EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSNLEG00000034844 (Gene tree)
Gene ID: 100586942
Gene Symbol: YBX3
Alias: CSDA|CSDA1|ZONAB|dbpA
Full Name: Y-box binding protein 3
Gene Type: protein_coding
Species: Nomascus_leucogenys
Status: putative
Strand: Plus strand
Length: 21784 bases
Position: chr23:24535297-24557080
Accession: 100586942
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSNLEP00000037184	CSD	PF00313.22	4.5e-16	1	1
ENSNLEP00000030905	CSD	PF00313.22	5.3e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSNLET00000055459	YBX3-202	828	-	ENSNLEP00000037184	275 (aa)	-	A0A2I3H0Q7
ENSNLET00000037597	YBX3-201	1035	XM_003265665	ENSNLEP00000030905	344 (aa)	XP_003265713	A0A2I3GHV3

Gene Model

Click here to download ENSNLEG00000034844's gene model file

Pathways

Pathway ID	Pathway Name	Source
nle04530	Tight junction	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSNLEG00000034844's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSNLEG00000034844	YBX3	87	44.025	ENSNLEG00000006575	-	90	45.775
ENSNLEG00000034844	YBX3	79	44.211	ENSNLEG00000028962	-	97	43.554

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSNLEG00000034844	YBX3	100	94.085	ENSG00000060138	YBX3	95	94.085	Homo_sapiens
ENSNLEG00000034844	YBX3	91	86.916	ENSAMEG00000009393	YBX3	89	88.162	Ailuropoda_melanoleuca
ENSNLEG00000034844	YBX3	81	60.490	ENSAPLG00000003147	YBX3	100	63.287	Anas_platyrhynchos
ENSNLEG00000034844	YBX3	81	86.923	ENSANAG00000033366	-	76	86.923	Aotus_nancymaae
ENSNLEG00000034844	YBX3	91	94.671	ENSANAG00000024492	-	100	94.620	Aotus_nancymaae
ENSNLEG00000034844	YBX3	99	81.818	ENSBTAG00000009663	YBX3	84	80.997	Bos_taurus
ENSNLEG00000034844	YBX3	78	89.286	ENSCJAG00000033824	-	84	89.286	Callithrix_jacchus
ENSNLEG00000034844	YBX3	91	93.417	ENSCJAG00000021660	-	90	93.072	Callithrix_jacchus
ENSNLEG00000034844	YBX3	82	88.194	ENSCAFG00000013401	YBX3	100	88.991	Canis_familiaris
ENSNLEG00000034844	YBX3	91	85.266	ENSCAFG00020006412	YBX3	88	85.843	Canis_lupus_dingo
ENSNLEG00000034844	YBX3	99	81.818	ENSCHIG00000010863	YBX3	88	83.801	Capra_hircus
ENSNLEG00000034844	YBX3	81	90.592	ENSTSYG00000004204	-	88	90.592	Carlito_syrichta
ENSNLEG00000034844	YBX3	99	69.258	ENSTSYG00000035821	-	72	84.043	Carlito_syrichta
ENSNLEG00000034844	YBX3	81	82.578	ENSCAPG00000015039	YBX3	93	84.321	Cavia_aperea
ENSNLEG00000034844	YBX3	83	83.618	ENSCPOG00000011329	YBX3	86	85.324	Cavia_porcellus
ENSNLEG00000034844	YBX3	91	94.044	ENSCCAG00000016469	YBX3	89	93.675	Cebus_capucinus
ENSNLEG00000034844	YBX3	100	93.521	ENSCATG00000034411	YBX3	95	93.521	Cercocebus_atys
ENSNLEG00000034844	YBX3	81	82.927	ENSCLAG00000016030	YBX3	94	84.669	Chinchilla_lanigera
ENSNLEG00000034844	YBX3	100	94.085	ENSCSAG00000008744	YBX3	95	94.085	Chlorocebus_sabaeus
ENSNLEG00000034844	YBX3	83	70.492	ENSCHOG00000011988	YBX3	63	70.492	Choloepus_hoffmanni
ENSNLEG00000034844	YBX3	83	75.342	ENSCPBG00000014147	YBX3	81	76.109	Chrysemys_picta_bellii
ENSNLEG00000034844	YBX3	64	49.198	ENSCING00000010654	yb1/2/3	56	55.280	Ciona_intestinalis
ENSNLEG00000034844	YBX3	90	94.603	ENSCANG00000036801	YBX3	100	94.603	Colobus_angolensis_palliatus
ENSNLEG00000034844	YBX3	90	85.849	ENSCGRG00001016148	Ybx3	87	84.424	Cricetulus_griseus_chok1gshd
ENSNLEG00000034844	YBX3	81	86.644	ENSCGRG00000004563	Ybx3	98	86.644	Cricetulus_griseus_crigri
ENSNLEG00000034844	YBX3	96	77.193	ENSDORG00000009103	Ybx3	81	88.153	Dipodomys_ordii
ENSNLEG00000034844	YBX3	81	81.119	ENSETEG00000002557	YBX3	99	80.702	Echinops_telfairi
ENSNLEG00000034844	YBX3	91	81.931	ENSEASG00005014726	YBX3	83	90.654	Equus_asinus_asinus
ENSNLEG00000034844	YBX3	91	85.358	ENSECAG00000013777	YBX3	89	87.048	Equus_caballus
ENSNLEG00000034844	YBX3	81	88.028	ENSEEUG00000010415	YBX3	100	88.028	Erinaceus_europaeus
ENSNLEG00000034844	YBX3	91	89.097	ENSFCAG00000027748	YBX3	89	90.361	Felis_catus
ENSNLEG00000034844	YBX3	76	84.259	ENSFALG00000003661	YBX3	100	59.722	Ficedula_albicollis
ENSNLEG00000034844	YBX3	81	81.185	ENSFDAG00000021192	YBX3	92	81.882	Fukomys_damarensis
ENSNLEG00000034844	YBX3	77	77.273	ENSGALG00000031890	YBX3	70	86.022	Gallus_gallus
ENSNLEG00000034844	YBX3	83	74.658	ENSGAGG00000017780	YBX3	81	75.768	Gopherus_agassizii
ENSNLEG00000034844	YBX3	100	94.085	ENSGGOG00000001352	YBX3	95	94.085	Gorilla_gorilla
ENSNLEG00000034844	YBX3	85	70.957	ENSHGLG00000014798	-	86	74.832	Heterocephalus_glaber_female
ENSNLEG00000034844	YBX3	78	74.909	ENSHGLG00000015495	-	88	72.425	Heterocephalus_glaber_female
ENSNLEG00000034844	YBX3	77	83.028	ENSHGLG00100003589	YBX3	87	86.301	Heterocephalus_glaber_male
ENSNLEG00000034844	YBX3	81	82.230	ENSSTOG00000002108	-	88	82.230	Ictidomys_tridecemlineatus
ENSNLEG00000034844	YBX3	91	79.310	ENSSTOG00000032577	-	91	81.928	Ictidomys_tridecemlineatus
ENSNLEG00000034844	YBX3	84	66.897	ENSJJAG00000014239	Ybx3	96	73.864	Jaculus_jaculus
ENSNLEG00000034844	YBX3	84	90.508	ENSLAFG00000017247	YBX3	95	85.358	Loxodonta_africana
ENSNLEG00000034844	YBX3	100	93.521	ENSMFAG00000039369	YBX3	95	93.521	Macaca_fascicularis
ENSNLEG00000034844	YBX3	92	95.077	ENSMMUG00000022469	YBX3	100	95.077	Macaca_mulatta
ENSNLEG00000034844	YBX3	100	93.239	ENSMNEG00000045109	YBX3	95	93.239	Macaca_nemestrina
ENSNLEG00000034844	YBX3	81	94.774	ENSMLEG00000033618	YBX3	81	94.425	Mandrillus_leucophaeus
ENSNLEG00000034844	YBX3	75	87.619	ENSMGAG00000014224	YBX3	93	87.356	Meleagris_gallopavo
ENSNLEG00000034844	YBX3	93	85.015	ENSMAUG00000012185	Ybx3	98	83.801	Mesocricetus_auratus
ENSNLEG00000034844	YBX3	83	90.444	ENSMICG00000038002	-	89	90.361	Microcebus_murinus
ENSNLEG00000034844	YBX3	100	71.277	ENSMICG00000031459	-	90	71.809	Microcebus_murinus
ENSNLEG00000034844	YBX3	88	85.531	ENSMOCG00000016291	Ybx3	96	88.475	Microtus_ochrogaster
ENSNLEG00000034844	YBX3	81	79.514	ENSMODG00000018248	YBX3	91	81.597	Monodelphis_domestica
ENSNLEG00000034844	YBX3	90	84.906	MGP_CAROLIEiJ_G0028947	Ybx3	87	83.489	Mus_caroli
ENSNLEG00000034844	YBX3	90	84.906	ENSMUSG00000030189	Ybx3	87	83.489	Mus_musculus
ENSNLEG00000034844	YBX3	90	85.535	MGP_PahariEiJ_G0022709	Ybx3	87	84.112	Mus_pahari
ENSNLEG00000034844	YBX3	90	85.220	MGP_SPRETEiJ_G0029994	Ybx3	87	83.801	Mus_spretus
ENSNLEG00000034844	YBX3	91	75.076	ENSMPUG00000011810	YBX3	86	74.164	Mustela_putorius_furo
ENSNLEG00000034844	YBX3	75	88.848	ENSMLUG00000007476	YBX3	100	88.848	Myotis_lucifugus
ENSNLEG00000034844	YBX3	84	81.818	ENSNGAG00000000710	Ybx3	88	83.929	Nannospalax_galili
ENSNLEG00000034844	YBX3	55	64.706	ENSMEUG00000002507	-	81	71.098	Notamacropus_eugenii
ENSNLEG00000034844	YBX3	91	79.495	ENSODEG00000017957	YBX3	94	81.073	Octodon_degus
ENSNLEG00000034844	YBX3	84	83.390	ENSOCUG00000001889	YBX3	85	84.746	Oryctolagus_cuniculus
ENSNLEG00000034844	YBX3	97	84.986	ENSOGAG00000013245	YBX3	89	87.316	Otolemur_garnettii
ENSNLEG00000034844	YBX3	84	78.859	ENSOARG00000020919	YBX3	99	79.798	Ovis_aries
ENSNLEG00000034844	YBX3	83	95.563	ENSPPAG00000039068	YBX3	82	95.593	Pan_paniscus
ENSNLEG00000034844	YBX3	91	88.785	ENSPPRG00000005859	YBX3	89	90.060	Panthera_pardus
ENSNLEG00000034844	YBX3	81	88.772	ENSPTIG00000005322	YBX3	81	89.895	Panthera_tigris_altaica
ENSNLEG00000034844	YBX3	100	94.085	ENSPTRG00000004681	YBX3	95	94.085	Pan_troglodytes
ENSNLEG00000034844	YBX3	100	93.521	ENSPANG00000010280	YBX3	95	93.521	Papio_anubis
ENSNLEG00000034844	YBX3	76	78.704	ENSPSIG00000009247	YBX3	100	79.630	Pelodiscus_sinensis
ENSNLEG00000034844	YBX3	92	85.494	ENSPEMG00000012132	-	99	84.735	Peromyscus_maniculatus_bairdii
ENSNLEG00000034844	YBX3	88	83.871	ENSPEMG00000010391	-	85	87.611	Peromyscus_maniculatus_bairdii
ENSNLEG00000034844	YBX3	73	75.385	ENSPCIG00000029949	YBX3	100	75.385	Phascolarctos_cinereus
ENSNLEG00000034844	YBX3	100	93.803	ENSPPYG00000004279	YBX3	96	93.803	Pongo_abelii
ENSNLEG00000034844	YBX3	52	100.000	ENSPCAG00000001397	YBX3	76	100.000	Procavia_capensis
ENSNLEG00000034844	YBX3	51	85.792	ENSPCOG00000011663	YBX3	81	80.383	Propithecus_coquereli
ENSNLEG00000034844	YBX3	90	74.528	ENSPVAG00000006740	YBX3	86	74.455	Pteropus_vampyrus
ENSNLEG00000034844	YBX3	90	86.164	ENSRNOG00000005480	Ybx3	87	84.735	Rattus_norvegicus
ENSNLEG00000034844	YBX3	100	92.958	ENSRBIG00000039208	YBX3	89	94.880	Rhinopithecus_bieti
ENSNLEG00000034844	YBX3	100	93.239	ENSRROG00000029638	YBX3	96	93.239	Rhinopithecus_roxellana
ENSNLEG00000034844	YBX3	97	84.071	ENSSBOG00000030573	YBX3	87	91.864	Saimiri_boliviensis_boliviensis
ENSNLEG00000034844	YBX3	81	76.976	ENSSHAG00000003262	YBX3	98	76.976	Sarcophilus_harrisii
ENSNLEG00000034844	YBX3	91	86.068	ENSSSCG00000000633	YBX3	88	87.725	Sus_scrofa
ENSNLEG00000034844	YBX3	66	86.420	ENSTGUG00000012047	YBX3	68	87.209	Taeniopygia_guttata
ENSNLEG00000034844	YBX3	99	83.095	ENSTBEG00000012570	YBX3	81	90.444	Tupaia_belangeri
ENSNLEG00000034844	YBX3	74	80.075	ENSTTRG00000008045	YBX3	97	87.500	Tursiops_truncatus
ENSNLEG00000034844	YBX3	79	83.813	ENSUAMG00000016662	YBX3	100	85.971	Ursus_americanus
ENSNLEG00000034844	YBX3	81	87.368	ENSUMAG00000016118	YBX3	94	89.199	Ursus_maritimus
ENSNLEG00000034844	YBX3	63	100.000	ENSVPAG00000000876	YBX3	100	65.979	Vicugna_pacos
ENSNLEG00000034844	YBX3	79	84.173	ENSVVUG00000004956	YBX3	100	86.691	Vulpes_vulpes
ENSNLEG00000034844	YBX3	77	67.568	ENSXETG00000016239	ybx3	82	80.000	Xenopus_tropicalis