EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSNLEG00000028944 (Gene tree)
Gene ID: 100598193
Gene Symbol: -
Alias: -
Full Name: RAB13%2C member RAS oncogene family
Gene Type: protein_coding
Species: Nomascus_leucogenys
Status: putative
Strand: Plus strand
Length: 5002 bases
Position: chr12:48184094-48189095
Accession: 100598193
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNLEP00000030724	MMR_HSR1	PF01926.23	0.00018	1	1
ENSNLEP00000028884	MMR_HSR1	PF01926.23	0.00019	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNLET00000037119	-	1195	XM_003259335	ENSNLEP00000028884	203 (aa)	XP_003259383	A0A2I3GC29
ENSNLET00000052866	-	1319	XM_012510957	ENSNLEP00000037948	122 (aa)	XP_012366411	A0A2I3H2S2
ENSNLET00000037157	-	591	-	ENSNLEP00000030724	196 (aa)	-	A0A2I3GHF0

Gene Model

Click here to download ENSNLEG00000028944's gene model file

Pathways

Pathway ID	Pathway Name	Source
nle04530	Tight junction	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSNLEG00000028944's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSNLEG00000028944	-	87	51.744	ENSNLEG00000006939	RAB12	70	51.744
ENSNLEG00000028944	-	91	36.757	ENSNLEG00000027684	KRAS	98	37.436
ENSNLEG00000028944	-	84	38.182	ENSNLEG00000027830	RAB23	69	38.182
ENSNLEG00000028944	-	89	46.927	ENSNLEG00000014505	RAB39B	84	46.927
ENSNLEG00000028944	-	95	39.109	ENSNLEG00000032616	RAB33B	88	39.109
ENSNLEG00000028944	-	87	42.781	ENSNLEG00000034919	RAB33A	79	42.781
ENSNLEG00000028944	-	84	32.121	ENSNLEG00000004500	RHEB	87	32.121
ENSNLEG00000028944	-	84	39.011	ENSNLEG00000002777	RAB34	70	39.011
ENSNLEG00000028944	-	84	45.455	ENSNLEG00000012853	-	88	48.529
ENSNLEG00000028944	-	82	37.423	ENSNLEG00000004197	MRAS	78	37.423
ENSNLEG00000028944	-	82	39.506	ENSNLEG00000008300	HRAS	85	39.506
ENSNLEG00000028944	-	82	38.272	ENSNLEG00000034325	NRAS	85	38.272
ENSNLEG00000028944	-	91	54.348	ENSNLEG00000006058	RAB1B	92	54.348
ENSNLEG00000028944	-	86	48.214	ENSNLEG00000014534	RAB2B	81	48.214
ENSNLEG00000028944	-	86	42.857	ENSNLEG00000012323	RAB25	81	42.197
ENSNLEG00000028944	-	82	34.302	ENSNLEG00000029492	RERG	85	34.302
ENSNLEG00000028944	-	91	42.424	ENSNLEG00000001733	RAB11B	91	42.424
ENSNLEG00000028944	-	77	43.333	ENSNLEG00000003675	RAB6B	73	42.763
ENSNLEG00000028944	-	95	36.979	ENSNLEG00000017570	-	89	36.979
ENSNLEG00000028944	-	86	44.318	ENSNLEG00000016970	RAB18	85	44.318
ENSNLEG00000028944	-	81	40.123	ENSNLEG00000028438	RAB36	51	40.123
ENSNLEG00000028944	-	83	38.824	ENSNLEG00000036073	RAB9A	83	38.824
ENSNLEG00000028944	-	86	37.791	ENSNLEG00000029309	RAB7A	83	37.791
ENSNLEG00000028944	-	65	31.206	ENSNLEG00000010131	ARFRP1	68	31.206
ENSNLEG00000028944	-	62	33.607	ENSNLEG00000030435	-	53	33.607
ENSNLEG00000028944	-	60	32.231	ENSNLEG00000030124	ARL14	60	32.231
ENSNLEG00000028944	-	83	40.476	ENSNLEG00000018324	RAB9B	83	40.476
ENSNLEG00000028944	-	84	44.242	ENSNLEG00000017108	RAB14	77	44.242
ENSNLEG00000028944	-	95	39.062	ENSNLEG00000003434	RAB5A	89	39.062
ENSNLEG00000028944	-	81	43.671	ENSNLEG00000017098	RAB6A	76	43.671
ENSNLEG00000028944	-	88	47.674	ENSNLEG00000036148	RAB2A	80	47.929
ENSNLEG00000028944	-	83	30.682	ENSNLEG00000001103	DNAJC27	90	30.818
ENSNLEG00000028944	-	83	49.383	ENSNLEG00000029364	RAB30	80	49.383

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNLEG00000028944	-	100	100.000	ENSG00000143545	RAB13	100	100.000	Homo_sapiens
ENSNLEG00000028944	-	99	75.124	ENSACIG00000008584	rab13	97	75.124	Amphilophus_citrinellus
ENSNLEG00000028944	-	100	98.522	ENSANAG00000030247	-	100	98.522	Aotus_nancymaae
ENSNLEG00000028944	-	97	81.675	ENSAMXG00000030712	rab13	99	78.713	Astyanax_mexicanus
ENSNLEG00000028944	-	100	98.030	ENSBTAG00000017604	RAB13	100	98.030	Bos_taurus
ENSNLEG00000028944	-	83	47.239	WBGene00019317	K02E10.1	75	47.239	Caenorhabditis_elegans
ENSNLEG00000028944	-	100	98.030	ENSCJAG00000009933	-	100	98.030	Callithrix_jacchus
ENSNLEG00000028944	-	100	97.537	ENSCHIG00000022271	-	100	97.537	Capra_hircus
ENSNLEG00000028944	-	99	91.089	ENSCPOG00000011491	-	99	91.089	Cavia_porcellus
ENSNLEG00000028944	-	100	99.507	ENSCCAG00000028502	-	100	99.507	Cebus_capucinus
ENSNLEG00000028944	-	100	100.000	ENSCATG00000041779	-	100	100.000	Cercocebus_atys
ENSNLEG00000028944	-	100	91.133	ENSCLAG00000006603	-	100	91.133	Chinchilla_lanigera
ENSNLEG00000028944	-	100	100.000	ENSCANG00000036573	-	100	100.000	Colobus_angolensis_palliatus
ENSNLEG00000028944	-	100	95.567	ENSCGRG00001021505	Rab13	100	95.567	Cricetulus_griseus_chok1gshd
ENSNLEG00000028944	-	100	95.567	ENSCGRG00000012126	Rab13	100	95.567	Cricetulus_griseus_crigri
ENSNLEG00000028944	-	94	81.622	ENSCSEG00000002358	rab13	99	75.980	Cynoglossus_semilaevis
ENSNLEG00000028944	-	96	82.011	ENSDARG00000034771	rab13	99	78.218	Danio_rerio
ENSNLEG00000028944	-	100	94.581	ENSDORG00000001591	Rab13	100	94.581	Dipodomys_ordii
ENSNLEG00000028944	-	100	98.522	ENSEASG00005000683	-	100	98.522	Equus_asinus_asinus
ENSNLEG00000028944	-	100	98.522	ENSECAG00000016551	RAB13	100	98.522	Equus_caballus
ENSNLEG00000028944	-	99	90.099	ENSEEUG00000001233	-	99	90.099	Erinaceus_europaeus
ENSNLEG00000028944	-	94	82.162	ENSELUG00000012801	rab13	99	76.733	Esox_lucius
ENSNLEG00000028944	-	100	92.118	ENSFCAG00000045269	-	100	92.118	Felis_catus
ENSNLEG00000028944	-	67	96.970	ENSFDAG00000014469	-	100	96.970	Fukomys_damarensis
ENSNLEG00000028944	-	99	75.743	ENSFHEG00000021221	rab13	95	85.549	Fundulus_heteroclitus
ENSNLEG00000028944	-	94	80.541	ENSGACG00000011925	rab13	99	75.248	Gasterosteus_aculeatus
ENSNLEG00000028944	-	88	90.751	ENSGAGG00000000742	-	99	81.281	Gopherus_agassizii
ENSNLEG00000028944	-	100	100.000	ENSGGOG00000023693	RAB13	100	100.000	Gorilla_gorilla
ENSNLEG00000028944	-	100	90.148	ENSHGLG00000008749	RAB13	100	90.148	Heterocephalus_glaber_female
ENSNLEG00000028944	-	100	90.148	ENSHGLG00100013608	RAB13	100	90.148	Heterocephalus_glaber_male
ENSNLEG00000028944	-	90	84.659	ENSHCOG00000007440	rab13	97	84.659	Hippocampus_comes
ENSNLEG00000028944	-	99	77.000	ENSIPUG00000003199	rab13	99	77.000	Ictalurus_punctatus
ENSNLEG00000028944	-	100	97.044	ENSSTOG00000011222	-	100	97.044	Ictidomys_tridecemlineatus
ENSNLEG00000028944	-	100	92.118	ENSJJAG00000010575	Rab13	100	92.118	Jaculus_jaculus
ENSNLEG00000028944	-	99	75.500	ENSKMAG00000001908	rab13	99	75.500	Kryptolebias_marmoratus
ENSNLEG00000028944	-	99	77.000	ENSLBEG00000026779	rab13	99	77.000	Labrus_bergylta
ENSNLEG00000028944	-	88	77.907	ENSLACG00000008103	-	97	77.907	Latimeria_chalumnae
ENSNLEG00000028944	-	100	100.000	ENSMFAG00000041018	RAB13	100	100.000	Macaca_fascicularis
ENSNLEG00000028944	-	100	100.000	ENSMNEG00000028951	-	100	100.000	Macaca_nemestrina
ENSNLEG00000028944	-	100	100.000	ENSMLEG00000042247	-	100	100.000	Mandrillus_leucophaeus
ENSNLEG00000028944	-	94	80.541	ENSMAMG00000014602	rab13	99	75.248	Mastacembelus_armatus
ENSNLEG00000028944	-	100	94.581	ENSMAUG00000015713	Rab13	100	94.581	Mesocricetus_auratus
ENSNLEG00000028944	-	100	97.044	ENSMICG00000010340	-	100	97.044	Microcebus_murinus
ENSNLEG00000028944	-	100	95.567	ENSMOCG00000021448	Rab13	100	95.567	Microtus_ochrogaster
ENSNLEG00000028944	-	99	92.574	ENSMODG00000017295	-	84	92.574	Monodelphis_domestica
ENSNLEG00000028944	-	100	92.611	MGP_CAROLIEiJ_G0025227	Rab13	100	92.611	Mus_caroli
ENSNLEG00000028944	-	100	91.626	ENSMUSG00000027935	Rab13	100	91.626	Mus_musculus
ENSNLEG00000028944	-	99	92.079	MGP_PahariEiJ_G0026671	Rab13	99	92.079	Mus_pahari
ENSNLEG00000028944	-	100	95.567	ENSNGAG00000010309	Rab13	100	95.567	Nannospalax_galili
ENSNLEG00000028944	-	99	76.923	ENSNBRG00000004124	rab13	99	75.248	Neolamprologus_brichardi
ENSNLEG00000028944	-	100	92.157	ENSMEUG00000009667	-	100	92.157	Notamacropus_eugenii
ENSNLEG00000028944	-	100	89.655	ENSODEG00000010443	-	100	89.655	Octodon_degus
ENSNLEG00000028944	-	65	97.638	ENSODEG00000012634	-	100	97.638	Octodon_degus
ENSNLEG00000028944	-	99	75.743	ENSONIG00000006340	rab13	99	75.743	Oreochromis_niloticus
ENSNLEG00000028944	-	89	95.977	ENSOCUG00000006286	-	100	96.067	Oryctolagus_cuniculus
ENSNLEG00000028944	-	96	80.423	ENSOMEG00000008210	rab13	99	76.238	Oryzias_melastigma
ENSNLEG00000028944	-	99	94.059	ENSOGAG00000016969	-	99	94.059	Otolemur_garnettii
ENSNLEG00000028944	-	100	100.000	ENSPPAG00000028435	-	100	100.000	Pan_paniscus
ENSNLEG00000028944	-	100	92.118	ENSPPRG00000008865	-	100	92.118	Panthera_pardus
ENSNLEG00000028944	-	100	100.000	ENSPTRG00000001370	RAB13	100	100.000	Pan_troglodytes
ENSNLEG00000028944	-	100	100.000	ENSPANG00000004479	-	100	100.000	Papio_anubis
ENSNLEG00000028944	-	99	75.743	ENSPMGG00000007680	rab13	99	75.743	Periophthalmus_magnuspinnatus
ENSNLEG00000028944	-	55	97.222	ENSPEMG00000017353	-	100	97.222	Peromyscus_maniculatus_bairdii
ENSNLEG00000028944	-	100	92.647	ENSPCIG00000029350	-	100	92.647	Phascolarctos_cinereus
ENSNLEG00000028944	-	91	81.667	ENSPLAG00000005832	RAB13	96	81.667	Poecilia_latipinna
ENSNLEG00000028944	-	88	83.815	ENSPREG00000017567	rab13	99	74.257	Poecilia_reticulata
ENSNLEG00000028944	-	100	100.000	ENSPPYG00000000790	-	100	100.000	Pongo_abelii
ENSNLEG00000028944	-	100	98.030	ENSPCOG00000012189	-	100	98.030	Propithecus_coquereli
ENSNLEG00000028944	-	100	95.074	ENSPVAG00000011095	-	100	95.074	Pteropus_vampyrus
ENSNLEG00000028944	-	89	85.143	ENSPNAG00000004189	rab13	93	85.143	Pygocentrus_nattereri
ENSNLEG00000028944	-	100	92.611	ENSRNOG00000016733	Rab13	100	92.611	Rattus_norvegicus
ENSNLEG00000028944	-	100	99.507	ENSRBIG00000008552	-	100	99.507	Rhinopithecus_bieti
ENSNLEG00000028944	-	100	99.507	ENSRROG00000036885	-	100	99.507	Rhinopithecus_roxellana
ENSNLEG00000028944	-	100	99.015	ENSSBOG00000020342	-	100	99.015	Saimiri_boliviensis_boliviensis
ENSNLEG00000028944	-	100	91.667	ENSSHAG00000011866	-	100	91.667	Sarcophilus_harrisii
ENSNLEG00000028944	-	100	98.522	ENSSSCG00000006564	-	100	98.522	Sus_scrofa
ENSNLEG00000028944	-	99	76.733	ENSTRUG00000024177	rab13	99	76.733	Takifugu_rubripes
ENSNLEG00000028944	-	100	97.044	ENSTBEG00000012734	-	100	97.044	Tupaia_belangeri
ENSNLEG00000028944	-	100	99.507	ENSTTRG00000011183	-	100	99.507	Tursiops_truncatus
ENSNLEG00000028944	-	67	86.260	ENSXETG00000020729	rab13	99	78.882	Xenopus_tropicalis
ENSNLEG00000028944	-	91	80.556	ENSXCOG00000019533	rab13	96	80.556	Xiphophorus_couchianus