EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSOANG00000003256 (Gene tree)
Gene ID: -
Gene Symbol: LSM1
Alias: -
Full Name: LSM1 homolog%2C mRNA degradation associated
Gene Type: protein_coding
Species: Ornithorhynchus_anatinus
Status: putative
Strand: Plus strand
Length: 43550 bases
Position: chrUltra236:549629-593178
Accession: 20472
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOANP00000005164	LSM	PF01423.22	1.4e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOANT00000005165	LSM1-201	3379	-	ENSOANP00000005164	133 (aa)	XP_007665593	F6RS21

Gene Model

Click here to download ENSOANG00000003256's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSOANG00000003256's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSOANG00000003256	LSM1	61	36.585	ENSOANG00000014536	LSM8	83	36.585

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOANG00000003256	LSM1	100	96.992	ENSG00000175324	LSM1	100	96.992	Homo_sapiens
ENSOANG00000003256	LSM1	100	86.466	ENSAPOG00000010833	lsm1	100	86.466	Acanthochromis_polyacanthus
ENSOANG00000003256	LSM1	100	96.992	ENSAMEG00000011141	LSM1	100	96.992	Ailuropoda_melanoleuca
ENSOANG00000003256	LSM1	58	93.506	ENSACIG00000019593	lsm1	64	93.506	Amphilophus_citrinellus
ENSOANG00000003256	LSM1	100	86.466	ENSAOCG00000017096	lsm1	100	86.466	Amphiprion_ocellaris
ENSOANG00000003256	LSM1	100	86.466	ENSAOCG00000017997	-	100	86.466	Amphiprion_ocellaris
ENSOANG00000003256	LSM1	100	86.466	ENSAPEG00000011669	lsm1	100	86.466	Amphiprion_percula
ENSOANG00000003256	LSM1	100	84.962	ENSATEG00000022266	lsm1	100	84.962	Anabas_testudineus
ENSOANG00000003256	LSM1	100	96.992	ENSANAG00000027785	LSM1	100	96.992	Aotus_nancymaae
ENSOANG00000003256	LSM1	100	84.962	ENSACLG00000011400	lsm1	100	84.962	Astatotilapia_calliptera
ENSOANG00000003256	LSM1	100	87.970	ENSAMXG00000005441	lsm1	100	87.970	Astyanax_mexicanus
ENSOANG00000003256	LSM1	100	96.241	ENSBTAG00000001612	LSM1	100	96.241	Bos_taurus
ENSOANG00000003256	LSM1	87	51.695	WBGene00003076	lsm-1	90	51.695	Caenorhabditis_elegans
ENSOANG00000003256	LSM1	100	96.241	ENSCJAG00000048015	LSM1	100	96.241	Callithrix_jacchus
ENSOANG00000003256	LSM1	100	96.992	ENSCAFG00000006113	LSM1	100	96.992	Canis_familiaris
ENSOANG00000003256	LSM1	100	96.992	ENSCAFG00020001822	LSM1	100	96.992	Canis_lupus_dingo
ENSOANG00000003256	LSM1	100	96.992	ENSCHIG00000013194	LSM1	100	96.992	Capra_hircus
ENSOANG00000003256	LSM1	100	96.992	ENSTSYG00000010394	LSM1	100	96.992	Carlito_syrichta
ENSOANG00000003256	LSM1	100	96.992	ENSCPOG00000032671	LSM1	100	96.992	Cavia_porcellus
ENSOANG00000003256	LSM1	100	96.992	ENSCCAG00000037171	LSM1	100	96.992	Cebus_capucinus
ENSOANG00000003256	LSM1	100	96.992	ENSCATG00000020377	LSM1	100	96.992	Cercocebus_atys
ENSOANG00000003256	LSM1	100	95.489	ENSCLAG00000001137	LSM1	100	95.489	Chinchilla_lanigera
ENSOANG00000003256	LSM1	100	96.992	ENSCSAG00000015485	LSM1	100	96.992	Chlorocebus_sabaeus
ENSOANG00000003256	LSM1	100	96.241	ENSCHOG00000006030	LSM1	100	96.241	Choloepus_hoffmanni
ENSOANG00000003256	LSM1	95	90.551	ENSCPBG00000006569	LSM1	86	90.551	Chrysemys_picta_bellii
ENSOANG00000003256	LSM1	99	69.697	ENSCING00000013536	-	99	69.697	Ciona_intestinalis
ENSOANG00000003256	LSM1	100	96.992	ENSCANG00000019173	LSM1	100	96.992	Colobus_angolensis_palliatus
ENSOANG00000003256	LSM1	100	96.241	ENSCGRG00001024560	-	100	96.241	Cricetulus_griseus_chok1gshd
ENSOANG00000003256	LSM1	80	80.180	ENSCGRG00001002259	-	97	80.180	Cricetulus_griseus_chok1gshd
ENSOANG00000003256	LSM1	100	96.241	ENSCGRG00000006554	-	100	96.241	Cricetulus_griseus_crigri
ENSOANG00000003256	LSM1	80	80.180	ENSCGRG00000013603	-	97	80.180	Cricetulus_griseus_crigri
ENSOANG00000003256	LSM1	100	84.211	ENSCSEG00000010570	lsm1	92	84.211	Cynoglossus_semilaevis
ENSOANG00000003256	LSM1	100	83.459	ENSCSEG00000008319	lsm1	92	83.459	Cynoglossus_semilaevis
ENSOANG00000003256	LSM1	100	84.211	ENSCVAG00000003871	lsm1	100	84.211	Cyprinodon_variegatus
ENSOANG00000003256	LSM1	100	87.218	ENSDARG00000043177	lsm1	100	87.218	Danio_rerio
ENSOANG00000003256	LSM1	100	96.241	ENSDNOG00000032911	-	100	96.241	Dasypus_novemcinctus
ENSOANG00000003256	LSM1	100	90.977	ENSDNOG00000030989	-	100	90.977	Dasypus_novemcinctus
ENSOANG00000003256	LSM1	100	96.992	ENSDNOG00000046387	-	100	96.992	Dasypus_novemcinctus
ENSOANG00000003256	LSM1	89	76.471	ENSDNOG00000046620	-	100	76.471	Dasypus_novemcinctus
ENSOANG00000003256	LSM1	100	96.992	ENSDORG00000028172	Lsm1	100	96.992	Dipodomys_ordii
ENSOANG00000003256	LSM1	93	66.129	FBgn0261067	LSm1	91	66.129	Drosophila_melanogaster
ENSOANG00000003256	LSM1	100	95.489	ENSEASG00005016677	LSM1	100	95.489	Equus_asinus_asinus
ENSOANG00000003256	LSM1	100	95.489	ENSECAG00000010461	LSM1	100	95.489	Equus_caballus
ENSOANG00000003256	LSM1	100	69.173	ENSEEUG00000015181	LSM1	100	69.173	Erinaceus_europaeus
ENSOANG00000003256	LSM1	100	85.714	ENSELUG00000002322	lsm1	100	85.714	Esox_lucius
ENSOANG00000003256	LSM1	100	83.459	ENSELUG00000023374	lsm1	100	83.459	Esox_lucius
ENSOANG00000003256	LSM1	100	96.992	ENSFCAG00000039335	LSM1	100	96.992	Felis_catus
ENSOANG00000003256	LSM1	89	94.915	ENSFALG00000006723	LSM1	100	94.915	Ficedula_albicollis
ENSOANG00000003256	LSM1	100	96.992	ENSFDAG00000007658	LSM1	100	96.992	Fukomys_damarensis
ENSOANG00000003256	LSM1	100	84.211	ENSFHEG00000009556	lsm1	100	84.211	Fundulus_heteroclitus
ENSOANG00000003256	LSM1	100	82.707	ENSGMOG00000016651	lsm1	98	82.707	Gadus_morhua
ENSOANG00000003256	LSM1	100	93.233	ENSGALG00000003245	LSM1	100	93.233	Gallus_gallus
ENSOANG00000003256	LSM1	100	84.211	ENSGAFG00000011355	lsm1	100	84.211	Gambusia_affinis
ENSOANG00000003256	LSM1	100	84.962	ENSGACG00000011763	lsm1	98	84.962	Gasterosteus_aculeatus
ENSOANG00000003256	LSM1	100	96.992	ENSGAGG00000024065	LSM1	100	96.992	Gopherus_agassizii
ENSOANG00000003256	LSM1	100	96.992	ENSGGOG00000022658	LSM1	100	96.992	Gorilla_gorilla
ENSOANG00000003256	LSM1	100	84.962	ENSHBUG00000010897	lsm1	100	84.962	Haplochromis_burtoni
ENSOANG00000003256	LSM1	100	76.692	ENSHGLG00000017574	-	100	76.692	Heterocephalus_glaber_female
ENSOANG00000003256	LSM1	100	96.992	ENSHGLG00000005711	LSM1	100	96.992	Heterocephalus_glaber_female
ENSOANG00000003256	LSM1	100	76.692	ENSHGLG00100012152	-	100	76.692	Heterocephalus_glaber_male
ENSOANG00000003256	LSM1	100	96.992	ENSHGLG00100017660	LSM1	100	96.992	Heterocephalus_glaber_male
ENSOANG00000003256	LSM1	100	84.962	ENSHCOG00000017233	lsm1	100	84.962	Hippocampus_comes
ENSOANG00000003256	LSM1	100	86.466	ENSIPUG00000002312	LSM1	100	86.466	Ictalurus_punctatus
ENSOANG00000003256	LSM1	58	98.701	ENSSTOG00000026870	LSM1	94	98.701	Ictidomys_tridecemlineatus
ENSOANG00000003256	LSM1	100	95.489	ENSJJAG00000014605	-	100	95.489	Jaculus_jaculus
ENSOANG00000003256	LSM1	100	84.962	ENSKMAG00000003016	lsm1	100	84.962	Kryptolebias_marmoratus
ENSOANG00000003256	LSM1	100	84.962	ENSLBEG00000022352	lsm1	100	84.962	Labrus_bergylta
ENSOANG00000003256	LSM1	89	91.525	ENSLACG00000010947	LSM1	98	91.525	Latimeria_chalumnae
ENSOANG00000003256	LSM1	100	93.233	ENSLOCG00000015149	lsm1	100	93.233	Lepisosteus_oculatus
ENSOANG00000003256	LSM1	100	96.992	ENSLAFG00000003534	LSM1	100	96.992	Loxodonta_africana
ENSOANG00000003256	LSM1	100	96.992	ENSMFAG00000032661	LSM1	100	96.992	Macaca_fascicularis
ENSOANG00000003256	LSM1	100	96.992	ENSMLEG00000034535	LSM1	100	96.992	Mandrillus_leucophaeus
ENSOANG00000003256	LSM1	100	84.962	ENSMAMG00000007464	lsm1	100	84.962	Mastacembelus_armatus
ENSOANG00000003256	LSM1	100	84.962	ENSMZEG00005010321	lsm1	100	84.962	Maylandia_zebra
ENSOANG00000003256	LSM1	100	93.233	ENSMGAG00000002125	LSM1	100	93.233	Meleagris_gallopavo
ENSOANG00000003256	LSM1	100	96.992	ENSMICG00000030726	LSM1	100	96.992	Microcebus_murinus
ENSOANG00000003256	LSM1	100	96.241	ENSMOCG00000022817	Lsm1	100	96.241	Microtus_ochrogaster
ENSOANG00000003256	LSM1	100	85.714	ENSMMOG00000015466	lsm1	100	85.714	Mola_mola
ENSOANG00000003256	LSM1	100	99.248	ENSMODG00000010732	-	100	99.248	Monodelphis_domestica
ENSOANG00000003256	LSM1	58	93.506	ENSMALG00000001478	lsm1	82	93.506	Monopterus_albus
ENSOANG00000003256	LSM1	100	94.737	MGP_CAROLIEiJ_G0030930	Lsm1	100	94.737	Mus_caroli
ENSOANG00000003256	LSM1	100	94.737	ENSMUSG00000037296	Lsm1	100	94.737	Mus_musculus
ENSOANG00000003256	LSM1	100	94.737	MGP_PahariEiJ_G0021400	Lsm1	100	94.737	Mus_pahari
ENSOANG00000003256	LSM1	100	94.737	MGP_SPRETEiJ_G0032049	Lsm1	100	94.737	Mus_spretus
ENSOANG00000003256	LSM1	100	97.744	ENSMPUG00000009883	LSM1	100	97.744	Mustela_putorius_furo
ENSOANG00000003256	LSM1	100	96.241	ENSMLUG00000003734	LSM1	100	96.241	Myotis_lucifugus
ENSOANG00000003256	LSM1	100	96.241	ENSNGAG00000003753	Lsm1	100	96.241	Nannospalax_galili
ENSOANG00000003256	LSM1	58	93.506	ENSNBRG00000017370	lsm1	66	93.506	Neolamprologus_brichardi
ENSOANG00000003256	LSM1	100	96.992	ENSNLEG00000029390	LSM1	100	96.992	Nomascus_leucogenys
ENSOANG00000003256	LSM1	100	99.248	ENSMEUG00000014077	LSM1	100	99.248	Notamacropus_eugenii
ENSOANG00000003256	LSM1	88	92.308	ENSOPRG00000000333	LSM1	100	92.308	Ochotona_princeps
ENSOANG00000003256	LSM1	100	96.992	ENSODEG00000004834	LSM1	100	96.992	Octodon_degus
ENSOANG00000003256	LSM1	100	84.962	ENSONIG00000010782	lsm1	100	84.962	Oreochromis_niloticus
ENSOANG00000003256	LSM1	100	96.992	ENSOCUG00000015399	LSM1	100	96.992	Oryctolagus_cuniculus
ENSOANG00000003256	LSM1	100	86.466	ENSORLG00000030288	lsm1	100	86.466	Oryzias_latipes
ENSOANG00000003256	LSM1	100	84.962	ENSORLG00020006213	-	86	84.962	Oryzias_latipes_hni
ENSOANG00000003256	LSM1	100	86.466	ENSORLG00020003941	lsm1	100	86.466	Oryzias_latipes_hni
ENSOANG00000003256	LSM1	100	86.466	ENSORLG00015018350	lsm1	100	86.466	Oryzias_latipes_hsok
ENSOANG00000003256	LSM1	100	84.962	ENSOMEG00000012454	lsm1	100	84.962	Oryzias_melastigma
ENSOANG00000003256	LSM1	100	96.992	ENSOGAG00000015161	LSM1	100	96.992	Otolemur_garnettii
ENSOANG00000003256	LSM1	100	96.992	ENSOARG00000001317	LSM1	100	96.992	Ovis_aries
ENSOANG00000003256	LSM1	100	96.992	ENSPPAG00000032279	LSM1	100	96.992	Pan_paniscus
ENSOANG00000003256	LSM1	100	96.992	ENSPPRG00000014172	-	100	96.992	Panthera_pardus
ENSOANG00000003256	LSM1	100	96.992	ENSPTIG00000010289	LSM1	100	96.992	Panthera_tigris_altaica
ENSOANG00000003256	LSM1	100	96.992	ENSPTRG00000020169	LSM1	100	96.992	Pan_troglodytes
ENSOANG00000003256	LSM1	100	96.992	ENSPANG00000008814	LSM1	100	96.992	Papio_anubis
ENSOANG00000003256	LSM1	100	90.226	ENSPKIG00000001839	lsm1	100	90.226	Paramormyrops_kingsleyae
ENSOANG00000003256	LSM1	100	83.459	ENSPKIG00000019409	LSM1	99	83.459	Paramormyrops_kingsleyae
ENSOANG00000003256	LSM1	98	90.769	ENSPSIG00000012563	LSM1	99	90.769	Pelodiscus_sinensis
ENSOANG00000003256	LSM1	58	93.506	ENSPMGG00000022999	lsm1	73	93.506	Periophthalmus_magnuspinnatus
ENSOANG00000003256	LSM1	85	80.531	ENSPMAG00000002671	lsm1	100	80.531	Petromyzon_marinus
ENSOANG00000003256	LSM1	100	97.744	ENSPCIG00000008880	LSM1	100	97.744	Phascolarctos_cinereus
ENSOANG00000003256	LSM1	100	84.211	ENSPFOG00000016029	lsm1	100	84.211	Poecilia_formosa
ENSOANG00000003256	LSM1	100	84.211	ENSPLAG00000007879	lsm1	100	84.211	Poecilia_latipinna
ENSOANG00000003256	LSM1	100	84.211	ENSPMEG00000023550	lsm1	100	84.211	Poecilia_mexicana
ENSOANG00000003256	LSM1	100	84.211	ENSPREG00000009574	lsm1	100	84.211	Poecilia_reticulata
ENSOANG00000003256	LSM1	100	96.992	ENSPPYG00000018521	LSM1	100	96.992	Pongo_abelii
ENSOANG00000003256	LSM1	100	96.992	ENSPCOG00000020901	-	100	96.992	Propithecus_coquereli
ENSOANG00000003256	LSM1	100	96.992	ENSPVAG00000006016	LSM1	100	96.992	Pteropus_vampyrus
ENSOANG00000003256	LSM1	100	84.962	ENSPNYG00000018067	lsm1	100	84.962	Pundamilia_nyererei
ENSOANG00000003256	LSM1	100	87.218	ENSPNAG00000013707	lsm1	100	87.218	Pygocentrus_nattereri
ENSOANG00000003256	LSM1	100	94.737	ENSRNOG00000015375	Lsm1	100	94.737	Rattus_norvegicus
ENSOANG00000003256	LSM1	100	96.992	ENSRBIG00000027449	LSM1	100	96.992	Rhinopithecus_bieti
ENSOANG00000003256	LSM1	100	96.992	ENSRROG00000036074	LSM1	100	96.992	Rhinopithecus_roxellana
ENSOANG00000003256	LSM1	83	45.299	YJL124C	LSM1	67	45.299	Saccharomyces_cerevisiae
ENSOANG00000003256	LSM1	100	99.248	ENSSHAG00000017260	LSM1	100	99.248	Sarcophilus_harrisii
ENSOANG00000003256	LSM1	100	90.226	ENSSFOG00015019528	lsm1	100	90.226	Scleropages_formosus
ENSOANG00000003256	LSM1	100	84.962	ENSSMAG00000004930	lsm1	100	84.962	Scophthalmus_maximus
ENSOANG00000003256	LSM1	100	84.211	ENSSDUG00000021823	lsm1	100	84.211	Seriola_dumerili
ENSOANG00000003256	LSM1	100	84.211	ENSSLDG00000012154	lsm1	100	84.211	Seriola_lalandi_dorsalis
ENSOANG00000003256	LSM1	100	96.992	ENSSPUG00000014878	LSM1	100	96.992	Sphenodon_punctatus
ENSOANG00000003256	LSM1	100	85.714	ENSSPAG00000020548	lsm1	100	85.714	Stegastes_partitus
ENSOANG00000003256	LSM1	100	95.489	ENSSSCG00000039058	LSM1	100	95.489	Sus_scrofa
ENSOANG00000003256	LSM1	100	96.241	ENSTGUG00000004793	LSM1	100	96.241	Taeniopygia_guttata
ENSOANG00000003256	LSM1	100	87.218	ENSTRUG00000025239	lsm1	100	87.218	Takifugu_rubripes
ENSOANG00000003256	LSM1	100	87.218	ENSTNIG00000004055	lsm1	100	87.218	Tetraodon_nigroviridis
ENSOANG00000003256	LSM1	88	94.872	ENSTBEG00000015884	LSM1	100	94.872	Tupaia_belangeri
ENSOANG00000003256	LSM1	100	96.992	ENSTTRG00000004482	LSM1	100	96.992	Tursiops_truncatus
ENSOANG00000003256	LSM1	100	96.992	ENSUAMG00000004103	LSM1	100	96.992	Ursus_americanus
ENSOANG00000003256	LSM1	100	96.992	ENSUMAG00000009132	LSM1	100	96.992	Ursus_maritimus
ENSOANG00000003256	LSM1	58	97.403	ENSVPAG00000011593	LSM1	100	97.403	Vicugna_pacos
ENSOANG00000003256	LSM1	100	96.992	ENSVVUG00000020191	LSM1	100	96.992	Vulpes_vulpes
ENSOANG00000003256	LSM1	65	68.605	ENSVVUG00000014880	-	91	68.605	Vulpes_vulpes
ENSOANG00000003256	LSM1	100	93.431	ENSXETG00000009004	lsm1	100	93.431	Xenopus_tropicalis
ENSOANG00000003256	LSM1	100	83.459	ENSXCOG00000015631	lsm1	100	83.459	Xiphophorus_couchianus
ENSOANG00000003256	LSM1	100	83.459	ENSXMAG00000026637	lsm1	100	83.459	Xiphophorus_maculatus