EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSNLEG00000019300 (Gene tree)
Gene ID: 100607129
Gene Symbol: PABPC4L
Alias: -
Full Name: poly(A) binding protein cytoplasmic 4 like
Gene Type: protein_coding
Species: Nomascus_leucogenys
Status: putative
Strand: Plus strand
Length: 1113 bases
Position: chr7b:22459953-22461065
Accession: 100607129
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNLEP00000034111	RRM_5	PF13893.6	1.1e-14	1	3
ENSNLEP00000034111	RRM_5	PF13893.6	1.1e-14	2	3
ENSNLEP00000034111	RRM_5	PF13893.6	1.1e-14	3	3
ENSNLEP00000034111	RRM_1	PF00076.22	1.2e-85	1	4
ENSNLEP00000034111	RRM_1	PF00076.22	1.2e-85	2	4
ENSNLEP00000034111	RRM_1	PF00076.22	1.2e-85	3	4
ENSNLEP00000034111	RRM_1	PF00076.22	1.2e-85	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNLET00000024325	PABPC4L-201	1113	XM_003264663	ENSNLEP00000034111	370 (aa)	XP_003264711	A0A2I3GS05

Gene Model

Click here to download ENSNLEG00000019300's gene model file

Pathways

Pathway ID	Pathway Name	Source
nle03013	RNA transport	KEGG
nle03015	mRNA surveillance pathway	KEGG
nle03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSNLEG00000019300's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSNLEG00000019300	PABPC4L	72	30.899	ENSNLEG00000010858	-	56	30.769
ENSNLEG00000019300	PABPC4L	86	31.707	ENSNLEG00000001325	ELAVL1	85	31.707
ENSNLEG00000019300	PABPC4L	99	48.108	ENSNLEG00000030011	-	54	48.108
ENSNLEG00000019300	PABPC4L	82	40.789	ENSNLEG00000028027	-	89	44.000
ENSNLEG00000019300	PABPC4L	99	67.568	ENSNLEG00000018338	PABPC3	60	68.320
ENSNLEG00000019300	PABPC4L	66	32.927	ENSNLEG00000009822	TRNAU1AP	86	37.500
ENSNLEG00000019300	PABPC4L	98	61.517	ENSNLEG00000035086	PABPC5	96	61.538
ENSNLEG00000019300	PABPC4L	98	63.265	ENSNLEG00000018128	-	98	63.265
ENSNLEG00000019300	PABPC4L	63	34.831	ENSNLEG00000028393	-	93	32.895
ENSNLEG00000019300	PABPC4L	56	34.722	ENSNLEG00000014638	CELF1	83	34.722
ENSNLEG00000019300	PABPC4L	59	40.789	ENSNLEG00000019350	-	55	40.789
ENSNLEG00000019300	PABPC4L	97	40.341	ENSNLEG00000000537	-	66	40.341
ENSNLEG00000019300	PABPC4L	92	49.057	ENSNLEG00000034154	-	76	49.057
ENSNLEG00000019300	PABPC4L	99	75.405	ENSNLEG00000011928	PABPC4	61	75.405
ENSNLEG00000019300	PABPC4L	99	71.892	ENSNLEG00000003142	-	60	71.892
ENSNLEG00000019300	PABPC4L	93	60.938	ENSNLEG00000034666	-	68	60.938
ENSNLEG00000019300	PABPC4L	71	31.285	ENSNLEG00000017659	HNRNPA1	64	31.285

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNLEG00000019300	PABPC4L	100	99.459	ENSG00000254535	PABPC4L	100	99.459	Homo_sapiens
ENSNLEG00000019300	PABPC4L	100	96.486	ENSANAG00000017199	PABPC4L	87	96.486	Aotus_nancymaae
ENSNLEG00000019300	PABPC4L	99	89.431	ENSBTAG00000046902	PABPC4L	99	89.431	Bos_taurus
ENSNLEG00000019300	PABPC4L	100	96.757	ENSCJAG00000045332	PABPC4L	86	96.757	Callithrix_jacchus
ENSNLEG00000019300	PABPC4L	99	73.913	ENSCAFG00020019182	-	54	73.913	Canis_lupus_dingo
ENSNLEG00000019300	PABPC4L	99	89.431	ENSCHIG00000007231	PABPC4L	99	89.431	Capra_hircus
ENSNLEG00000019300	PABPC4L	98	80.597	ENSCAPG00000000555	PABPC4L	100	80.597	Cavia_aperea
ENSNLEG00000019300	PABPC4L	100	78.108	ENSCPOG00000033167	PABPC4L	100	78.108	Cavia_porcellus
ENSNLEG00000019300	PABPC4L	100	96.757	ENSCCAG00000031681	PABPC4L	86	96.757	Cebus_capucinus
ENSNLEG00000019300	PABPC4L	100	83.514	ENSCLAG00000017628	PABPC4L	100	83.514	Chinchilla_lanigera
ENSNLEG00000019300	PABPC4L	100	97.027	ENSCANG00000037677	PABPC4L	100	97.027	Colobus_angolensis_palliatus
ENSNLEG00000019300	PABPC4L	100	82.703	ENSCGRG00001002070	Pabpc4l	100	82.703	Cricetulus_griseus_chok1gshd
ENSNLEG00000019300	PABPC4L	100	82.703	ENSCGRG00000020086	Pabpc4l	100	82.703	Cricetulus_griseus_crigri
ENSNLEG00000019300	PABPC4L	100	91.892	ENSDNOG00000031077	PABPC4L	95	91.892	Dasypus_novemcinctus
ENSNLEG00000019300	PABPC4L	99	89.973	ENSEASG00005007883	PABPC4L	99	89.973	Equus_asinus_asinus
ENSNLEG00000019300	PABPC4L	99	90.244	ENSECAG00000031416	PABPC4L	99	90.244	Equus_caballus
ENSNLEG00000019300	PABPC4L	99	89.973	ENSFCAG00000028270	PABPC4L	99	89.973	Felis_catus
ENSNLEG00000019300	PABPC4L	99	83.469	ENSFDAG00000019606	PABPC4L	99	83.469	Fukomys_damarensis
ENSNLEG00000019300	PABPC4L	100	99.459	ENSGGOG00000024991	PABPC4L	100	99.459	Gorilla_gorilla
ENSNLEG00000019300	PABPC4L	99	83.740	ENSHGLG00000020104	PABPC4L	99	83.740	Heterocephalus_glaber_female
ENSNLEG00000019300	PABPC4L	99	83.740	ENSHGLG00100020648	PABPC4L	99	83.740	Heterocephalus_glaber_male
ENSNLEG00000019300	PABPC4L	100	87.332	ENSSTOG00000019472	PABPC4L	99	87.332	Ictidomys_tridecemlineatus
ENSNLEG00000019300	PABPC4L	99	82.656	ENSJJAG00000004090	Pabpc4l	99	82.656	Jaculus_jaculus
ENSNLEG00000019300	PABPC4L	100	82.973	ENSMAUG00000016313	Pabpc4l	100	82.973	Mesocricetus_auratus
ENSNLEG00000019300	PABPC4L	100	95.135	ENSMICG00000029683	PABPC4L	100	95.135	Microcebus_murinus
ENSNLEG00000019300	PABPC4L	100	84.054	ENSMOCG00000007551	Pabpc4l	100	84.054	Microtus_ochrogaster
ENSNLEG00000019300	PABPC4L	100	80.811	MGP_CAROLIEiJ_G0024968	Pabpc4l	100	80.811	Mus_caroli
ENSNLEG00000019300	PABPC4L	100	81.081	ENSMUSG00000090919	Pabpc4l	100	81.081	Mus_musculus
ENSNLEG00000019300	PABPC4L	100	81.351	MGP_PahariEiJ_G0026409	Pabpc4l	100	81.395	Mus_pahari
ENSNLEG00000019300	PABPC4L	100	80.541	MGP_SPRETEiJ_G0025903	Pabpc4l	100	80.541	Mus_spretus
ENSNLEG00000019300	PABPC4L	99	79.133	ENSMLUG00000008254	PABPC4L	99	79.133	Myotis_lucifugus
ENSNLEG00000019300	PABPC4L	100	87.297	ENSNGAG00000001502	Pabpc4l	100	87.297	Nannospalax_galili
ENSNLEG00000019300	PABPC4L	100	87.297	ENSOGAG00000026166	PABPC4L	100	87.297	Otolemur_garnettii
ENSNLEG00000019300	PABPC4L	99	99.690	ENSPPAG00000043745	PABPC4L	93	99.690	Pan_paniscus
ENSNLEG00000019300	PABPC4L	99	89.431	ENSPPRG00000018628	PABPC4L	99	89.431	Panthera_pardus
ENSNLEG00000019300	PABPC4L	99	89.973	ENSPTIG00000010106	PABPC4L	99	89.973	Panthera_tigris_altaica
ENSNLEG00000019300	PABPC4L	99	99.690	ENSPTRG00000045513	-	78	99.690	Pan_troglodytes
ENSNLEG00000019300	PABPC4L	100	82.973	ENSPEMG00000012565	Pabpc4l	100	82.973	Peromyscus_maniculatus_bairdii
ENSNLEG00000019300	PABPC4L	100	95.135	ENSPCOG00000025578	PABPC4L	100	95.135	Propithecus_coquereli
ENSNLEG00000019300	PABPC4L	100	81.622	ENSRNOG00000029749	Pabpc4l	100	81.622	Rattus_norvegicus
ENSNLEG00000019300	PABPC4L	100	95.946	ENSRBIG00000030229	PABPC4L	100	95.946	Rhinopithecus_bieti
ENSNLEG00000019300	PABPC4L	100	95.676	ENSRROG00000020367	PABPC4L	100	95.676	Rhinopithecus_roxellana
ENSNLEG00000019300	PABPC4L	100	94.865	ENSSBOG00000016382	PABPC4L	100	94.865	Saimiri_boliviensis_boliviensis
ENSNLEG00000019300	PABPC4L	99	84.011	ENSSSCG00000009067	PABPC4L	99	84.011	Sus_scrofa
ENSNLEG00000019300	PABPC4L	99	89.431	ENSUAMG00000001289	PABPC4L	99	89.431	Ursus_americanus
ENSNLEG00000019300	PABPC4L	99	89.431	ENSUMAG00000014887	PABPC4L	99	89.431	Ursus_maritimus
ENSNLEG00000019300	PABPC4L	87	76.074	ENSVVUG00000011060	-	74	76.074	Vulpes_vulpes