EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSNLEG00000012263 (Gene tree)
Gene ID: 100588925
Gene Symbol: SND1
Alias: TDRD11|p100
Full Name: staphylococcal nuclease and tudor domain containing 1
Gene Type: protein_coding
Species: Nomascus_leucogenys
Status: putative
Strand: Plus strand
Length: 451962 bases
Position: chr13:78934885-79386846
Accession: 100588925
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNLEP00000045145	TUDOR	PF00567.24	1.6e-27	1	1
ENSNLEP00000014929	TUDOR	PF00567.24	1.6e-27	1	1
ENSNLEP00000045145	SNase	PF00565.17	1.5e-69	1	5
ENSNLEP00000045145	SNase	PF00565.17	1.5e-69	2	5
ENSNLEP00000045145	SNase	PF00565.17	1.5e-69	3	5
ENSNLEP00000045145	SNase	PF00565.17	1.5e-69	4	5
ENSNLEP00000045145	SNase	PF00565.17	1.5e-69	5	5
ENSNLEP00000014929	SNase	PF00565.17	1.8e-69	1	5
ENSNLEP00000014929	SNase	PF00565.17	1.8e-69	2	5
ENSNLEP00000014929	SNase	PF00565.17	1.8e-69	3	5
ENSNLEP00000014929	SNase	PF00565.17	1.8e-69	4	5
ENSNLEP00000014929	SNase	PF00565.17	1.8e-69	5	5
ENSNLEP00000041838	SNase	PF00565.17	1.5e-48	1	3
ENSNLEP00000041838	SNase	PF00565.17	1.5e-48	2	3
ENSNLEP00000041838	SNase	PF00565.17	1.5e-48	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNLET00000015675	SND1-201	3732	XM_003261285	ENSNLEP00000014929	910 (aa)	XP_003261333	G1RNW5
ENSNLET00000034508	SND1-203	2658	-	ENSNLEP00000045145	885 (aa)	-	A0A2I3HNQ9
ENSNLET00000051695	SND1-202	1809	-	ENSNLEP00000041838	602 (aa)	-	A0A2I3HDV5

Gene Model

Click here to download ENSNLEG00000012263's gene model file

Pathways

Pathway ID	Pathway Name	Source
nle05203	Viral carcinogenesis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSNLEG00000012263's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNLEG00000012263	SND1	100	99.887	ENSG00000197157	SND1	100	99.670	Homo_sapiens
ENSNLEG00000012263	SND1	100	85.006	ENSAPOG00000017599	snd1	100	83.882	Acanthochromis_polyacanthus
ENSNLEG00000012263	SND1	100	98.873	ENSAMEG00000004664	SND1	94	98.684	Ailuropoda_melanoleuca
ENSNLEG00000012263	SND1	100	82.167	ENSACIG00000003551	snd1	100	81.229	Amphilophus_citrinellus
ENSNLEG00000012263	SND1	100	84.780	ENSAOCG00000014166	snd1	100	83.662	Amphiprion_ocellaris
ENSNLEG00000012263	SND1	100	84.780	ENSAPEG00000007067	snd1	100	83.662	Amphiprion_percula
ENSNLEG00000012263	SND1	96	87.868	ENSATEG00000018475	snd1	89	83.017	Anabas_testudineus
ENSNLEG00000012263	SND1	100	99.322	ENSANAG00000034463	SND1	100	99.231	Aotus_nancymaae
ENSNLEG00000012263	SND1	100	84.442	ENSACLG00000022897	snd1	99	83.516	Astatotilapia_calliptera
ENSNLEG00000012263	SND1	100	85.039	ENSAMXG00000016318	snd1	99	84.378	Astyanax_mexicanus
ENSNLEG00000012263	SND1	100	98.870	ENSBTAG00000010692	SND1	100	98.791	Bos_taurus
ENSNLEG00000012263	SND1	97	52.041	WBGene00006626	tsn-1	98	47.368	Caenorhabditis_elegans
ENSNLEG00000012263	SND1	100	99.096	ENSCJAG00000017668	SND1	100	99.011	Callithrix_jacchus
ENSNLEG00000012263	SND1	100	99.322	ENSCAFG00000001700	SND1	100	99.121	Canis_familiaris
ENSNLEG00000012263	SND1	100	99.322	ENSCAFG00020021639	SND1	100	99.121	Canis_lupus_dingo
ENSNLEG00000012263	SND1	100	99.209	ENSCHIG00000023390	SND1	100	99.121	Capra_hircus
ENSNLEG00000012263	SND1	96	99.471	ENSTSYG00000004979	SND1	97	99.471	Carlito_syrichta
ENSNLEG00000012263	SND1	99	85.440	ENSCAPG00000010677	SND1	98	84.667	Cavia_aperea
ENSNLEG00000012263	SND1	99	99.325	ENSCPOG00000006251	SND1	100	98.022	Cavia_porcellus
ENSNLEG00000012263	SND1	100	99.435	ENSCCAG00000036847	SND1	100	99.341	Cebus_capucinus
ENSNLEG00000012263	SND1	100	99.774	ENSCATG00000035214	SND1	100	99.670	Cercocebus_atys
ENSNLEG00000012263	SND1	100	98.305	ENSCLAG00000011796	SND1	99	99.157	Chinchilla_lanigera
ENSNLEG00000012263	SND1	100	99.774	ENSCSAG00000010182	SND1	100	99.670	Chlorocebus_sabaeus
ENSNLEG00000012263	SND1	80	89.216	ENSCHOG00000002218	SND1	86	89.216	Choloepus_hoffmanni
ENSNLEG00000012263	SND1	100	93.333	ENSCPBG00000018094	SND1	100	92.198	Chrysemys_picta_bellii
ENSNLEG00000012263	SND1	96	61.880	ENSCING00000000524	-	98	57.143	Ciona_intestinalis
ENSNLEG00000012263	SND1	98	62.944	ENSCSAVG00000008807	-	99	58.306	Ciona_savignyi
ENSNLEG00000012263	SND1	100	99.774	ENSCANG00000035119	SND1	100	99.670	Colobus_angolensis_palliatus
ENSNLEG00000012263	SND1	100	97.288	ENSCGRG00001022514	Snd1	100	97.143	Cricetulus_griseus_chok1gshd
ENSNLEG00000012263	SND1	99	97.285	ENSCGRG00000012277	Snd1	99	97.285	Cricetulus_griseus_crigri
ENSNLEG00000012263	SND1	100	84.555	ENSCSEG00000008661	snd1	98	84.564	Cynoglossus_semilaevis
ENSNLEG00000012263	SND1	100	85.344	ENSCVAG00000010316	snd1	100	83.793	Cyprinodon_variegatus
ENSNLEG00000012263	SND1	100	85.698	ENSDARG00000006766	snd1	99	85.965	Danio_rerio
ENSNLEG00000012263	SND1	100	96.167	ENSDNOG00000006795	SND1	100	96.167	Dasypus_novemcinctus
ENSNLEG00000012263	SND1	100	98.757	ENSDORG00000000336	Snd1	100	98.681	Dipodomys_ordii
ENSNLEG00000012263	SND1	99	50.714	FBgn0035121	Tudor-SN	99	50.212	Drosophila_melanogaster
ENSNLEG00000012263	SND1	92	100.000	ENSETEG00000000375	SND1	92	100.000	Echinops_telfairi
ENSNLEG00000012263	SND1	86	66.845	ENSEBUG00000014201	-	84	75.956	Eptatretus_burgeri
ENSNLEG00000012263	SND1	99	99.494	ENSEASG00005008513	SND1	100	97.516	Equus_asinus_asinus
ENSNLEG00000012263	SND1	100	99.209	ENSECAG00000011451	SND1	100	99.121	Equus_caballus
ENSNLEG00000012263	SND1	99	96.965	ENSEEUG00000014737	SND1	100	86.703	Erinaceus_europaeus
ENSNLEG00000012263	SND1	99	83.946	ENSELUG00000001805	snd1	96	82.585	Esox_lucius
ENSNLEG00000012263	SND1	100	99.322	ENSFCAG00000008289	SND1	100	99.121	Felis_catus
ENSNLEG00000012263	SND1	100	98.531	ENSFDAG00000015881	SND1	100	98.352	Fukomys_damarensis
ENSNLEG00000012263	SND1	98	86.341	ENSFHEG00000004093	snd1	99	83.982	Fundulus_heteroclitus
ENSNLEG00000012263	SND1	64	75.141	ENSGMOG00000018932	snd1	66	75.141	Gadus_morhua
ENSNLEG00000012263	SND1	54	96.111	ENSGALG00000052684	-	50	93.583	Gallus_gallus
ENSNLEG00000012263	SND1	99	86.387	ENSGAFG00000008421	snd1	100	84.320	Gambusia_affinis
ENSNLEG00000012263	SND1	100	54.129	ENSGACG00000019793	snd1	100	53.855	Gasterosteus_aculeatus
ENSNLEG00000012263	SND1	100	100.000	ENSGGOG00000009614	SND1	100	99.890	Gorilla_gorilla
ENSNLEG00000012263	SND1	100	84.442	ENSHBUG00000019135	snd1	99	83.700	Haplochromis_burtoni
ENSNLEG00000012263	SND1	100	98.079	ENSHGLG00000003618	SND1	100	98.022	Heterocephalus_glaber_female
ENSNLEG00000012263	SND1	100	98.079	ENSHGLG00100012449	SND1	100	97.680	Heterocephalus_glaber_male
ENSNLEG00000012263	SND1	99	85.378	ENSHCOG00000005266	snd1	100	82.785	Hippocampus_comes
ENSNLEG00000012263	SND1	99	85.427	ENSIPUG00000013279	snd1	100	82.495	Ictalurus_punctatus
ENSNLEG00000012263	SND1	100	98.757	ENSSTOG00000002140	SND1	100	98.681	Ictidomys_tridecemlineatus
ENSNLEG00000012263	SND1	100	98.870	ENSJJAG00000009561	Snd1	100	98.791	Jaculus_jaculus
ENSNLEG00000012263	SND1	99	86.218	ENSKMAG00000016997	snd1	100	84.101	Kryptolebias_marmoratus
ENSNLEG00000012263	SND1	100	86.515	ENSLBEG00000013563	snd1	100	83.004	Labrus_bergylta
ENSNLEG00000012263	SND1	100	85.698	ENSLOCG00000015537	snd1	100	84.691	Lepisosteus_oculatus
ENSNLEG00000012263	SND1	100	98.644	ENSLAFG00000009696	SND1	100	98.352	Loxodonta_africana
ENSNLEG00000012263	SND1	100	99.774	ENSMFAG00000038114	SND1	100	99.670	Macaca_fascicularis
ENSNLEG00000012263	SND1	100	99.774	ENSMMUG00000015432	SND1	100	99.670	Macaca_mulatta
ENSNLEG00000012263	SND1	100	99.774	ENSMNEG00000039808	SND1	100	99.774	Macaca_nemestrina
ENSNLEG00000012263	SND1	100	99.661	ENSMLEG00000029040	SND1	100	99.661	Mandrillus_leucophaeus
ENSNLEG00000012263	SND1	97	87.910	ENSMAMG00000011739	snd1	98	84.598	Mastacembelus_armatus
ENSNLEG00000012263	SND1	100	84.442	ENSMZEG00005005681	snd1	99	83.516	Maylandia_zebra
ENSNLEG00000012263	SND1	100	99.322	ENSMICG00000000097	SND1	100	99.231	Microcebus_murinus
ENSNLEG00000012263	SND1	100	98.079	ENSMOCG00000005040	Snd1	100	98.022	Microtus_ochrogaster
ENSNLEG00000012263	SND1	100	84.555	ENSMMOG00000001795	snd1	100	83.443	Mola_mola
ENSNLEG00000012263	SND1	100	96.045	ENSMODG00000015182	SND1	100	95.824	Monodelphis_domestica
ENSNLEG00000012263	SND1	99	85.378	ENSMALG00000012071	snd1	100	83.224	Monopterus_albus
ENSNLEG00000012263	SND1	100	97.853	MGP_CAROLIEiJ_G0028159	Snd1	100	97.692	Mus_caroli
ENSNLEG00000012263	SND1	100	97.627	ENSMUSG00000001424	Snd1	100	97.473	Mus_musculus
ENSNLEG00000012263	SND1	100	97.853	MGP_PahariEiJ_G0021917	Snd1	100	98.314	Mus_pahari
ENSNLEG00000012263	SND1	100	97.853	MGP_SPRETEiJ_G0029159	Snd1	100	97.692	Mus_spretus
ENSNLEG00000012263	SND1	100	98.757	ENSMPUG00000006545	SND1	100	98.462	Mustela_putorius_furo
ENSNLEG00000012263	SND1	99	97.318	ENSMLUG00000017130	SND1	99	97.318	Myotis_lucifugus
ENSNLEG00000012263	SND1	100	98.079	ENSNGAG00000011186	Snd1	100	98.022	Nannospalax_galili
ENSNLEG00000012263	SND1	100	84.329	ENSNBRG00000006681	snd1	99	83.407	Neolamprologus_brichardi
ENSNLEG00000012263	SND1	92	100.000	ENSOPRG00000013405	SND1	92	100.000	Ochotona_princeps
ENSNLEG00000012263	SND1	100	98.644	ENSODEG00000011502	SND1	100	98.462	Octodon_degus
ENSNLEG00000012263	SND1	100	84.329	ENSONIG00000011481	snd1	97	83.407	Oreochromis_niloticus
ENSNLEG00000012263	SND1	99	94.683	ENSOANG00000000817	SND1	99	93.282	Ornithorhynchus_anatinus
ENSNLEG00000012263	SND1	100	97.627	ENSOCUG00000001620	SND1	100	97.473	Oryctolagus_cuniculus
ENSNLEG00000012263	SND1	97	87.716	ENSORLG00000015201	snd1	98	84.022	Oryzias_latipes
ENSNLEG00000012263	SND1	97	87.716	ENSORLG00020013991	snd1	98	84.134	Oryzias_latipes_hni
ENSNLEG00000012263	SND1	97	87.716	ENSORLG00015012436	snd1	98	84.134	Oryzias_latipes_hsok
ENSNLEG00000012263	SND1	100	84.442	ENSOMEG00000006406	snd1	98	84.452	Oryzias_melastigma
ENSNLEG00000012263	SND1	100	99.211	ENSOGAG00000013356	SND1	94	99.123	Otolemur_garnettii
ENSNLEG00000012263	SND1	100	96.271	ENSOARG00000002149	SND1	100	96.271	Ovis_aries
ENSNLEG00000012263	SND1	100	99.887	ENSPPAG00000042947	SND1	100	99.780	Pan_paniscus
ENSNLEG00000012263	SND1	100	99.322	ENSPPRG00000004494	SND1	100	99.121	Panthera_pardus
ENSNLEG00000012263	SND1	100	99.209	ENSPTIG00000014214	SND1	100	99.011	Panthera_tigris_altaica
ENSNLEG00000012263	SND1	100	99.887	ENSPTRG00000023911	SND1	100	99.780	Pan_troglodytes
ENSNLEG00000012263	SND1	99	99.831	ENSPANG00000011997	SND1	99	99.774	Papio_anubis
ENSNLEG00000012263	SND1	97	84.915	ENSPKIG00000023494	snd1	100	80.740	Paramormyrops_kingsleyae
ENSNLEG00000012263	SND1	92	86.232	ENSPMGG00000003629	snd1	100	83.114	Periophthalmus_magnuspinnatus
ENSNLEG00000012263	SND1	100	97.966	ENSPEMG00000010240	Snd1	100	97.912	Peromyscus_maniculatus_bairdii
ENSNLEG00000012263	SND1	94	79.649	ENSPMAG00000007915	-	99	73.559	Petromyzon_marinus
ENSNLEG00000012263	SND1	100	96.497	ENSPCIG00000011561	SND1	100	96.264	Phascolarctos_cinereus
ENSNLEG00000012263	SND1	99	86.050	ENSPFOG00000001557	snd1	100	83.991	Poecilia_formosa
ENSNLEG00000012263	SND1	99	86.218	ENSPLAG00000018459	snd1	97	83.991	Poecilia_latipinna
ENSNLEG00000012263	SND1	99	86.555	ENSPMEG00000006803	snd1	100	84.430	Poecilia_mexicana
ENSNLEG00000012263	SND1	99	86.555	ENSPREG00000002189	snd1	100	84.101	Poecilia_reticulata
ENSNLEG00000012263	SND1	99	99.663	ENSPPYG00000017972	SND1	100	98.652	Pongo_abelii
ENSNLEG00000012263	SND1	100	86.554	ENSPCAG00000011305	SND1	100	86.703	Procavia_capensis
ENSNLEG00000012263	SND1	100	99.548	ENSPCOG00000026791	SND1	100	99.548	Propithecus_coquereli
ENSNLEG00000012263	SND1	100	97.062	ENSPVAG00000013945	SND1	100	97.033	Pteropus_vampyrus
ENSNLEG00000012263	SND1	100	84.442	ENSPNYG00000000932	snd1	99	83.516	Pundamilia_nyererei
ENSNLEG00000012263	SND1	99	85.930	ENSPNAG00000001206	snd1	100	83.370	Pygocentrus_nattereri
ENSNLEG00000012263	SND1	100	97.627	ENSRNOG00000031173	Snd1	99	97.357	Rattus_norvegicus
ENSNLEG00000012263	SND1	95	99.624	ENSRBIG00000027782	-	93	99.810	Rhinopithecus_bieti
ENSNLEG00000012263	SND1	100	99.774	ENSRROG00000033020	SND1	100	99.670	Rhinopithecus_roxellana
ENSNLEG00000012263	SND1	100	99.322	ENSSBOG00000032461	SND1	100	99.231	Saimiri_boliviensis_boliviensis
ENSNLEG00000012263	SND1	99	93.326	ENSSHAG00000015359	SND1	100	92.905	Sarcophilus_harrisii
ENSNLEG00000012263	SND1	99	84.551	ENSSFOG00015001103	snd1	100	82.372	Scleropages_formosus
ENSNLEG00000012263	SND1	100	83.991	ENSSMAG00000001932	snd1	94	82.747	Scophthalmus_maximus
ENSNLEG00000012263	SND1	100	84.780	ENSSDUG00000002699	snd1	94	83.662	Seriola_dumerili
ENSNLEG00000012263	SND1	100	77.339	ENSSLDG00000001950	snd1	100	76.425	Seriola_lalandi_dorsalis
ENSNLEG00000012263	SND1	95	91.887	ENSSARG00000004877	SND1	92	97.170	Sorex_araneus
ENSNLEG00000012263	SND1	94	87.826	ENSSPUG00000017586	SND1	96	87.826	Sphenodon_punctatus
ENSNLEG00000012263	SND1	96	86.979	ENSSPAG00000021398	snd1	96	86.979	Stegastes_partitus
ENSNLEG00000012263	SND1	100	98.870	ENSSSCG00000016590	SND1	100	98.791	Sus_scrofa
ENSNLEG00000012263	SND1	98	87.455	ENSTRUG00000014067	snd1	99	83.260	Takifugu_rubripes
ENSNLEG00000012263	SND1	99	86.265	ENSTNIG00000011019	snd1	98	86.265	Tetraodon_nigroviridis
ENSNLEG00000012263	SND1	96	93.160	ENSTBEG00000003999	SND1	100	93.160	Tupaia_belangeri
ENSNLEG00000012263	SND1	100	94.176	ENSTTRG00000006059	SND1	100	94.176	Tursiops_truncatus
ENSNLEG00000012263	SND1	93	98.859	ENSUAMG00000005604	-	93	98.859	Ursus_americanus
ENSNLEG00000012263	SND1	91	89.406	ENSUAMG00000002820	-	90	90.130	Ursus_americanus
ENSNLEG00000012263	SND1	100	99.209	ENSUMAG00000005960	SND1	100	98.901	Ursus_maritimus
ENSNLEG00000012263	SND1	94	88.007	ENSVPAG00000008302	SND1	74	100.000	Vicugna_pacos
ENSNLEG00000012263	SND1	100	99.096	ENSVVUG00000007226	SND1	100	98.901	Vulpes_vulpes
ENSNLEG00000012263	SND1	95	91.358	ENSXETG00000023043	snd1	100	84.668	Xenopus_tropicalis
ENSNLEG00000012263	SND1	92	87.681	ENSXCOG00000013629	snd1	99	81.829	Xiphophorus_couchianus
ENSNLEG00000012263	SND1	99	86.387	ENSXMAG00000011469	snd1	100	84.320	Xiphophorus_maculatus