EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSNLEG00000012439 (Gene tree)
Gene ID: 100604174
Gene Symbol: SMG5
Alias: EST1B|KIAA1089|LPTS-RP1|LPTSRP1|RP11-54H19.7|SMG-5
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Nomascus_leucogenys
Status: putative
Strand: Plus strand
Length: 32726 bases
Position: chr12:45866813-45899538
Accession: 100604174
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNLEP00000015150	EST1	PF10374.9	1.1e-23	1	1
ENSNLEP00000015150	EST1_DNA_bind	PF10373.9	3.5e-40	1	2
ENSNLEP00000015150	EST1_DNA_bind	PF10373.9	3.5e-40	2	2
ENSNLEP00000015150	PIN_4	PF13638.6	2.7e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNLET00000015907	SMG5-201	4598	XM_003259448	ENSNLEP00000015150	1016 (aa)	XP_003259496	G1RPI6

Gene Model

Click here to download ENSNLEG00000012439's gene model file

Pathways

Pathway ID	Pathway Name	Source
nle03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSNLEG00000012439's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNLEG00000012439	SMG5	100	99.016	ENSG00000198952	SMG5	100	99.016	Homo_sapiens
ENSNLEG00000012439	SMG5	99	67.647	ENSAPOG00000019690	smg5	92	77.336	Acanthochromis_polyacanthus
ENSNLEG00000012439	SMG5	98	92.346	ENSAMEG00000014458	SMG5	100	92.346	Ailuropoda_melanoleuca
ENSNLEG00000012439	SMG5	99	65.038	ENSACIG00000001353	smg5	99	66.763	Amphilophus_citrinellus
ENSNLEG00000012439	SMG5	98	64.729	ENSAOCG00000019483	smg5	93	66.598	Amphiprion_ocellaris
ENSNLEG00000012439	SMG5	98	66.501	ENSAPEG00000022949	smg5	98	66.335	Amphiprion_percula
ENSNLEG00000012439	SMG5	99	65.896	ENSATEG00000005348	smg5	99	67.313	Anabas_testudineus
ENSNLEG00000012439	SMG5	98	78.927	ENSAPLG00000010263	SMG5	100	78.634	Anas_platyrhynchos
ENSNLEG00000012439	SMG5	100	97.933	ENSANAG00000032899	SMG5	100	97.933	Aotus_nancymaae
ENSNLEG00000012439	SMG5	99	64.683	ENSACLG00000009311	smg5	99	66.218	Astatotilapia_calliptera
ENSNLEG00000012439	SMG5	100	95.669	ENSBTAG00000009435	SMG5	100	95.669	Bos_taurus
ENSNLEG00000012439	SMG5	99	44.552	ENSBTAG00000021747	-	99	43.684	Bos_taurus
ENSNLEG00000012439	SMG5	100	97.933	ENSCJAG00000005684	SMG5	100	97.933	Callithrix_jacchus
ENSNLEG00000012439	SMG5	100	94.094	ENSCAFG00000016839	SMG5	100	93.406	Canis_familiaris
ENSNLEG00000012439	SMG5	100	94.094	ENSCAFG00020006061	SMG5	100	93.406	Canis_lupus_dingo
ENSNLEG00000012439	SMG5	99	45.168	ENSCHIG00000006323	-	99	43.817	Capra_hircus
ENSNLEG00000012439	SMG5	100	95.571	ENSCHIG00000007709	SMG5	100	95.571	Capra_hircus
ENSNLEG00000012439	SMG5	100	96.952	ENSTSYG00000004099	SMG5	100	96.952	Carlito_syrichta
ENSNLEG00000012439	SMG5	97	74.442	ENSCAPG00000003631	SMG5	100	74.974	Cavia_aperea
ENSNLEG00000012439	SMG5	100	95.481	ENSCPOG00000015696	SMG5	100	95.187	Cavia_porcellus
ENSNLEG00000012439	SMG5	100	97.933	ENSCCAG00000027409	SMG5	100	97.933	Cebus_capucinus
ENSNLEG00000012439	SMG5	100	99.213	ENSCATG00000030539	SMG5	100	99.213	Cercocebus_atys
ENSNLEG00000012439	SMG5	100	95.776	ENSCLAG00000003983	SMG5	100	95.678	Chinchilla_lanigera
ENSNLEG00000012439	SMG5	100	99.114	ENSCSAG00000002120	SMG5	100	99.114	Chlorocebus_sabaeus
ENSNLEG00000012439	SMG5	54	93.431	ENSCHOG00000008741	-	57	93.431	Choloepus_hoffmanni
ENSNLEG00000012439	SMG5	94	78.564	ENSCPBG00000025848	SMG5	100	78.261	Chrysemys_picta_bellii
ENSNLEG00000012439	SMG5	93	35.227	ENSCING00000008706	-	99	35.149	Ciona_intestinalis
ENSNLEG00000012439	SMG5	100	94.783	ENSCANG00000029208	SMG5	100	94.783	Colobus_angolensis_palliatus
ENSNLEG00000012439	SMG5	100	92.338	ENSCGRG00001006336	Smg5	100	92.043	Cricetulus_griseus_chok1gshd
ENSNLEG00000012439	SMG5	98	92.354	ENSCGRG00000005111	Smg5	100	92.044	Cricetulus_griseus_crigri
ENSNLEG00000012439	SMG5	99	65.598	ENSCSEG00000014220	smg5	92	78.014	Cynoglossus_semilaevis
ENSNLEG00000012439	SMG5	99	60.819	ENSCVAG00000000529	smg5	99	61.516	Cyprinodon_variegatus
ENSNLEG00000012439	SMG5	92	36.998	ENSDNOG00000039862	-	100	35.556	Dasypus_novemcinctus
ENSNLEG00000012439	SMG5	100	91.535	ENSDNOG00000000051	SMG5	100	91.535	Dasypus_novemcinctus
ENSNLEG00000012439	SMG5	100	93.910	ENSDORG00000010382	Smg5	100	93.222	Dipodomys_ordii
ENSNLEG00000012439	SMG5	66	35.484	FBgn0019890	Smg5	62	35.484	Drosophila_melanogaster
ENSNLEG00000012439	SMG5	82	97.087	ENSETEG00000010336	SMG5	83	97.087	Echinops_telfairi
ENSNLEG00000012439	SMG5	90	46.546	ENSEBUG00000003739	smg5	98	46.267	Eptatretus_burgeri
ENSNLEG00000012439	SMG5	100	96.654	ENSEASG00005019122	SMG5	100	96.654	Equus_asinus_asinus
ENSNLEG00000012439	SMG5	100	96.654	ENSECAG00000001389	SMG5	100	96.654	Equus_caballus
ENSNLEG00000012439	SMG5	72	98.271	ENSEEUG00000012690	SMG5	73	98.271	Erinaceus_europaeus
ENSNLEG00000012439	SMG5	99	65.255	ENSELUG00000012585	smg5	99	65.159	Esox_lucius
ENSNLEG00000012439	SMG5	100	93.701	ENSFCAG00000011783	SMG5	100	92.920	Felis_catus
ENSNLEG00000012439	SMG5	58	81.636	ENSFALG00000001166	-	99	81.742	Ficedula_albicollis
ENSNLEG00000012439	SMG5	98	92.749	ENSFDAG00000017388	SMG5	100	92.649	Fukomys_damarensis
ENSNLEG00000012439	SMG5	97	62.260	ENSFHEG00000013939	smg5	95	68.476	Fundulus_heteroclitus
ENSNLEG00000012439	SMG5	99	61.224	ENSGMOG00000007310	smg5	92	76.606	Gadus_morhua
ENSNLEG00000012439	SMG5	99	77.618	ENSGALG00000029918	-	100	77.324	Gallus_gallus
ENSNLEG00000012439	SMG5	86	75.792	ENSGAFG00000021691	smg5	95	67.412	Gambusia_affinis
ENSNLEG00000012439	SMG5	100	79.356	ENSGAGG00000016131	SMG5	100	79.167	Gopherus_agassizii
ENSNLEG00000012439	SMG5	100	99.114	ENSGGOG00000010932	SMG5	100	99.114	Gorilla_gorilla
ENSNLEG00000012439	SMG5	99	64.402	ENSHBUG00000008654	smg5	99	65.271	Haplochromis_burtoni
ENSNLEG00000012439	SMG5	100	92.633	ENSHGLG00000019152	SMG5	100	92.829	Heterocephalus_glaber_female
ENSNLEG00000012439	SMG5	90	92.771	ENSHGLG00100015948	SMG5	99	92.990	Heterocephalus_glaber_male
ENSNLEG00000012439	SMG5	86	73.594	ENSHCOG00000010229	smg5	83	76.190	Hippocampus_comes
ENSNLEG00000012439	SMG5	99	60.562	ENSIPUG00000006624	Smg5	99	62.078	Ictalurus_punctatus
ENSNLEG00000012439	SMG5	100	96.264	ENSSTOG00000001780	SMG5	100	96.264	Ictidomys_tridecemlineatus
ENSNLEG00000012439	SMG5	100	92.640	ENSJJAG00000022763	Smg5	100	92.444	Jaculus_jaculus
ENSNLEG00000012439	SMG5	50	59.341	ENSKMAG00000014586	smg5	99	61.259	Kryptolebias_marmoratus
ENSNLEG00000012439	SMG5	99	66.313	ENSLBEG00000002145	smg5	92	78.538	Labrus_bergylta
ENSNLEG00000012439	SMG5	100	64.767	ENSLACG00000010521	SMG5	100	64.672	Latimeria_chalumnae
ENSNLEG00000012439	SMG5	96	78.638	ENSLOCG00000008380	smg5	92	78.673	Lepisosteus_oculatus
ENSNLEG00000012439	SMG5	100	94.193	ENSLAFG00000006241	SMG5	100	94.193	Loxodonta_africana
ENSNLEG00000012439	SMG5	100	99.114	ENSMFAG00000045357	SMG5	100	99.114	Macaca_fascicularis
ENSNLEG00000012439	SMG5	100	99.016	ENSMMUG00000000090	SMG5	100	99.016	Macaca_mulatta
ENSNLEG00000012439	SMG5	100	99.016	ENSMNEG00000044425	SMG5	100	99.016	Macaca_nemestrina
ENSNLEG00000012439	SMG5	100	92.843	ENSMLEG00000041192	SMG5	100	92.843	Mandrillus_leucophaeus
ENSNLEG00000012439	SMG5	99	61.017	ENSMAMG00000010683	smg5	58	56.699	Mastacembelus_armatus
ENSNLEG00000012439	SMG5	63	58.559	ENSMZEG00005016543	smg5	100	59.394	Maylandia_zebra
ENSNLEG00000012439	SMG5	99	63.688	ENSMZEG00005015815	smg5	99	64.544	Maylandia_zebra
ENSNLEG00000012439	SMG5	100	91.552	ENSMAUG00000010381	Smg5	100	91.356	Mesocricetus_auratus
ENSNLEG00000012439	SMG5	55	45.709	ENSMAUG00000000043	-	96	44.792	Mesocricetus_auratus
ENSNLEG00000012439	SMG5	100	97.146	ENSMICG00000002257	SMG5	100	97.146	Microcebus_murinus
ENSNLEG00000012439	SMG5	100	91.373	ENSMOCG00000016590	Smg5	100	90.784	Microtus_ochrogaster
ENSNLEG00000012439	SMG5	99	59.127	ENSMMOG00000017199	smg5	99	59.659	Mola_mola
ENSNLEG00000012439	SMG5	87	89.865	ENSMODG00000016901	SMG5	98	90.315	Monodelphis_domestica
ENSNLEG00000012439	SMG5	93	37.317	ENSMODG00000004532	-	83	37.940	Monodelphis_domestica
ENSNLEG00000012439	SMG5	78	37.783	ENSMODG00000010675	-	84	37.931	Monodelphis_domestica
ENSNLEG00000012439	SMG5	80	38.407	ENSMODG00000004735	-	86	39.733	Monodelphis_domestica
ENSNLEG00000012439	SMG5	97	35.089	ENSMODG00000004511	-	99	34.356	Monodelphis_domestica
ENSNLEG00000012439	SMG5	99	60.284	ENSMALG00000010375	smg5	99	58.437	Monopterus_albus
ENSNLEG00000012439	SMG5	100	91.945	MGP_CAROLIEiJ_G0025163	Smg5	100	98.324	Mus_caroli
ENSNLEG00000012439	SMG5	100	92.141	ENSMUSG00000001415	Smg5	99	98.324	Mus_musculus
ENSNLEG00000012439	SMG5	100	91.953	MGP_PahariEiJ_G0026606	Smg5	100	98.324	Mus_pahari
ENSNLEG00000012439	SMG5	100	91.945	MGP_SPRETEiJ_G0026104	Smg5	100	98.324	Mus_spretus
ENSNLEG00000012439	SMG5	94	92.632	ENSMPUG00000004546	SMG5	100	91.895	Mustela_putorius_furo
ENSNLEG00000012439	SMG5	100	94.716	ENSMLUG00000008518	SMG5	100	93.836	Myotis_lucifugus
ENSNLEG00000012439	SMG5	100	93.609	ENSNGAG00000020706	Smg5	100	93.314	Nannospalax_galili
ENSNLEG00000012439	SMG5	98	44.478	ENSNGAG00000012101	-	98	44.554	Nannospalax_galili
ENSNLEG00000012439	SMG5	97	63.200	ENSNBRG00000004332	smg5	98	65.135	Neolamprologus_brichardi
ENSNLEG00000012439	SMG5	100	87.807	ENSMEUG00000012834	SMG5	100	86.922	Notamacropus_eugenii
ENSNLEG00000012439	SMG5	100	94.094	ENSOPRG00000009152	SMG5	100	94.094	Ochotona_princeps
ENSNLEG00000012439	SMG5	100	95.374	ENSODEG00000012237	SMG5	100	95.374	Octodon_degus
ENSNLEG00000012439	SMG5	50	59.963	ENSONIG00000008632	smg5	55	55.754	Oreochromis_niloticus
ENSNLEG00000012439	SMG5	98	95.262	ENSOCUG00000012886	SMG5	100	95.262	Oryctolagus_cuniculus
ENSNLEG00000012439	SMG5	89	40.700	ENSOCUG00000023338	-	99	40.700	Oryctolagus_cuniculus
ENSNLEG00000012439	SMG5	91	76.905	ENSORLG00000016239	smg5	99	61.973	Oryzias_latipes
ENSNLEG00000012439	SMG5	99	64.230	ENSORLG00020013127	smg5	99	65.725	Oryzias_latipes_hni
ENSNLEG00000012439	SMG5	99	64.140	ENSORLG00015019014	smg5	99	65.792	Oryzias_latipes_hsok
ENSNLEG00000012439	SMG5	100	94.980	ENSOGAG00000004966	SMG5	100	94.980	Otolemur_garnettii
ENSNLEG00000012439	SMG5	100	95.669	ENSOARG00000005778	SMG5	100	95.669	Ovis_aries
ENSNLEG00000012439	SMG5	99	44.834	ENSOARG00000011963	-	99	43.829	Ovis_aries
ENSNLEG00000012439	SMG5	100	98.819	ENSPPAG00000011996	SMG5	100	98.819	Pan_paniscus
ENSNLEG00000012439	SMG5	98	93.548	ENSPPRG00000011901	SMG5	100	92.742	Panthera_pardus
ENSNLEG00000012439	SMG5	99	85.373	ENSPTIG00000007892	SMG5	98	85.223	Panthera_tigris_altaica
ENSNLEG00000012439	SMG5	100	99.016	ENSPTRG00000023925	SMG5	100	99.016	Pan_troglodytes
ENSNLEG00000012439	SMG5	100	99.016	ENSPTRG00000049282	-	100	99.016	Pan_troglodytes
ENSNLEG00000012439	SMG5	100	99.213	ENSPANG00000011201	SMG5	100	99.213	Papio_anubis
ENSNLEG00000012439	SMG5	99	65.318	ENSPKIG00000009402	smg5	99	65.567	Paramormyrops_kingsleyae
ENSNLEG00000012439	SMG5	98	80.735	ENSPSIG00000015198	SMG5	100	80.377	Pelodiscus_sinensis
ENSNLEG00000012439	SMG5	99	60.424	ENSPMGG00000010465	smg5	99	59.596	Periophthalmus_magnuspinnatus
ENSNLEG00000012439	SMG5	56	46.235	ENSPEMG00000010022	-	95	45.189	Peromyscus_maniculatus_bairdii
ENSNLEG00000012439	SMG5	100	92.731	ENSPEMG00000001819	Smg5	100	92.436	Peromyscus_maniculatus_bairdii
ENSNLEG00000012439	SMG5	99	49.324	ENSPMAG00000000410	smg5	100	49.430	Petromyzon_marinus
ENSNLEG00000012439	SMG5	100	89.489	ENSPCIG00000018938	SMG5	100	89.882	Phascolarctos_cinereus
ENSNLEG00000012439	SMG5	50	60.405	ENSPFOG00000010191	smg5	99	62.444	Poecilia_formosa
ENSNLEG00000012439	SMG5	50	60.482	ENSPLAG00000009332	smg5	99	62.266	Poecilia_latipinna
ENSNLEG00000012439	SMG5	99	65.802	ENSPMEG00000014105	smg5	99	65.418	Poecilia_mexicana
ENSNLEG00000012439	SMG5	93	76.018	ENSPREG00000017713	smg5	99	62.366	Poecilia_reticulata
ENSNLEG00000012439	SMG5	100	99.311	ENSPPYG00000000723	SMG5	100	99.311	Pongo_abelii
ENSNLEG00000012439	SMG5	75	97.790	ENSPCAG00000008412	SMG5	81	97.790	Procavia_capensis
ENSNLEG00000012439	SMG5	100	97.244	ENSPCOG00000004741	SMG5	100	97.244	Propithecus_coquereli
ENSNLEG00000012439	SMG5	100	85.728	ENSPVAG00000016748	SMG5	100	85.728	Pteropus_vampyrus
ENSNLEG00000012439	SMG5	93	63.883	ENSPNYG00000013397	smg5	99	61.116	Pundamilia_nyererei
ENSNLEG00000012439	SMG5	100	92.141	ENSRNOG00000019590	Smg5	100	91.847	Rattus_norvegicus
ENSNLEG00000012439	SMG5	100	98.917	ENSRBIG00000027428	SMG5	100	98.917	Rhinopithecus_bieti
ENSNLEG00000012439	SMG5	100	98.819	ENSRROG00000030035	SMG5	100	98.819	Rhinopithecus_roxellana
ENSNLEG00000012439	SMG5	100	97.933	ENSSBOG00000033339	SMG5	100	97.933	Saimiri_boliviensis_boliviensis
ENSNLEG00000012439	SMG5	99	33.877	ENSSHAG00000009572	-	99	33.496	Sarcophilus_harrisii
ENSNLEG00000012439	SMG5	88	40.157	ENSSHAG00000000561	-	87	40.157	Sarcophilus_harrisii
ENSNLEG00000012439	SMG5	64	39.766	ENSSHAG00000000935	-	82	40.854	Sarcophilus_harrisii
ENSNLEG00000012439	SMG5	98	89.089	ENSSHAG00000014163	SMG5	100	89.489	Sarcophilus_harrisii
ENSNLEG00000012439	SMG5	96	76.852	ENSSFOG00015024175	smg5	99	66.244	Scleropages_formosus
ENSNLEG00000012439	SMG5	99	60.870	ENSSMAG00000013059	smg5	99	62.422	Scophthalmus_maximus
ENSNLEG00000012439	SMG5	50	59.964	ENSSDUG00000007122	smg5	92	77.103	Seriola_dumerili
ENSNLEG00000012439	SMG5	97	61.440	ENSSLDG00000011418	smg5	92	77.830	Seriola_lalandi_dorsalis
ENSNLEG00000012439	SMG5	90	81.025	ENSSARG00000012484	SMG5	100	81.025	Sorex_araneus
ENSNLEG00000012439	SMG5	94	77.305	ENSSPUG00000002260	SMG5	100	76.393	Sphenodon_punctatus
ENSNLEG00000012439	SMG5	91	76.815	ENSSPAG00000014266	smg5	99	65.351	Stegastes_partitus
ENSNLEG00000012439	SMG5	100	96.850	ENSSSCG00000006490	-	100	96.850	Sus_scrofa
ENSNLEG00000012439	SMG5	54	37.615	ENSSSCG00000037182	-	88	37.615	Sus_scrofa
ENSNLEG00000012439	SMG5	99	74.778	ENSSSCG00000039308	-	100	74.975	Sus_scrofa
ENSNLEG00000012439	SMG5	99	80.613	ENSTGUG00000003748	-	100	80.371	Taeniopygia_guttata
ENSNLEG00000012439	SMG5	99	64.479	ENSTRUG00000012580	smg5	99	64.382	Takifugu_rubripes
ENSNLEG00000012439	SMG5	99	65.116	ENSTNIG00000010303	smg5	99	64.985	Tetraodon_nigroviridis
ENSNLEG00000012439	SMG5	60	100.000	ENSTBEG00000002777	SMG5	60	100.000	Tupaia_belangeri
ENSNLEG00000012439	SMG5	100	91.535	ENSTTRG00000001401	SMG5	100	91.535	Tursiops_truncatus
ENSNLEG00000012439	SMG5	100	93.209	ENSUAMG00000013721	SMG5	100	92.520	Ursus_americanus
ENSNLEG00000012439	SMG5	98	88.744	ENSUMAG00000018041	SMG5	97	88.040	Ursus_maritimus
ENSNLEG00000012439	SMG5	98	86.680	ENSVPAG00000009446	SMG5	99	86.680	Vicugna_pacos
ENSNLEG00000012439	SMG5	100	93.996	ENSVVUG00000005887	SMG5	100	93.307	Vulpes_vulpes
ENSNLEG00000012439	SMG5	77	65.826	ENSXETG00000033791	SMG5	99	65.069	Xenopus_tropicalis
ENSNLEG00000012439	SMG5	76	75.566	ENSXCOG00000004379	smg5	95	68.681	Xiphophorus_couchianus
ENSNLEG00000012439	SMG5	93	75.339	ENSXMAG00000013499	smg5	99	65.865	Xiphophorus_maculatus