_caroli
ENSNLEG00000012058	UPF2	100	97.091	ENSMUSG00000043241	Upf2	100	97.091	Mus_musculus
ENSNLEG00000012058	UPF2	100	96.698	MGP_PahariEiJ_G0019217	Upf2	100	97.333	Mus_pahari
ENSNLEG00000012058	UPF2	100	97.327	MGP_SPRETEiJ_G0024075	Upf2	100	97.714	Mus_spretus
ENSNLEG00000012058	UPF2	100	97.720	ENSMPUG00000001064	UPF2	100	97.720	Mustela_putorius_furo
ENSNLEG00000012058	UPF2	99	97.017	ENSMLUG00000000228	UPF2	100	97.017	Myotis_lucifugus
ENSNLEG00000012058	UPF2	100	80.904	ENSNBRG00000013629	UPF2	100	82.619	Neolamprologus_brichardi
ENSNLEG00000012058	UPF2	62	97.927	ENSMEUG00000002180	-	60	97.927	Notamacropus_eugenii
ENSNLEG00000012058	UPF2	76	100.000	ENSOPRG00000006801	-	78	100.000	Ochotona_princeps
ENSNLEG00000012058	UPF2	100	96.541	ENSODEG00000001290	UPF2	100	96.541	Octodon_degus
ENSNLEG00000012058	UPF2	100	80.982	ENSONIG00000017991	UPF2	100	82.697	Oreochromis_niloticus
ENSNLEG00000012058	UPF2	99	96.946	ENSOCUG00000006230	UPF2	100	96.946	Oryctolagus_cuniculus
ENSNLEG00000012058	UPF2	100	81.182	ENSORLG00000017189	UPF2	100	81.917	Oryzias_latipes
ENSNLEG00000012058	UPF2	100	81.182	ENSORLG00020005969	UPF2	100	81.917	Oryzias_latipes_hni
ENSNLEG00000012058	UPF2	100	81.182	ENSORLG00015005713	UPF2	100	81.917	Oryzias_latipes_hsok
ENSNLEG00000012058	UPF2	99	77.631	ENSOMEG00000023420	UPF2	98	78.984	Oryzias_melastigma
ENSNLEG00000012058	UPF2	100	98.428	ENSOGAG00000005796	UPF2	100	98.428	Otolemur_garnettii
ENSNLEG00000012058	UPF2	100	97.567	ENSOARG00000014587	UPF2	100	97.567	Ovis_aries
ENSNLEG00000012058	UPF2	100	96.910	ENSPPAG00000037953	UPF2	100	96.910	Pan_paniscus
ENSNLEG00000012058	UPF2	100	97.563	ENSPPRG00000000690	UPF2	100	97.563	Panthera_pardus
ENSNLEG00000012058	UPF2	100	97.563	ENSPTIG00000008867	UPF2	100	97.563	Panthera_tigris_altaica
ENSNLEG00000012058	UPF2	100	99.450	ENSPTRG00000002291	UPF2	100	99.450	Pan_troglodytes
ENSNLEG00000012058	UPF2	100	99.528	ENSPANG00000023399	UPF2	100	99.528	Papio_anubis
ENSNLEG00000012058	UPF2	100	80.655	ENSPKIG00000025502	UPF2	100	81.917	Paramormyrops_kingsleyae
ENSNLEG00000012058	UPF2	60	91.247	ENSPSIG00000015158	UPF2	95	91.247	Pelodiscus_sinensis
ENSNLEG00000012058	UPF2	99	79.592	ENSPMGG00000005259	UPF2	100	80.377	Periophthalmus_magnuspinnatus
ENSNLEG00000012058	UPF2	93	94.477	ENSPEMG00000015731	Upf2	99	94.477	Peromyscus_maniculatus_bairdii
ENSNLEG00000012058	UPF2	100	93.003	ENSPCIG00000006656	UPF2	100	95.047	Phascolarctos_cinereus
ENSNLEG00000012058	UPF2	100	79.813	ENSPFOG00000017118	UPF2	100	81.839	Poecilia_formosa
ENSNLEG00000012058	UPF2	100	79.813	ENSPLAG00000005094	UPF2	100	81.839	Poecilia_latipinna
ENSNLEG00000012058	UPF2	100	79.813	ENSPMEG00000017009	UPF2	100	81.839	Poecilia_mexicana
ENSNLEG00000012058	UPF2	99	79.577	ENSPREG00000021880	UPF2	100	82.003	Poecilia_reticulata
ENSNLEG00000012058	UPF2	66	99.641	ENSPPYG00000002089	-	100	99.641	Pongo_abelii
ENSNLEG00000012058	UPF2	100	83.333	ENSPCAG00000000684	UPF2	100	83.333	Procavia_capensis
ENSNLEG00000012058	UPF2	100	97.040	ENSPCOG00000021656	UPF2	100	97.040	Propithecus_coquereli
ENSNLEG00000012058	UPF2	100	90.024	ENSPVAG00000017286	UPF2	100	90.024	Pteropus_vampyrus
ENSNLEG00000012058	UPF2	99	78.454	ENSPNYG00000017096	UPF2	100	80.172	Pundamilia_nyererei
ENSNLEG00000012058	UPF2	100	82.619	ENSPNAG00000009357	UPF2	100	83.087	Pygocentrus_nattereri
ENSNLEG00000012058	UPF2	99	90.745	ENSRNOG00000023593	Upf2	100	100.000	Rattus_norvegicus
ENSNLEG00000012058	UPF2	99	98.425	ENSRBIG00000037780	UPF2	100	98.425	Rhinopithecus_bieti
ENSNLEG00000012058	UPF2	100	99.450	ENSRROG00000043547	UPF2	100	99.450	Rhinopithecus_roxellana
ENSNLEG00000012058	UPF2	100	98.742	ENSSBOG00000020012	UPF2	100	98.742	Saimiri_boliviensis_boliviensis
ENSNLEG00000012058	UPF2	100	81.698	ENSSFOG00015023788	upf2	100	82.788	Scleropages_formosus
ENSNLEG00000012058	UPF2	90	82.914	ENSSMAG00000007637	UPF2	100	80.078	Scophthalmus_maximus
ENSNLEG00000012058	UPF2	100	82.229	ENSSDUG00000017244	UPF2	99	82.697	Seriola_dumerili
ENSNLEG00000012058	UPF2	100	80.397	ENSSLDG00000016866	UPF2	100	81.064	Seriola_lalandi_dorsalis
ENSNLEG00000012058	UPF2	100	95.362	ENSSARG00000008615	UPF2	100	95.362	Sorex_araneus
ENSNLEG00000012058	UPF2	99	90.008	ENSSPUG00000014544	UPF2	99	90.008	Sphenodon_punctatus
ENSNLEG00000012058	UPF2	68	98.849	ENSSSCG00000011117	-	100	98.849	Sus_scrofa
ENSNLEG00000012058	UPF2	99	91.253	ENSTGUG00000002163	-	100	93.065	Taeniopygia_guttata
ENSNLEG00000012058	UPF2	100	81.712	ENSTRUG00000007519	UPF2	99	82.073	Takifugu_rubripes
ENSNLEG00000012058	UPF2	100	80.031	ENSTNIG00000004453	UPF2	100	79.922	Tetraodon_nigroviridis
ENSNLEG00000012058	UPF2	93	90.355	ENSTBEG00000012679	UPF2	93	90.694	Tupaia_belangeri
ENSNLEG00000012058	UPF2	100	97.642	ENSTTRG00000016388	UPF2	100	97.642	Tursiops_truncatus
ENSNLEG00000012058	UPF2	100	94.400	ENSUAMG00000023560	UPF2	99	100.000	Ursus_americanus
ENSNLEG00000012058	UPF2	100	97.956	ENSUMAG00000012953	UPF2	95	97.956	Ursus_maritimus
ENSNLEG00000012058	UPF2	86	96.774	ENSVPAG00000006763	UPF2	85	96.774	Vicugna_pacos
ENSNLEG00000012058	UPF2	100	97.642	ENSVVUG00000006166	UPF2	100	97.642	Vulpes_vulpes
ENSNLEG00000012058	UPF2	100	83.450	ENSXETG00000033103	UPF2	91	89.014	Xenopus_tropicalis
ENSNLEG00000012058	UPF2	92	84.372	ENSXCOG00000011604	UPF2	100	81.499	Xiphophorus_couchianus
ENSNLEG00000012058	UPF2	92	84.655	ENSXMAG00000017209	UPF2	100	81.528	Xiphophorus_maculatus