EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSNLEG00000028392 (Gene tree)
Gene ID: 100585723
Gene Symbol: APOBEC3C
Alias: -
Full Name: Nomascus leucogenys apolipoprotein B mRNA editing enzyme catalytic subunit 3C (APOBEC3C)%2C mRNA.
Gene Type: protein_coding
Species: Nomascus_leucogenys
Status: putative
Strand: Minus strand
Length: 6213 bases
Position: chr7b:11596719-11602931
Accession: NM_001345971
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNLEP00000046008	APOBEC_N	PF08210.11	1.8e-59	1	1
ENSNLEP00000046008	APOBEC_C	PF05240.14	2.1e-33	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNLET00000035447	-	2793	XM_004088427	ENSNLEP00000046008	190 (aa)	XP_004088475	A0A2I3HQY4

Gene Model

Click here to download ENSNLEG00000028392's gene model file

Pathways

Pathway ID	Pathway Name	Source
nle05170	Human immunodeficiency virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSNLEG00000028392's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSNLEG00000028392	APOBEC3C	96	35.450	ENSNLEG00000015218	-	86	35.450
ENSNLEG00000028392	APOBEC3C	91	43.103	ENSNLEG00000001917	AICDA	86	43.103
ENSNLEG00000028392	APOBEC3C	100	62.632	ENSNLEG00000035811	-	100	62.632
ENSNLEG00000028392	APOBEC3C	93	34.595	ENSNLEG00000005057	APOBEC2	79	34.595
ENSNLEG00000028392	APOBEC3C	96	43.023	ENSNLEG00000018922	-	96	43.023
ENSNLEG00000028392	APOBEC3C	100	49.000	ENSNLEG00000015215	-	94	38.021

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNLEG00000028392	APOBEC3C	100	82.105	ENSG00000244509	APOBEC3C	100	82.105	Homo_sapiens
ENSNLEG00000028392	APOBEC3C	100	75.806	ENSG00000128394	APOBEC3F	100	75.806	Homo_sapiens
ENSNLEG00000028392	APOBEC3C	100	74.211	ENSG00000243811	APOBEC3D	100	74.211	Homo_sapiens
ENSNLEG00000028392	APOBEC3C	100	67.368	ENSANAG00000030088	-	97	66.667	Aotus_nancymaae
ENSNLEG00000028392	APOBEC3C	69	66.667	ENSCJAG00000015317	-	100	66.667	Callithrix_jacchus
ENSNLEG00000028392	APOBEC3C	98	47.917	ENSCAFG00020002615	-	99	47.917	Canis_lupus_dingo
ENSNLEG00000028392	APOBEC3C	100	54.444	ENSTSYG00000034260	-	97	54.444	Carlito_syrichta
ENSNLEG00000028392	APOBEC3C	96	47.541	ENSTSYG00000030036	-	99	47.541	Carlito_syrichta
ENSNLEG00000028392	APOBEC3C	96	54.098	ENSTSYG00000028254	-	99	54.098	Carlito_syrichta
ENSNLEG00000028392	APOBEC3C	97	64.865	ENSCCAG00000030932	-	84	64.865	Cebus_capucinus
ENSNLEG00000028392	APOBEC3C	99	70.430	ENSCATG00000033502	-	100	70.430	Cercocebus_atys
ENSNLEG00000028392	APOBEC3C	100	77.368	ENSCATG00000043226	APOBEC3C	100	77.368	Cercocebus_atys
ENSNLEG00000028392	APOBEC3C	100	77.895	ENSCSAG00000006402	APOBEC3C	100	77.895	Chlorocebus_sabaeus
ENSNLEG00000028392	APOBEC3C	100	72.043	ENSCSAG00000006382	APOBEC3F	100	72.043	Chlorocebus_sabaeus
ENSNLEG00000028392	APOBEC3C	100	74.731	ENSCANG00000032904	-	100	74.731	Colobus_angolensis_palliatus
ENSNLEG00000028392	APOBEC3C	100	69.355	ENSCANG00000031957	-	100	69.355	Colobus_angolensis_palliatus
ENSNLEG00000028392	APOBEC3C	100	68.280	ENSCANG00000033269	-	100	68.280	Colobus_angolensis_palliatus
ENSNLEG00000028392	APOBEC3C	100	79.474	ENSCANG00000039177	APOBEC3C	100	79.474	Colobus_angolensis_palliatus
ENSNLEG00000028392	APOBEC3C	97	39.247	ENSDNOG00000044642	-	99	39.247	Dasypus_novemcinctus
ENSNLEG00000028392	APOBEC3C	100	42.647	ENSEASG00005018641	-	100	42.647	Equus_asinus_asinus
ENSNLEG00000028392	APOBEC3C	98	48.387	ENSECAG00000006071	-	100	46.774	Equus_caballus
ENSNLEG00000028392	APOBEC3C	100	75.806	ENSGGOG00000038678	APOBEC3F	100	75.806	Gorilla_gorilla
ENSNLEG00000028392	APOBEC3C	100	78.421	ENSGGOG00000036587	-	100	78.421	Gorilla_gorilla
ENSNLEG00000028392	APOBEC3C	98	45.161	ENSHGLG00000017315	-	85	45.405	Heterocephalus_glaber_female
ENSNLEG00000028392	APOBEC3C	98	45.161	ENSHGLG00100003105	-	94	45.161	Heterocephalus_glaber_male
ENSNLEG00000028392	APOBEC3C	100	77.368	ENSMFAG00000016792	APOBEC3C	100	77.368	Macaca_fascicularis
ENSNLEG00000028392	APOBEC3C	100	70.968	ENSMFAG00000004037	APOBEC3F	100	70.968	Macaca_fascicularis
ENSNLEG00000028392	APOBEC3C	100	73.118	ENSMFAG00000002331	-	100	73.118	Macaca_fascicularis
ENSNLEG00000028392	APOBEC3C	97	76.630	ENSMMUG00000004018	APOBEC3C	95	76.630	Macaca_mulatta
ENSNLEG00000028392	APOBEC3C	100	74.194	ENSMMUG00000004017	APOBEC3F	100	74.194	Macaca_mulatta
ENSNLEG00000028392	APOBEC3C	100	77.368	ENSMNEG00000045196	APOBEC3C	100	77.368	Macaca_nemestrina
ENSNLEG00000028392	APOBEC3C	100	73.118	ENSMNEG00000043316	APOBEC3D	100	73.118	Macaca_nemestrina
ENSNLEG00000028392	APOBEC3C	100	77.895	ENSMLEG00000036992	APOBEC3C	100	77.895	Mandrillus_leucophaeus
ENSNLEG00000028392	APOBEC3C	100	71.505	ENSMLEG00000029642	APOBEC3F	100	71.505	Mandrillus_leucophaeus
ENSNLEG00000028392	APOBEC3C	99	53.723	ENSMICG00000042615	-	89	53.723	Microcebus_murinus
ENSNLEG00000028392	APOBEC3C	97	46.073	ENSMLUG00000023676	-	99	46.073	Myotis_lucifugus
ENSNLEG00000028392	APOBEC3C	98	44.253	ENSOGAG00000030300	-	97	44.253	Otolemur_garnettii
ENSNLEG00000028392	APOBEC3C	98	48.663	ENSOGAG00000032498	-	99	48.663	Otolemur_garnettii
ENSNLEG00000028392	APOBEC3C	98	45.699	ENSOGAG00000033404	-	100	45.699	Otolemur_garnettii
ENSNLEG00000028392	APOBEC3C	100	73.158	ENSPPAG00000028218	-	100	73.158	Pan_paniscus
ENSNLEG00000028392	APOBEC3C	100	82.632	ENSPPAG00000014118	APOBEC3C	100	82.632	Pan_paniscus
ENSNLEG00000028392	APOBEC3C	97	48.925	ENSPPRG00000003726	-	98	48.925	Panthera_pardus
ENSNLEG00000028392	APOBEC3C	100	75.269	ENSPTRG00000014385	APOBEC3C	100	75.269	Pan_troglodytes
ENSNLEG00000028392	APOBEC3C	100	72.632	ENSPTRG00000041588	APOBEC3D	100	72.632	Pan_troglodytes
ENSNLEG00000028392	APOBEC3C	100	76.842	ENSPANG00000010775	APOBEC3F	100	76.842	Papio_anubis
ENSNLEG00000028392	APOBEC3C	100	82.632	ENSPPYG00000011832	APOBEC3C	100	82.632	Pongo_abelii
ENSNLEG00000028392	APOBEC3C	66	53.175	ENSPCOG00000018072	-	95	53.175	Propithecus_coquereli
ENSNLEG00000028392	APOBEC3C	67	52.344	ENSPCOG00000022067	-	97	52.344	Propithecus_coquereli
ENSNLEG00000028392	APOBEC3C	94	47.967	ENSPVAG00000009461	-	50	47.967	Pteropus_vampyrus
ENSNLEG00000028392	APOBEC3C	100	80.526	ENSRBIG00000030323	-	100	80.526	Rhinopithecus_bieti
ENSNLEG00000028392	APOBEC3C	100	74.194	ENSRBIG00000030834	-	100	74.194	Rhinopithecus_bieti
ENSNLEG00000028392	APOBEC3C	100	72.222	ENSRBIG00000042297	-	99	74.522	Rhinopithecus_bieti
ENSNLEG00000028392	APOBEC3C	100	73.118	ENSRROG00000028557	-	100	73.118	Rhinopithecus_roxellana
ENSNLEG00000028392	APOBEC3C	100	71.667	ENSRROG00000029996	-	100	71.667	Rhinopithecus_roxellana
ENSNLEG00000028392	APOBEC3C	100	80.526	ENSRROG00000029045	APOBEC3C	100	80.526	Rhinopithecus_roxellana
ENSNLEG00000028392	APOBEC3C	100	65.789	ENSSBOG00000032780	-	100	65.789	Saimiri_boliviensis_boliviensis
ENSNLEG00000028392	APOBEC3C	96	50.549	ENSUAMG00000004433	-	100	50.549	Ursus_americanus
ENSNLEG00000028392	APOBEC3C	97	51.351	ENSUMAG00000014441	-	86	51.351	Ursus_maritimus
ENSNLEG00000028392	APOBEC3C	77	51.656	ENSVVUG00000014628	-	91	51.351	Vulpes_vulpes