EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSNLEG00000015215 (Gene tree)
Gene ID: 100585149
Gene Symbol: -
Alias: -
Full Name: apolipoprotein B mRNA editing enzyme catalytic subunit 3C
Gene Type: protein_coding
Species: Nomascus_leucogenys
Status: putative
Strand: Minus strand
Length: 24484 bases
Position: chr7b:11618516-11642999
Accession: 100585723
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNLEP00000018464	APOBEC_N	PF08210.11	4.6e-96	1	2
ENSNLEP00000018464	APOBEC_N	PF08210.11	4.6e-96	2	2
ENSNLEP00000018461	APOBEC_N	PF08210.11	1.1e-45	1	1
ENSNLEP00000018464	APOBEC_C	PF05240.14	3.2e-60	1	2
ENSNLEP00000018464	APOBEC_C	PF05240.14	3.2e-60	2	2
ENSNLEP00000018461	APOBEC_C	PF05240.14	5.9e-30	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNLET00000019386	-	1405	XM_003264768	ENSNLEP00000018461	199 (aa)	XP_003264816	G1RYY4
ENSNLET00000019389	-	1461	XM_012507816	ENSNLEP00000018464	486 (aa)	-	G1RYY7

Gene Model

Click here to download ENSNLEG00000015215's gene model file

Pathways

Pathway ID	Pathway Name	Source
nle05170	Human immunodeficiency virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSNLEG00000015215's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSNLEG00000015215	-	91	48.276	ENSNLEG00000018922	-	98	48.276
ENSNLEG00000015215	-	84	30.409	ENSNLEG00000005057	APOBEC2	80	32.222
ENSNLEG00000015215	-	95	42.857	ENSNLEG00000001917	AICDA	89	43.915
ENSNLEG00000015215	-	80	53.846	ENSNLEG00000035811	-	99	53.846
ENSNLEG00000015215	-	94	33.838	ENSNLEG00000015218	-	88	33.333
ENSNLEG00000015215	-	94	38.021	ENSNLEG00000028392	APOBEC3C	100	49.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNLEG00000015215	-	100	90.955	ENSG00000128383	APOBEC3A	100	90.955	Homo_sapiens
ENSNLEG00000015215	-	99	81.563	ENSG00000179750	APOBEC3B	98	84.375	Homo_sapiens
ENSNLEG00000015215	-	85	60.947	ENSCJAG00000012500	-	97	57.459	Callithrix_jacchus
ENSNLEG00000015215	-	100	56.931	ENSTSYG00000035593	-	100	56.931	Carlito_syrichta
ENSNLEG00000015215	-	95	66.146	ENSCCAG00000027450	-	99	60.358	Cebus_capucinus
ENSNLEG00000015215	-	100	80.693	ENSCATG00000013527	-	100	80.693	Cercocebus_atys
ENSNLEG00000015215	-	99	81.563	ENSCSAG00000006445	-	99	82.164	Chlorocebus_sabaeus
ENSNLEG00000015215	-	72	76.190	ENSCSAG00000018401	-	70	79.592	Chlorocebus_sabaeus
ENSNLEG00000015215	-	100	82.915	ENSCANG00000030513	-	100	82.915	Colobus_angolensis_palliatus
ENSNLEG00000015215	-	96	84.896	ENSGGOG00000006721	APOBEC3B	98	84.896	Gorilla_gorilla
ENSNLEG00000015215	-	100	78.713	ENSMFAG00000008980	APOBEC3A	99	80.402	Macaca_fascicularis
ENSNLEG00000015215	-	100	79.208	ENSMMUG00000042504	APOBEC3A	100	79.208	Macaca_mulatta
ENSNLEG00000015215	-	99	81.443	ENSMMUG00000004015	-	99	82.487	Macaca_mulatta
ENSNLEG00000015215	-	93	77.857	ENSMNEG00000043211	-	95	81.765	Macaca_nemestrina
ENSNLEG00000015215	-	95	80.729	ENSMLEG00000004809	-	99	83.204	Mandrillus_leucophaeus
ENSNLEG00000015215	-	96	88.542	ENSPPAG00000009288	APOBEC3B	98	88.542	Pan_paniscus
ENSNLEG00000015215	-	99	89.899	ENSPTRG00000014384	APOBEC3B	99	89.899	Pan_troglodytes
ENSNLEG00000015215	-	100	79.208	ENSPANG00000006941	APOBEC3B	100	79.208	Papio_anubis
ENSNLEG00000015215	-	96	82.199	ENSPPYG00000011831	-	100	85.204	Pongo_abelii
ENSNLEG00000015215	-	77	58.974	ENSPCOG00000017606	-	98	58.974	Propithecus_coquereli
ENSNLEG00000015215	-	100	81.910	ENSRBIG00000042829	-	100	83.957	Rhinopithecus_bieti
ENSNLEG00000015215	-	100	80.905	ENSRROG00000028773	APOBEC3G	100	83.957	Rhinopithecus_roxellana