EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSNLEG00000017171 (Gene tree)
Gene ID: 100587229
Gene Symbol: SMG6
Alias: C17orf31|EST1A|KIAA0732|SMG-6
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Nomascus_leucogenys
Status: putative
Strand: Plus strand
Length: 243409 bases
Position: chr19:79227935-79471343
Accession: 100587229
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNLEP00000020872	EST1	PF10374.9	8.3e-15	1	1
ENSNLEP00000020872	EST1_DNA_bind	PF10373.9	2.4e-60	1	1
ENSNLEP00000030126	EST1_DNA_bind	PF10373.9	7.7e-18	1	1
ENSNLEP00000030126	PIN_4	PF13638.6	1.3e-21	1	1
ENSNLEP00000020872	PIN_4	PF13638.6	6.5e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNLET00000021915	SMG6-201	4197	XM_003277821	ENSNLEP00000020872	1398 (aa)	XP_003277869	G1S5T4
ENSNLET00000033912	SMG6-202	3468	XM_004091567	ENSNLEP00000030126	511 (aa)	XP_004091615	A0A2I3GFP0

Gene Model

Click here to download ENSNLEG00000017171's gene model file

Pathways

Pathway ID	Pathway Name	Source
nle03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSNLEG00000017171's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNLEG00000017171	SMG6	100	99.804	ENSG00000070366	SMG6	100	99.804	Homo_sapiens
ENSNLEG00000017171	SMG6	100	58.135	ENSAPOG00000019448	smg6	74	54.926	Acanthochromis_polyacanthus
ENSNLEG00000017171	SMG6	100	97.456	ENSAMEG00000007632	SMG6	98	93.329	Ailuropoda_melanoleuca
ENSNLEG00000017171	SMG6	100	60.526	ENSACIG00000012997	smg6	97	49.605	Amphilophus_citrinellus
ENSNLEG00000017171	SMG6	100	57.770	ENSAOCG00000002630	smg6	74	55.078	Amphiprion_ocellaris
ENSNLEG00000017171	SMG6	100	57.770	ENSAPEG00000019101	smg6	74	55.234	Amphiprion_percula
ENSNLEG00000017171	SMG6	100	58.684	ENSATEG00000006483	smg6	73	55.399	Anabas_testudineus
ENSNLEG00000017171	SMG6	86	57.583	ENSACAG00000011783	SMG6	97	58.947	Anolis_carolinensis
ENSNLEG00000017171	SMG6	100	98.434	ENSANAG00000035760	SMG6	98	95.552	Aotus_nancymaae
ENSNLEG00000017171	SMG6	100	58.640	ENSACLG00000005288	smg6	84	53.675	Astatotilapia_calliptera
ENSNLEG00000017171	SMG6	100	62.405	ENSAMXG00000017326	smg6	98	50.980	Astyanax_mexicanus
ENSNLEG00000017171	SMG6	100	97.065	ENSBTAG00000000267	SMG6	98	93.213	Bos_taurus
ENSNLEG00000017171	SMG6	100	98.239	ENSCJAG00000001820	SMG6	98	94.978	Callithrix_jacchus
ENSNLEG00000017171	SMG6	100	97.260	ENSCAFG00000019260	SMG6	98	92.970	Canis_familiaris
ENSNLEG00000017171	SMG6	100	97.260	ENSCAFG00020009770	SMG6	98	92.970	Canis_lupus_dingo
ENSNLEG00000017171	SMG6	100	97.456	ENSCHIG00000021998	SMG6	98	92.468	Capra_hircus
ENSNLEG00000017171	SMG6	100	97.652	ENSTSYG00000003406	SMG6	100	97.652	Carlito_syrichta
ENSNLEG00000017171	SMG6	99	77.482	ENSCAPG00000016197	SMG6	99	82.904	Cavia_aperea
ENSNLEG00000017171	SMG6	100	96.869	ENSCPOG00000014878	SMG6	97	92.982	Cavia_porcellus
ENSNLEG00000017171	SMG6	100	98.434	ENSCCAG00000035801	SMG6	98	95.624	Cebus_capucinus
ENSNLEG00000017171	SMG6	100	98.826	ENSCATG00000031956	SMG6	98	97.059	Cercocebus_atys
ENSNLEG00000017171	SMG6	100	97.260	ENSCLAG00000006748	SMG6	100	92.435	Chinchilla_lanigera
ENSNLEG00000017171	SMG6	100	99.217	ENSCSAG00000013800	SMG6	98	97.489	Chlorocebus_sabaeus
ENSNLEG00000017171	SMG6	52	98.507	ENSCHOG00000005024	-	66	98.507	Choloepus_hoffmanni
ENSNLEG00000017171	SMG6	100	82.192	ENSCPBG00000020369	SMG6	98	72.760	Chrysemys_picta_bellii
ENSNLEG00000017171	SMG6	99	34.942	ENSCING00000010099	-	99	35.373	Ciona_intestinalis
ENSNLEG00000017171	SMG6	54	37.456	ENSCSAVG00000007638	-	99	37.943	Ciona_savignyi
ENSNLEG00000017171	SMG6	100	99.413	ENSCANG00000031764	SMG6	100	99.413	Colobus_angolensis_palliatus
ENSNLEG00000017171	SMG6	54	86.262	ENSCGRG00001019595	Smg6	95	86.262	Cricetulus_griseus_chok1gshd
ENSNLEG00000017171	SMG6	99	84.654	ENSCGRG00000007782	Smg6	100	84.798	Cricetulus_griseus_crigri
ENSNLEG00000017171	SMG6	100	61.017	ENSCSEG00000012757	smg6	83	52.132	Cynoglossus_semilaevis
ENSNLEG00000017171	SMG6	100	57.559	ENSCVAG00000012789	smg6	74	53.768	Cyprinodon_variegatus
ENSNLEG00000017171	SMG6	100	61.654	ENSDARG00000100481	smg6	76	56.672	Danio_rerio
ENSNLEG00000017171	SMG6	100	97.260	ENSDNOG00000048283	SMG6	98	92.468	Dasypus_novemcinctus
ENSNLEG00000017171	SMG6	100	98.239	ENSDORG00000016614	Smg6	94	97.748	Dipodomys_ordii
ENSNLEG00000017171	SMG6	93	100.000	ENSETEG00000016790	SMG6	91	100.000	Echinops_telfairi
ENSNLEG00000017171	SMG6	99	55.307	ENSEBUG00000005059	smg6	66	49.758	Eptatretus_burgeri
ENSNLEG00000017171	SMG6	99	98.035	ENSEASG00005009318	SMG6	97	93.678	Equus_asinus_asinus
ENSNLEG00000017171	SMG6	99	97.839	ENSECAG00000006519	SMG6	97	93.593	Equus_caballus
ENSNLEG00000017171	SMG6	99	85.294	ENSEEUG00000003493	SMG6	99	81.792	Erinaceus_europaeus
ENSNLEG00000017171	SMG6	100	61.654	ENSELUG00000005934	smg6	69	55.394	Esox_lucius
ENSNLEG00000017171	SMG6	100	97.847	ENSFCAG00000028817	SMG6	98	94.189	Felis_catus
ENSNLEG00000017171	SMG6	100	83.366	ENSFALG00000006538	SMG6	100	71.744	Ficedula_albicollis
ENSNLEG00000017171	SMG6	100	97.065	ENSFDAG00000015106	SMG6	98	91.894	Fukomys_damarensis
ENSNLEG00000017171	SMG6	100	56.307	ENSFHEG00000013282	smg6	75	53.266	Fundulus_heteroclitus
ENSNLEG00000017171	SMG6	100	52.852	ENSGMOG00000019077	smg6	68	68.692	Gadus_morhua
ENSNLEG00000017171	SMG6	100	83.398	ENSGALG00000003108	SMG6	96	71.459	Gallus_gallus
ENSNLEG00000017171	SMG6	100	57.299	ENSGAFG00000000379	smg6	74	54.396	Gambusia_affinis
ENSNLEG00000017171	SMG6	100	59.659	ENSGACG00000020521	smg6	100	53.909	Gasterosteus_aculeatus
ENSNLEG00000017171	SMG6	100	82.387	ENSGAGG00000025617	SMG6	100	72.210	Gopherus_agassizii
ENSNLEG00000017171	SMG6	100	100.000	ENSGGOG00000017156	SMG6	98	98.278	Gorilla_gorilla
ENSNLEG00000017171	SMG6	100	58.640	ENSHBUG00000021311	smg6	78	54.173	Haplochromis_burtoni
ENSNLEG00000017171	SMG6	100	97.260	ENSHGLG00000012882	SMG6	98	91.404	Heterocephalus_glaber_female
ENSNLEG00000017171	SMG6	100	97.260	ENSHGLG00100017815	SMG6	98	91.476	Heterocephalus_glaber_male
ENSNLEG00000017171	SMG6	100	59.134	ENSHCOG00000008761	smg6	83	59.009	Hippocampus_comes
ENSNLEG00000017171	SMG6	100	61.860	ENSIPUG00000012493	smg6	75	54.760	Ictalurus_punctatus
ENSNLEG00000017171	SMG6	100	98.434	ENSSTOG00000028127	SMG6	95	97.321	Ictidomys_tridecemlineatus
ENSNLEG00000017171	SMG6	78	88.139	ENSJJAG00000015367	Smg6	93	86.182	Jaculus_jaculus
ENSNLEG00000017171	SMG6	100	59.273	ENSKMAG00000000279	smg6	76	53.969	Kryptolebias_marmoratus
ENSNLEG00000017171	SMG6	100	56.569	ENSLBEG00000002184	smg6	76	53.212	Labrus_bergylta
ENSNLEG00000017171	SMG6	56	58.456	ENSLACG00000000806	-	98	58.701	Latimeria_chalumnae
ENSNLEG00000017171	SMG6	91	80.000	ENSLACG00000003276	SMG6	100	80.000	Latimeria_chalumnae
ENSNLEG00000017171	SMG6	100	67.823	ENSLOCG00000006448	smg6	99	54.907	Lepisosteus_oculatus
ENSNLEG00000017171	SMG6	100	97.065	ENSLAFG00000001261	SMG6	98	92.181	Loxodonta_africana
ENSNLEG00000017171	SMG6	100	99.413	ENSMFAG00000003394	SMG6	98	97.633	Macaca_fascicularis
ENSNLEG00000017171	SMG6	100	99.413	ENSMMUG00000023161	SMG6	98	97.561	Macaca_mulatta
ENSNLEG00000017171	SMG6	100	99.413	ENSMNEG00000044592	SMG6	98	92.418	Macaca_nemestrina
ENSNLEG00000017171	SMG6	100	99.413	ENSMLEG00000029353	SMG6	99	95.347	Mandrillus_leucophaeus
ENSNLEG00000017171	SMG6	100	59.347	ENSMAMG00000020119	smg6	97	49.903	Mastacembelus_armatus
ENSNLEG00000017171	SMG6	100	58.640	ENSMZEG00005024736	smg6	77	53.921	Maylandia_zebra
ENSNLEG00000017171	SMG6	73	66.087	ENSMGAG00000005401	-	97	66.087	Meleagris_gallopavo
ENSNLEG00000017171	SMG6	72	85.014	ENSMGAG00000017200	-	100	85.014	Meleagris_gallopavo
ENSNLEG00000017171	SMG6	100	98.239	ENSMICG00000012913	SMG6	98	94.692	Microcebus_murinus
ENSNLEG00000017171	SMG6	100	60.646	ENSMMOG00000010883	smg6	90	50.974	Mola_mola
ENSNLEG00000017171	SMG6	99	41.683	ENSMODG00000024410	-	99	41.683	Monodelphis_domestica
ENSNLEG00000017171	SMG6	87	52.361	ENSMODG00000024395	-	98	52.790	Monodelphis_domestica
ENSNLEG00000017171	SMG6	99	41.487	ENSMODG00000024460	-	99	41.879	Monodelphis_domestica
ENSNLEG00000017171	SMG6	99	41.683	ENSMODG00000024463	-	99	42.074	Monodelphis_domestica
ENSNLEG00000017171	SMG6	100	95.303	ENSMODG00000010622	SMG6	98	85.397	Monodelphis_domestica
ENSNLEG00000017171	SMG6	100	57.664	ENSMALG00000001106	smg6	73	55.089	Monopterus_albus
ENSNLEG00000017171	SMG6	100	97.456	MGP_CAROLIEiJ_G0016729	Smg6	96	94.135	Mus_caroli
ENSNLEG00000017171	SMG6	100	97.456	ENSMUSG00000038290	Smg6	95	94.248	Mus_musculus
ENSNLEG00000017171	SMG6	100	97.260	MGP_PahariEiJ_G0017866	Smg6	95	94.248	Mus_pahari
ENSNLEG00000017171	SMG6	100	97.456	MGP_SPRETEiJ_G0017572	Smg6	96	93.421	Mus_spretus
ENSNLEG00000017171	SMG6	100	97.065	ENSMPUG00000013046	SMG6	98	93.113	Mustela_putorius_furo
ENSNLEG00000017171	SMG6	100	97.652	ENSMLUG00000005739	SMG6	98	93.357	Myotis_lucifugus
ENSNLEG00000017171	SMG6	100	96.282	ENSNGAG00000007287	Smg6	99	90.778	Nannospalax_galili
ENSNLEG00000017171	SMG6	100	58.659	ENSNBRG00000009511	smg6	85	53.244	Neolamprologus_brichardi
ENSNLEG00000017171	SMG6	100	94.325	ENSMEUG00000015804	SMG6	99	82.171	Notamacropus_eugenii
ENSNLEG00000017171	SMG6	92	84.188	ENSOPRG00000000579	SMG6	85	97.368	Ochotona_princeps
ENSNLEG00000017171	SMG6	100	96.875	ENSODEG00000008038	SMG6	98	85.244	Octodon_degus
ENSNLEG00000017171	SMG6	100	58.824	ENSONIG00000005594	smg6	98	52.150	Oreochromis_niloticus
ENSNLEG00000017171	SMG6	59	84.333	ENSOANG00000030166	-	90	84.333	Ornithorhynchus_anatinus
ENSNLEG00000017171	SMG6	100	97.461	ENSOCUG00000013018	SMG6	98	92.622	Oryctolagus_cuniculus
ENSNLEG00000017171	SMG6	100	57.091	ENSORLG00000003317	smg6	74	54.702	Oryzias_latipes
ENSNLEG00000017171	SMG6	100	57.221	ENSORLG00020015343	smg6	74	54.317	Oryzias_latipes_hni
ENSNLEG00000017171	SMG6	100	56.727	ENSORLG00015020454	smg6	74	54.503	Oryzias_latipes_hsok
ENSNLEG00000017171	SMG6	100	56.679	ENSOMEG00000010838	smg6	75	53.858	Oryzias_melastigma
ENSNLEG00000017171	SMG6	100	97.847	ENSOGAG00000004483	SMG6	98	93.978	Otolemur_garnettii
ENSNLEG00000017171	SMG6	100	97.260	ENSOARG00000015076	SMG6	100	92.780	Ovis_aries
ENSNLEG00000017171	SMG6	100	99.804	ENSPPAG00000043296	SMG6	98	97.991	Pan_paniscus
ENSNLEG00000017171	SMG6	100	97.847	ENSPPRG00000014581	SMG6	98	94.261	Panthera_pardus
ENSNLEG00000017171	SMG6	100	97.847	ENSPTIG00000008925	SMG6	100	97.847	Panthera_tigris_altaica
ENSNLEG00000017171	SMG6	100	99.804	ENSPTRG00000008544	SMG6	100	99.804	Pan_troglodytes
ENSNLEG00000017171	SMG6	100	99.413	ENSPANG00000024588	SMG6	98	97.418	Papio_anubis
ENSNLEG00000017171	SMG6	90	70.195	ENSPSIG00000006660	SMG6	97	70.272	Pelodiscus_sinensis
ENSNLEG00000017171	SMG6	100	59.626	ENSPMGG00000000844	smg6	89	60.870	Periophthalmus_magnuspinnatus
ENSNLEG00000017171	SMG6	100	97.652	ENSPEMG00000020707	Smg6	97	94.248	Peromyscus_maniculatus_bairdii
ENSNLEG00000017171	SMG6	100	59.590	ENSPFOG00000012035	smg6	97	51.931	Poecilia_formosa
ENSNLEG00000017171	SMG6	100	57.299	ENSPLAG00000017660	smg6	74	54.216	Poecilia_latipinna
ENSNLEG00000017171	SMG6	100	57.143	ENSPMEG00000000258	smg6	74	54.610	Poecilia_mexicana
ENSNLEG00000017171	SMG6	100	57.299	ENSPREG00000010066	smg6	74	54.396	Poecilia_reticulata
ENSNLEG00000017171	SMG6	99	92.341	ENSPPYG00000007790	SMG6	98	92.341	Pongo_abelii
ENSNLEG00000017171	SMG6	99	88.627	ENSPCAG00000000552	SMG6	98	87.661	Procavia_capensis
ENSNLEG00000017171	SMG6	100	98.239	ENSPCOG00000020925	SMG6	98	94.548	Propithecus_coquereli
ENSNLEG00000017171	SMG6	100	97.065	ENSPVAG00000002159	SMG6	84	90.160	Pteropus_vampyrus
ENSNLEG00000017171	SMG6	100	61.494	ENSPNYG00000024151	smg6	83	55.812	Pundamilia_nyererei
ENSNLEG00000017171	SMG6	100	62.709	ENSPNAG00000015480	smg6	87	62.877	Pygocentrus_nattereri
ENSNLEG00000017171	SMG6	100	97.260	ENSRNOG00000003041	Smg6	96	94.721	Rattus_norvegicus
ENSNLEG00000017171	SMG6	100	99.022	ENSRBIG00000024746	SMG6	98	97.202	Rhinopithecus_bieti
ENSNLEG00000017171	SMG6	100	99.022	ENSRROG00000030423	SMG6	100	99.022	Rhinopithecus_roxellana
ENSNLEG00000017171	SMG6	100	98.434	ENSSBOG00000022518	SMG6	98	93.831	Saimiri_boliviensis_boliviensis
ENSNLEG00000017171	SMG6	100	94.325	ENSSHAG00000010045	SMG6	98	84.786	Sarcophilus_harrisii
ENSNLEG00000017171	SMG6	97	40.637	ENSSHAG00000000380	-	99	39.802	Sarcophilus_harrisii
ENSNLEG00000017171	SMG6	100	63.738	ENSSFOG00015005436	smg6	75	54.713	Scleropages_formosus
ENSNLEG00000017171	SMG6	100	57.169	ENSSMAG00000019777	smg6	73	54.638	Scophthalmus_maximus
ENSNLEG00000017171	SMG6	100	58.106	ENSSDUG00000016412	smg6	74	55.304	Seriola_dumerili
ENSNLEG00000017171	SMG6	91	56.064	ENSSLDG00000020747	smg6	77	54.288	Seriola_lalandi_dorsalis
ENSNLEG00000017171	SMG6	100	81.518	ENSSPUG00000007152	SMG6	98	70.471	Sphenodon_punctatus
ENSNLEG00000017171	SMG6	100	58.059	ENSSPAG00000015633	smg6	74	54.788	Stegastes_partitus
ENSNLEG00000017171	SMG6	100	96.673	ENSSSCG00000017826	SMG6	99	92.173	Sus_scrofa
ENSNLEG00000017171	SMG6	100	84.149	ENSTGUG00000005836	SMG6	98	72.009	Taeniopygia_guttata
ENSNLEG00000017171	SMG6	100	58.835	ENSTRUG00000000358	smg6	95	49.389	Takifugu_rubripes
ENSNLEG00000017171	SMG6	100	60.037	ENSTNIG00000016164	smg6	98	50.305	Tetraodon_nigroviridis
ENSNLEG00000017171	SMG6	100	88.650	ENSTBEG00000011424	SMG6	98	88.666	Tupaia_belangeri
ENSNLEG00000017171	SMG6	100	89.824	ENSTTRG00000001175	SMG6	89	91.818	Tursiops_truncatus
ENSNLEG00000017171	SMG6	100	97.082	ENSUAMG00000025152	SMG6	100	93.732	Ursus_americanus
ENSNLEG00000017171	SMG6	100	97.652	ENSUMAG00000009306	SMG6	100	94.079	Ursus_maritimus
ENSNLEG00000017171	SMG6	84	92.593	ENSVPAG00000000225	SMG6	86	92.593	Vicugna_pacos
ENSNLEG00000017171	SMG6	100	97.260	ENSVVUG00000021727	SMG6	98	92.826	Vulpes_vulpes
ENSNLEG00000017171	SMG6	100	69.052	ENSXETG00000023799	SMG6	99	58.989	Xenopus_tropicalis
ENSNLEG00000017171	SMG6	100	60.571	ENSXCOG00000009867	smg6	74	55.299	Xiphophorus_couchianus
ENSNLEG00000017171	SMG6	100	57.482	ENSXMAG00000010321	smg6	74	54.631	Xiphophorus_maculatus