EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSNLEG00000013359 (Gene tree)
Gene ID
100604815
Gene Symbol
CPSF3
Alias
CPSF-73|CPSF73|YSH1
Full Name
cleavage and polyadenylation specific factor 3
Gene Type
protein_coding
Species
Nomascus_leucogenys
Status
putative
Strand
Plus strand
Length
56694 bases
Position
chr19:9013126-9069819
Accession
100604815
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSNLEP00000027867CPSF73-100_CPF11718.81.2e-5411
ENSNLEP00000023313CPSF73-100_CPF11718.81.4e-5411
ENSNLEP00000016256CPSF73-100_CPF11718.81.4e-5411
ENSNLEP00000040421Beta-CaspPF10996.84.9e-3411
ENSNLEP00000027867Beta-CaspPF10996.86.3e-3411
ENSNLEP00000023313Beta-CaspPF10996.87e-3411
ENSNLEP00000016256Beta-CaspPF10996.87.2e-3411
ENSNLEP00000040421Lactamase_BPF00753.279.3e-1911
ENSNLEP00000023313Lactamase_BPF00753.271.6e-1811
ENSNLEP00000027867Lactamase_BPF00753.273.5e-1511
ENSNLEP00000016256Lactamase_BPF00753.273.2e-1311
ENSNLEP00000040421RMMBLPF07521.121.5e-2111
ENSNLEP00000027867RMMBLPF07521.121.7e-2111
ENSNLEP00000023313RMMBLPF07521.121.8e-2111
ENSNLEP00000016256RMMBLPF07521.121.9e-2111
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSNLET00000017089CPSF3-2022100XM_003272717ENSNLEP00000016256699 (aa)XP_003272765G1RSN3
ENSNLET00000031679CPSF3-2012633-ENSNLEP00000023313684 (aa)-M3Z9C6
ENSNLET00000034085CPSF3-2043178XM_012497643ENSNLEP00000027867647 (aa)XP_012353097A0A2I3G999
ENSNLET00000044015CPSF3-2031539-ENSNLEP00000040421512 (aa)-A0A2I3HAB6
Gene Model
Click here to download ENSNLEG00000013359's gene model file
Pathways
Pathway IDPathway NameSource
nle03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSNLEG00000013359's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSNLEG00000013359CPSF38738.681ENSNLEG00000000053INTS117754.054
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSNLEG00000013359CPSF310099.708ENSG00000119203CPSF3100100.000Homo_sapiens
ENSNLEG00000013359CPSF39198.065ENSAPOG00000012241CPSF39096.982Acanthochromis_polyacanthus
ENSNLEG00000013359CPSF39196.774ENSAPOG00000022087cpsf39885.272Acanthochromis_polyacanthus
ENSNLEG00000013359CPSF310099.415ENSAMEG00000008493CPSF310099.415Ailuropoda_melanoleuca
ENSNLEG00000013359CPSF39782.643ENSACIG00000009846cpsf39982.643Amphilophus_citrinellus
ENSNLEG00000013359CPSF39786.349ENSACIG00000023663CPSF39986.349Amphilophus_citrinellus
ENSNLEG00000013359CPSF39198.065ENSAOCG00000010077CPSF39887.794Amphiprion_ocellaris
ENSNLEG00000013359CPSF39196.774ENSAOCG00000022056cpsf39491.156Amphiprion_ocellaris
ENSNLEG00000013359CPSF39198.065ENSAPEG00000021167CPSF39887.794Amphiprion_percula
ENSNLEG00000013359CPSF39196.774ENSAPEG00000019526cpsf39786.574Amphiprion_percula
ENSNLEG00000013359CPSF39198.065ENSATEG00000014525CPSF39883.088Anabas_testudineus
ENSNLEG00000013359CPSF39196.567ENSATEG00000003959cpsf39885.272Anabas_testudineus
ENSNLEG00000013359CPSF310095.518ENSAPLG00000006941CPSF39895.238Anas_platyrhynchos
ENSNLEG00000013359CPSF39892.913ENSACAG00000001759CPSF39992.913Anolis_carolinensis
ENSNLEG00000013359CPSF310093.354ENSANAG00000031254CPSF310093.129Aotus_nancymaae
ENSNLEG00000013359CPSF38896.896ENSACLG00000014484cpsf39985.564Astatotilapia_calliptera
ENSNLEG00000013359CPSF39786.190ENSACLG00000018846CPSF39986.190Astatotilapia_calliptera
ENSNLEG00000013359CPSF39198.065ENSAMXG00000004786cpsf39888.088Astyanax_mexicanus
ENSNLEG00000013359CPSF310099.561ENSBTAG00000019735CPSF310099.561Bos_taurus
ENSNLEG00000013359CPSF39467.012WBGene00013460cpsf-38959.213Caenorhabditis_elegans
ENSNLEG00000013359CPSF310099.708ENSCJAG00000006276CPSF310099.708Callithrix_jacchus
ENSNLEG00000013359CPSF310099.415ENSCAFG00000003375CPSF39599.415Canis_familiaris
ENSNLEG00000013359CPSF39994.059ENSCAFG00020026799CPSF3100100.000Canis_lupus_dingo
ENSNLEG00000013359CPSF310099.561ENSCHIG00000013973CPSF310099.561Capra_hircus
ENSNLEG00000013359CPSF310099.708ENSTSYG00000002967CPSF310099.708Carlito_syrichta
ENSNLEG00000013359CPSF310097.682ENSCAPG00000013851CPSF310097.751Cavia_aperea
ENSNLEG00000013359CPSF310097.807ENSCPOG00000011299CPSF310097.807Cavia_porcellus
ENSNLEG00000013359CPSF310099.854ENSCCAG00000036730CPSF310099.854Cebus_capucinus
ENSNLEG00000013359CPSF310097.856ENSCATG00000014770CPSF399100.000Cercocebus_atys
ENSNLEG00000013359CPSF310097.368ENSCLAG00000002727CPSF310097.368Chinchilla_lanigera
ENSNLEG00000013359CPSF310092.251ENSCSAG00000007125CPSF310092.251Chlorocebus_sabaeus
ENSNLEG00000013359CPSF387100.000ENSCHOG00000000180CPSF38572.281Choloepus_hoffmanni
ENSNLEG00000013359CPSF39995.511ENSCPBG00000014074CPSF39995.455Chrysemys_picta_bellii
ENSNLEG00000013359CPSF39477.547ENSCING00000007214-9868.129Ciona_intestinalis
ENSNLEG00000013359CPSF310086.550ENSCANG00000034435CPSF310086.550Colobus_angolensis_palliatus
ENSNLEG00000013359CPSF310098.830ENSCGRG00001013134Cpsf310098.830Cricetulus_griseus_chok1gshd
ENSNLEG00000013359CPSF310098.830ENSCGRG00000018319Cpsf310098.830Cricetulus_griseus_crigri
ENSNLEG00000013359CPSF39197.204ENSCSEG00000002021CPSF39986.399Cynoglossus_semilaevis
ENSNLEG00000013359CPSF39197.849ENSCVAG00000015067CPSF39888.088Cyprinodon_variegatus
ENSNLEG00000013359CPSF39198.280ENSDARG00000027649cpsf39888.824Danio_rerio
ENSNLEG00000013359CPSF310097.685ENSDNOG00000008940CPSF39597.664Dasypus_novemcinctus
ENSNLEG00000013359CPSF39599.078ENSDORG00000014263Cpsf310099.078Dipodomys_ordii
ENSNLEG00000013359CPSF39876.000FBgn0261065Cpsf739867.158Drosophila_melanogaster
ENSNLEG00000013359CPSF39588.091ENSETEG00000003893CPSF310085.561Echinops_telfairi
ENSNLEG00000013359CPSF39192.241ENSEBUG00000009018cpsf39878.940Eptatretus_burgeri
ENSNLEG00000013359CPSF310099.415ENSEASG00005003970CPSF310099.415Equus_asinus_asinus
ENSNLEG00000013359CPSF310099.415ENSECAG00000019911CPSF310099.415Equus_caballus
ENSNLEG00000013359CPSF310083.918ENSEEUG00000015422CPSF310083.918Erinaceus_europaeus
ENSNLEG00000013359CPSF39197.210ENSELUG00000013775cpsf39887.941Esox_lucius
ENSNLEG00000013359CPSF310099.561ENSFCAG00000007852CPSF310099.561Felis_catus
ENSNLEG00000013359CPSF310095.209ENSFALG00000006572CPSF310095.209Ficedula_albicollis
ENSNLEG00000013359CPSF39997.214ENSFDAG00000006317CPSF39997.214Fukomys_damarensis
ENSNLEG00000013359CPSF39196.129ENSFHEG00000014774cpsf39884.978Fundulus_heteroclitus
ENSNLEG00000013359CPSF36368.537ENSFHEG00000012186CPSF39968.537Fundulus_heteroclitus
ENSNLEG00000013359CPSF39196.344ENSGMOG00000003157cpsf39886.471Gadus_morhua
ENSNLEG00000013359CPSF310094.745ENSGALG00000016424CPSF39995.007Gallus_gallus
ENSNLEG00000013359CPSF39782.671ENSGAFG00000019449cpsf39982.671Gambusia_affinis
ENSNLEG00000013359CPSF39197.854ENSGAFG00000008016CPSF39887.923Gambusia_affinis
ENSNLEG00000013359CPSF37293.362ENSGAGG00000025583CPSF39393.362Gopherus_agassizii
ENSNLEG00000013359CPSF310099.571ENSGGOG00000001757CPSF310099.843Gorilla_gorilla
ENSNLEG00000013359CPSF39196.360ENSHBUG00000001188cpsf39985.463Haplochromis_burtoni
ENSNLEG00000013359CPSF36381.235ENSHBUG00000014332CPSF39981.235Haplochromis_burtoni
ENSNLEG00000013359CPSF310096.784ENSHGLG00000000666CPSF39996.784Heterocephalus_glaber_female
ENSNLEG00000013359CPSF310096.784ENSHGLG00100007765CPSF39996.784Heterocephalus_glaber_male
ENSNLEG00000013359CPSF39196.360ENSHCOG00000007251cpsf39984.751Hippocampus_comes
ENSNLEG00000013359CPSF39197.634ENSHCOG00000015957CPSF39786.176Hippocampus_comes
ENSNLEG00000013359CPSF39196.559ENSIPUG00000023488cpsf39886.912Ictalurus_punctatus
ENSNLEG00000013359CPSF310098.830ENSSTOG00000004476CPSF310098.830Ictidomys_tridecemlineatus
ENSNLEG00000013359CPSF310097.682ENSJJAG00000023415Cpsf310097.661Jaculus_jaculus
ENSNLEG00000013359CPSF39196.352ENSKMAG00000002806cpsf39884.683Kryptolebias_marmoratus
ENSNLEG00000013359CPSF39197.849ENSKMAG00000007317CPSF39887.500Kryptolebias_marmoratus
ENSNLEG00000013359CPSF39191.631ENSLBEG00000020569cpsf39478.971Labrus_bergylta
ENSNLEG00000013359CPSF35879.357ENSLBEG00000015018-9979.357Labrus_bergylta
ENSNLEG00000013359CPSF39198.065ENSLBEG00000013492CPSF39888.889Labrus_bergylta
ENSNLEG00000013359CPSF39983.947ENSLACG00000008308CPSF39883.947Latimeria_chalumnae
ENSNLEG00000013359CPSF39198.065ENSLOCG00000016823cpsf39889.134Lepisosteus_oculatus
ENSNLEG00000013359CPSF310098.918ENSLAFG00000009467CPSF310097.647Loxodonta_africana
ENSNLEG00000013359CPSF3100100.000ENSMFAG00000001339CPSF3100100.000Macaca_fascicularis
ENSNLEG00000013359CPSF3100100.000ENSMMUG00000018038CPSF3100100.000Macaca_mulatta
ENSNLEG00000013359CPSF310088.717ENSMNEG00000039447CPSF310087.281Macaca_nemestrina
ENSNLEG00000013359CPSF310099.854ENSMLEG00000026825CPSF310099.854Mandrillus_leucophaeus
ENSNLEG00000013359CPSF39197.204ENSMAMG00000003076cpsf39885.567Mastacembelus_armatus
ENSNLEG00000013359CPSF39785.127ENSMAMG00000008835CPSF39985.127Mastacembelus_armatus
ENSNLEG00000013359CPSF39198.280ENSMZEG00005006258CPSF39888.382Maylandia_zebra
ENSNLEG00000013359CPSF39196.360ENSMZEG00005014358cpsf39985.463Maylandia_zebra
ENSNLEG00000013359CPSF310094.900ENSMGAG00000013995CPSF310095.052Meleagris_gallopavo
ENSNLEG00000013359CPSF35897.074ENSMAUG00000000166Cpsf310097.074Mesocricetus_auratus
ENSNLEG00000013359CPSF310093.860ENSMICG00000002363CPSF310093.860Microcebus_murinus
ENSNLEG00000013359CPSF310094.298ENSMOCG00000020067Cpsf310094.298Microtus_ochrogaster
ENSNLEG00000013359CPSF39982.171ENSMMOG00000018212CPSF39882.171Mola_mola
ENSNLEG00000013359CPSF37777.857ENSMMOG00000011923CPSF38477.857Mola_mola
ENSNLEG00000013359CPSF310095.948ENSMODG00000014703CPSF310095.948Monodelphis_domestica
ENSNLEG00000013359CPSF39883.281ENSMALG00000011474CPSF39983.281Monopterus_albus
ENSNLEG00000013359CPSF39196.574ENSMALG00000016416cpsf39985.903Monopterus_albus
ENSNLEG00000013359CPSF310098.538MGP_CAROLIEiJ_G0017640Cpsf310098.538Mus_caroli
ENSNLEG00000013359CPSF310098.538ENSMUSG00000054309Cpsf310098.538Mus_musculus
ENSNLEG00000013359CPSF310098.392MGP_PahariEiJ_G0029397Cpsf310098.392Mus_pahari
ENSNLEG00000013359CPSF310098.538MGP_SPRETEiJ_G0018481Cpsf310098.538Mus_spretus
ENSNLEG00000013359CPSF310098.684ENSMPUG00000013213CPSF310098.684Mustela_putorius_furo
ENSNLEG00000013359CPSF310098.394ENSMLUG00000010636CPSF310098.394Myotis_lucifugus
ENSNLEG00000013359CPSF310098.684ENSNGAG00000019836Cpsf310098.684Nannospalax_galili
ENSNLEG00000013359CPSF39196.360ENSNBRG00000004770cpsf39985.022Neolamprologus_brichardi
ENSNLEG00000013359CPSF39786.190ENSNBRG00000010525CPSF39986.190Neolamprologus_brichardi
ENSNLEG00000013359CPSF38981.416ENSMEUG00000013117-9181.416Notamacropus_eugenii
ENSNLEG00000013359CPSF310089.620ENSOPRG00000008902CPSF310089.620Ochotona_princeps
ENSNLEG00000013359CPSF310096.930ENSODEG00000003129CPSF310096.930Octodon_degus
ENSNLEG00000013359CPSF39196.360ENSONIG00000018812cpsf39985.609Oreochromis_niloticus
ENSNLEG00000013359CPSF38796.277ENSOANG00000008577CPSF310096.277Ornithorhynchus_anatinus
ENSNLEG00000013359CPSF310098.977ENSOCUG00000003728CPSF310098.977Oryctolagus_cuniculus
ENSNLEG00000013359CPSF39195.931ENSORLG00000018854cpsf39983.407Oryzias_latipes
ENSNLEG00000013359CPSF39195.931ENSORLG00020013331cpsf39983.407Oryzias_latipes_hni
ENSNLEG00000013359CPSF39195.931ENSORLG00015011017cpsf39983.407Oryzias_latipes_hsok
ENSNLEG00000013359CPSF39195.931ENSOMEG00000010647cpsf39483.700Oryzias_melastigma
ENSNLEG00000013359CPSF310089.620ENSOGAG00000001680CPSF310089.620Otolemur_garnettii
ENSNLEG00000013359CPSF310099.561ENSOARG00000015073CPSF310099.561Ovis_aries
ENSNLEG00000013359CPSF310099.854ENSPPAG00000042457CPSF310099.854Pan_paniscus
ENSNLEG00000013359CPSF310099.269ENSPPRG00000016790CPSF310099.269Panthera_pardus
ENSNLEG00000013359CPSF310099.227ENSPTIG00000003920CPSF310099.213Panthera_tigris_altaica
ENSNLEG00000013359CPSF310099.854ENSPTRG00000011638CPSF310099.854Pan_troglodytes
ENSNLEG00000013359CPSF310099.854ENSPANG00000016798CPSF310099.854Papio_anubis
ENSNLEG00000013359CPSF39198.283ENSPKIG00000023646cpsf39989.147Paramormyrops_kingsleyae
ENSNLEG00000013359CPSF310094.436ENSPSIG00000016144CPSF310093.704Pelodiscus_sinensis
ENSNLEG00000013359CPSF36379.012ENSPMGG00000015311CPSF39979.012Periophthalmus_magnuspinnatus
ENSNLEG00000013359CPSF38094.203ENSPMGG00000006141-9985.340Periophthalmus_magnuspinnatus
ENSNLEG00000013359CPSF310098.246ENSPEMG00000017668Cpsf310098.246Peromyscus_maniculatus_bairdii
ENSNLEG00000013359CPSF39192.979ENSPMAG00000004841cpsf39990.317Petromyzon_marinus
ENSNLEG00000013359CPSF310097.372ENSPCIG00000009823CPSF39897.546Phascolarctos_cinereus
ENSNLEG00000013359CPSF39196.146ENSPFOG00000015922cpsf39984.604Poecilia_formosa
ENSNLEG00000013359CPSF39197.854ENSPFOG00000010418-9887.629Poecilia_formosa
ENSNLEG00000013359CPSF39196.146ENSPLAG00000000882cpsf39984.604Poecilia_latipinna
ENSNLEG00000013359CPSF36280.446ENSPLAG00000021300-9980.446Poecilia_latipinna
ENSNLEG00000013359CPSF39196.146ENSPMEG00000018309cpsf39984.751Poecilia_mexicana
ENSNLEG00000013359CPSF39198.065ENSPREG00000004482CPSF39882.327Poecilia_reticulata
ENSNLEG00000013359CPSF39881.918ENSPREG00000014875cpsf39982.512Poecilia_reticulata
ENSNLEG00000013359CPSF310095.614ENSPPYG00000012666CPSF310095.614Pongo_abelii
ENSNLEG00000013359CPSF39172.043ENSPCAG00000015042CPSF310063.748Procavia_capensis
ENSNLEG00000013359CPSF38892.199ENSPCOG00000023016CPSF39892.199Propithecus_coquereli
ENSNLEG00000013359CPSF39999.413ENSPVAG00000005324CPSF39999.413Pteropus_vampyrus
ENSNLEG00000013359CPSF39196.360ENSPNYG00000004405cpsf39985.463Pundamilia_nyererei
ENSNLEG00000013359CPSF38196.145ENSPNYG00000021047CPSF39191.529Pundamilia_nyererei
ENSNLEG00000013359CPSF39198.065ENSPNAG00000023060cpsf39887.500Pygocentrus_nattereri
ENSNLEG00000013359CPSF39998.534ENSRNOG00000052418Cpsf39998.534Rattus_norvegicus
ENSNLEG00000013359CPSF310095.209ENSRBIG00000041615CPSF39995.209Rhinopithecus_bieti
ENSNLEG00000013359CPSF310099.854ENSRROG00000033792CPSF310099.854Rhinopithecus_roxellana
ENSNLEG00000013359CPSF38853.079YLR277CYSH19540.805Saccharomyces_cerevisiae
ENSNLEG00000013359CPSF310095.392ENSSBOG00000027263CPSF310093.768Saimiri_boliviensis_boliviensis
ENSNLEG00000013359CPSF310097.661ENSSHAG00000007024CPSF310097.661Sarcophilus_harrisii
ENSNLEG00000013359CPSF39198.073ENSSFOG00015002108cpsf39989.427Scleropages_formosus
ENSNLEG00000013359CPSF39197.639ENSSMAG00000020534CPSF39587.500Scophthalmus_maximus
ENSNLEG00000013359CPSF39198.065ENSSDUG00000018498CPSF39887.941Seriola_dumerili
ENSNLEG00000013359CPSF39196.360ENSSDUG00000002828cpsf39685.463Seriola_dumerili
ENSNLEG00000013359CPSF39198.065ENSSLDG00000005234CPSF39887.941Seriola_lalandi_dorsalis
ENSNLEG00000013359CPSF39196.360ENSSLDG00000008469cpsf39190.847Seriola_lalandi_dorsalis
ENSNLEG00000013359CPSF389100.000ENSSARG00000005186CPSF391100.000Sorex_araneus
ENSNLEG00000013359CPSF310092.012ENSSPUG00000015525CPSF39792.250Sphenodon_punctatus
ENSNLEG00000013359CPSF39198.065ENSSPAG00000002906CPSF39887.647Stegastes_partitus
ENSNLEG00000013359CPSF39196.989ENSSPAG00000018579cpsf39885.420Stegastes_partitus
ENSNLEG00000013359CPSF39999.268ENSSSCG00000020799CPSF39999.268Sus_scrofa
ENSNLEG00000013359CPSF310095.054ENSTGUG00000013016CPSF39995.301Taeniopygia_guttata
ENSNLEG00000013359CPSF36272.973ENSTRUG00000013905CPSF39972.973Takifugu_rubripes
ENSNLEG00000013359CPSF39196.996ENSTRUG00000007030cpsf39784.706Takifugu_rubripes
ENSNLEG00000013359CPSF38593.699ENSTBEG00000002707CPSF38593.699Tupaia_belangeri
ENSNLEG00000013359CPSF38898.387ENSTTRG00000000861CPSF38898.387Tursiops_truncatus
ENSNLEG00000013359CPSF39996.334ENSUAMG00000007535CPSF39896.334Ursus_americanus
ENSNLEG00000013359CPSF310099.382ENSUMAG00000003676CPSF310099.382Ursus_maritimus
ENSNLEG00000013359CPSF39595.603ENSVPAG00000008041CPSF310095.741Vicugna_pacos
ENSNLEG00000013359CPSF310099.415ENSVVUG00000002194CPSF310099.415Vulpes_vulpes
ENSNLEG00000013359CPSF39198.715ENSXETG00000008263cpsf39890.015Xenopus_tropicalis
ENSNLEG00000013359CPSF35778.976ENSXCOG00000000957-8778.976Xiphophorus_couchianus
ENSNLEG00000013359CPSF39196.360ENSXCOG00000019695cpsf39984.897Xiphophorus_couchianus
ENSNLEG00000013359CPSF39196.360ENSXMAG00000009784cpsf39984.604Xiphophorus_maculatus
ENSNLEG00000013359CPSF39197.854ENSXMAG00000027291CPSF39887.776Xiphophorus_maculatus

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