EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSOANG00000004568 (Gene tree)
Gene ID: -
Gene Symbol: UPF1
Alias: -
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Ornithorhynchus_anatinus
Status: putative
Strand: Plus strand
Length: 36293 bases
Position: chrUltra49:496736-533028
Accession: 9962
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOANP00000007238	UPF1_Zn_bind	PF09416.10	5.6e-75	1	1
ENSOANP00000007237	UPF1_Zn_bind	PF09416.10	5.6e-75	1	1
ENSOANP00000007238	ResIII	PF04851.15	2e-05	1	1
ENSOANP00000007237	ResIII	PF04851.15	2e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOANT00000007240	UPF1-202	5984	-	ENSOANP00000007238	1126 (aa)	-	F7E547
ENSOANT00000007239	UPF1-201	5987	-	ENSOANP00000007237	1127 (aa)	-	F7E550

Gene Model

Click here to download ENSOANG00000004568's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSOANG00000004568's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOANG00000004568	UPF1	100	97.350	ENSG00000005007	UPF1	100	97.350	Homo_sapiens
ENSOANG00000004568	UPF1	100	90.459	ENSAPOG00000023773	upf1	100	90.724	Acanthochromis_polyacanthus
ENSOANG00000004568	UPF1	100	90.733	ENSAPOG00000010916	-	100	91.681	Acanthochromis_polyacanthus
ENSOANG00000004568	UPF1	100	97.259	ENSAMEG00000011474	UPF1	100	97.259	Ailuropoda_melanoleuca
ENSOANG00000004568	UPF1	100	90.283	ENSACIG00000019949	upf1	100	90.724	Amphilophus_citrinellus
ENSOANG00000004568	UPF1	92	93.250	ENSACIG00000010985	-	100	93.250	Amphilophus_citrinellus
ENSOANG00000004568	UPF1	100	90.733	ENSAOCG00000006352	-	100	91.681	Amphiprion_ocellaris
ENSOANG00000004568	UPF1	100	89.973	ENSAOCG00000018519	upf1	100	90.559	Amphiprion_ocellaris
ENSOANG00000004568	UPF1	100	90.733	ENSAPEG00000006292	-	100	91.681	Amphiprion_percula
ENSOANG00000004568	UPF1	100	89.973	ENSAPEG00000016344	upf1	100	90.559	Amphiprion_percula
ENSOANG00000004568	UPF1	100	89.267	ENSATEG00000017867	upf1	100	90.140	Anabas_testudineus
ENSOANG00000004568	UPF1	100	91.681	ENSATEG00000016606	-	100	91.858	Anabas_testudineus
ENSOANG00000004568	UPF1	94	97.917	ENSAPLG00000009175	UPF1	100	97.917	Anas_platyrhynchos
ENSOANG00000004568	UPF1	98	93.514	ENSANAG00000024107	UPF1	99	93.514	Aotus_nancymaae
ENSOANG00000004568	UPF1	100	90.018	ENSACLG00000007181	upf1	100	90.459	Astatotilapia_calliptera
ENSOANG00000004568	UPF1	100	91.320	ENSACLG00000022630	-	100	91.408	Astatotilapia_calliptera
ENSOANG00000004568	UPF1	100	92.212	ENSAMXG00000042187	upf1	100	92.920	Astyanax_mexicanus
ENSOANG00000004568	UPF1	100	97.609	ENSBTAG00000020922	UPF1	100	97.609	Bos_taurus
ENSOANG00000004568	UPF1	88	50.895	WBGene00004880	smg-2	83	52.947	Caenorhabditis_elegans
ENSOANG00000004568	UPF1	100	97.350	ENSCJAG00000019627	UPF1	100	97.350	Callithrix_jacchus
ENSOANG00000004568	UPF1	100	97.438	ENSCAFG00000014578	UPF1	100	97.438	Canis_familiaris
ENSOANG00000004568	UPF1	100	96.466	ENSCAFG00020012347	UPF1	100	96.466	Canis_lupus_dingo
ENSOANG00000004568	UPF1	100	96.652	ENSCHIG00000011018	UPF1	100	96.652	Capra_hircus
ENSOANG00000004568	UPF1	95	97.300	ENSTSYG00000008877	UPF1	99	97.300	Carlito_syrichta
ENSOANG00000004568	UPF1	93	97.436	ENSCAPG00000005758	UPF1	95	97.436	Cavia_aperea
ENSOANG00000004568	UPF1	100	95.483	ENSCPOG00000025463	UPF1	100	95.483	Cavia_porcellus
ENSOANG00000004568	UPF1	100	97.518	ENSCCAG00000032175	UPF1	100	97.518	Cebus_capucinus
ENSOANG00000004568	UPF1	93	98.481	ENSCATG00000040306	UPF1	98	98.481	Cercocebus_atys
ENSOANG00000004568	UPF1	96	96.494	ENSCLAG00000004037	UPF1	99	98.386	Chinchilla_lanigera
ENSOANG00000004568	UPF1	100	96.378	ENSCSAG00000005276	UPF1	100	96.378	Chlorocebus_sabaeus
ENSOANG00000004568	UPF1	100	96.110	ENSCPBG00000012513	UPF1	100	96.110	Chrysemys_picta_bellii
ENSOANG00000004568	UPF1	78	77.463	ENSCING00000021399	-	99	77.463	Ciona_intestinalis
ENSOANG00000004568	UPF1	99	71.328	ENSCSAVG00000006533	-	99	71.328	Ciona_savignyi
ENSOANG00000004568	UPF1	96	97.127	ENSCANG00000029819	UPF1	99	97.127	Colobus_angolensis_palliatus
ENSOANG00000004568	UPF1	100	96.277	ENSCGRG00001021067	Upf1	100	96.277	Cricetulus_griseus_chok1gshd
ENSOANG00000004568	UPF1	95	96.561	ENSCGRG00000013480	Upf1	100	96.561	Cricetulus_griseus_crigri
ENSOANG00000004568	UPF1	100	91.489	ENSCSEG00000016159	-	100	91.578	Cynoglossus_semilaevis
ENSOANG00000004568	UPF1	100	85.740	ENSCSEG00000017239	upf1	100	85.740	Cynoglossus_semilaevis
ENSOANG00000004568	UPF1	100	91.062	ENSCVAG00000010561	upf1	100	91.150	Cyprinodon_variegatus
ENSOANG00000004568	UPF1	100	92.035	ENSDARG00000016302	upf1	100	92.743	Danio_rerio
ENSOANG00000004568	UPF1	94	94.850	ENSDORG00000009984	Upf1	96	94.850	Dipodomys_ordii
ENSOANG00000004568	UPF1	86	70.123	FBgn0030354	Upf1	84	66.889	Drosophila_melanogaster
ENSOANG00000004568	UPF1	56	84.320	ENSEBUG00000010069	upf1	96	83.943	Eptatretus_burgeri
ENSOANG00000004568	UPF1	100	96.546	ENSEASG00005006549	UPF1	100	96.546	Equus_asinus_asinus
ENSOANG00000004568	UPF1	100	96.546	ENSECAG00000010639	UPF1	100	96.546	Equus_caballus
ENSOANG00000004568	UPF1	100	90.325	ENSELUG00000012916	-	100	91.109	Esox_lucius
ENSOANG00000004568	UPF1	100	90.035	ENSELUG00000020917	upf1	100	90.212	Esox_lucius
ENSOANG00000004568	UPF1	100	97.350	ENSFCAG00000009757	UPF1	100	97.350	Felis_catus
ENSOANG00000004568	UPF1	96	95.588	ENSFALG00000009312	UPF1	99	95.588	Ficedula_albicollis
ENSOANG00000004568	UPF1	97	95.872	ENSFDAG00000014816	UPF1	99	98.291	Fukomys_damarensis
ENSOANG00000004568	UPF1	85	92.405	ENSFHEG00000016276	-	96	92.948	Fundulus_heteroclitus
ENSOANG00000004568	UPF1	100	88.116	ENSFHEG00000006428	upf1	100	88.116	Fundulus_heteroclitus
ENSOANG00000004568	UPF1	100	91.408	ENSGMOG00000007541	upf1	100	91.674	Gadus_morhua
ENSOANG00000004568	UPF1	100	96.025	ENSGALG00000003220	UPF1	100	96.025	Gallus_gallus
ENSOANG00000004568	UPF1	63	93.777	ENSGAFG00000015443	-	88	91.507	Gambusia_affinis
ENSOANG00000004568	UPF1	100	91.223	ENSGAFG00000004831	upf1	100	91.312	Gambusia_affinis
ENSOANG00000004568	UPF1	100	96.368	ENSGAGG00000022217	UPF1	100	96.368	Gopherus_agassizii
ENSOANG00000004568	UPF1	93	97.531	ENSGGOG00000002608	UPF1	99	97.531	Gorilla_gorilla
ENSOANG00000004568	UPF1	91	77.837	ENSHBUG00000014694	upf1	100	78.266	Haplochromis_burtoni
ENSOANG00000004568	UPF1	87	97.436	ENSHBUG00000008939	upf1	95	97.436	Haplochromis_burtoni
ENSOANG00000004568	UPF1	100	96.908	ENSHGLG00000010900	UPF1	100	96.908	Heterocephalus_glaber_female
ENSOANG00000004568	UPF1	94	95.677	ENSHGLG00100005904	UPF1	97	95.677	Heterocephalus_glaber_male
ENSOANG00000004568	UPF1	100	91.320	ENSHCOG00000008918	upf1	100	92.639	Hippocampus_comes
ENSOANG00000004568	UPF1	100	92.478	ENSIPUG00000005108	UPF1	100	93.097	Ictalurus_punctatus
ENSOANG00000004568	UPF1	100	97.695	ENSSTOG00000009196	UPF1	100	97.695	Ictidomys_tridecemlineatus
ENSOANG00000004568	UPF1	100	96.720	ENSJJAG00000023151	Upf1	100	96.720	Jaculus_jaculus
ENSOANG00000004568	UPF1	100	91.327	ENSKMAG00000004962	upf1	100	91.416	Kryptolebias_marmoratus
ENSOANG00000004568	UPF1	100	90.909	ENSLBEG00000027848	-	100	91.270	Labrus_bergylta
ENSOANG00000004568	UPF1	100	88.549	ENSLBEG00000014862	upf1	100	89.773	Labrus_bergylta
ENSOANG00000004568	UPF1	62	97.139	ENSLACG00000008482	UPF1	100	97.139	Latimeria_chalumnae
ENSOANG00000004568	UPF1	100	93.357	ENSLOCG00000002072	upf1	100	94.154	Lepisosteus_oculatus
ENSOANG00000004568	UPF1	100	96.649	ENSLAFG00000014963	UPF1	100	96.649	Loxodonta_africana
ENSOANG00000004568	UPF1	100	97.518	ENSMFAG00000037748	UPF1	100	97.518	Macaca_fascicularis
ENSOANG00000004568	UPF1	100	97.606	ENSMMUG00000023286	UPF1	100	97.606	Macaca_mulatta
ENSOANG00000004568	UPF1	100	97.518	ENSMNEG00000000046	UPF1	100	97.518	Macaca_nemestrina
ENSOANG00000004568	UPF1	93	98.575	ENSMLEG00000028404	UPF1	99	98.575	Mandrillus_leucophaeus
ENSOANG00000004568	UPF1	100	90.885	ENSMAMG00000006231	-	100	91.593	Mastacembelus_armatus
ENSOANG00000004568	UPF1	100	89.092	ENSMAMG00000006229	upf1	100	90.227	Mastacembelus_armatus
ENSOANG00000004568	UPF1	100	91.320	ENSMZEG00005016386	-	100	91.408	Maylandia_zebra
ENSOANG00000004568	UPF1	100	88.996	ENSMZEG00005003489	upf1	100	90.263	Maylandia_zebra
ENSOANG00000004568	UPF1	93	97.438	ENSMGAG00000004745	UPF1	100	97.438	Meleagris_gallopavo
ENSOANG00000004568	UPF1	95	96.289	ENSMAUG00000011398	Upf1	97	96.289	Mesocricetus_auratus
ENSOANG00000004568	UPF1	100	96.290	ENSMICG00000001659	UPF1	100	96.290	Microcebus_murinus
ENSOANG00000004568	UPF1	100	97.074	ENSMOCG00000005699	Upf1	100	97.074	Microtus_ochrogaster
ENSOANG00000004568	UPF1	94	90.113	ENSMMOG00000007537	-	99	91.107	Mola_mola
ENSOANG00000004568	UPF1	100	89.530	ENSMMOG00000007881	upf1	100	90.160	Mola_mola
ENSOANG00000004568	UPF1	100	97.357	ENSMODG00000003689	UPF1	100	97.357	Monodelphis_domestica
ENSOANG00000004568	UPF1	100	89.446	ENSMALG00000018100	-	100	90.300	Monopterus_albus
ENSOANG00000004568	UPF1	100	89.973	ENSMALG00000000144	upf1	100	90.417	Monopterus_albus
ENSOANG00000004568	UPF1	100	97.163	MGP_CAROLIEiJ_G0031142	Upf1	100	97.163	Mus_caroli
ENSOANG00000004568	UPF1	100	97.163	ENSMUSG00000058301	Upf1	100	97.163	Mus_musculus
ENSOANG00000004568	UPF1	100	97.163	MGP_PahariEiJ_G0021607	Upf1	100	97.163	Mus_pahari
ENSOANG00000004568	UPF1	100	97.163	MGP_SPRETEiJ_G0032260	Upf1	100	97.163	Mus_spretus
ENSOANG00000004568	UPF1	100	96.466	ENSMPUG00000015516	UPF1	100	96.466	Mustela_putorius_furo
ENSOANG00000004568	UPF1	99	96.365	ENSMLUG00000012122	UPF1	99	96.365	Myotis_lucifugus
ENSOANG00000004568	UPF1	100	96.903	ENSNGAG00000024107	Upf1	100	96.903	Nannospalax_galili
ENSOANG00000004568	UPF1	100	89.052	ENSNBRG00000022069	-	100	92.226	Neolamprologus_brichardi
ENSOANG00000004568	UPF1	100	88.339	ENSNBRG00000000670	upf1	100	88.781	Neolamprologus_brichardi
ENSOANG00000004568	UPF1	93	92.783	ENSNLEG00000006062	UPF1	99	92.783	Nomascus_leucogenys
ENSOANG00000004568	UPF1	83	93.750	ENSMEUG00000014146	-	83	93.750	Notamacropus_eugenii
ENSOANG00000004568	UPF1	93	89.554	ENSOPRG00000014018	UPF1	99	89.269	Ochotona_princeps
ENSOANG00000004568	UPF1	100	96.631	ENSODEG00000012426	UPF1	100	96.631	Octodon_degus
ENSOANG00000004568	UPF1	100	91.320	ENSONIG00000012729	-	100	91.408	Oreochromis_niloticus
ENSOANG00000004568	UPF1	100	89.258	ENSONIG00000010452	upf1	100	90.526	Oreochromis_niloticus
ENSOANG00000004568	UPF1	100	91.770	ENSORLG00000008453	upf1	100	91.770	Oryzias_latipes
ENSOANG00000004568	UPF1	100	91.689	ENSORLG00020014758	upf1	100	91.689	Oryzias_latipes_hni
ENSOANG00000004568	UPF1	100	91.689	ENSORLG00015010165	upf1	100	91.689	Oryzias_latipes_hsok
ENSOANG00000004568	UPF1	100	91.681	ENSOMEG00000003665	upf1	100	91.770	Oryzias_melastigma
ENSOANG00000004568	UPF1	100	96.466	ENSOGAG00000012866	UPF1	100	96.466	Otolemur_garnettii
ENSOANG00000004568	UPF1	96	96.140	ENSOARG00000010739	UPF1	100	95.600	Ovis_aries
ENSOANG00000004568	UPF1	96	97.127	ENSPPAG00000043884	UPF1	98	97.127	Pan_paniscus
ENSOANG00000004568	UPF1	100	97.350	ENSPPRG00000023470	UPF1	100	97.350	Panthera_pardus
ENSOANG00000004568	UPF1	94	95.450	ENSPTIG00000010159	UPF1	100	95.360	Panthera_tigris_altaica
ENSOANG00000004568	UPF1	100	97.518	ENSPTRG00000010721	UPF1	100	97.518	Pan_troglodytes
ENSOANG00000004568	UPF1	100	97.518	ENSPANG00000008847	UPF1	100	97.518	Papio_anubis
ENSOANG00000004568	UPF1	91	93.901	ENSPKIG00000006069	upf1	96	94.358	Paramormyrops_kingsleyae
ENSOANG00000004568	UPF1	68	97.523	ENSPSIG00000009491	UPF1	100	97.523	Pelodiscus_sinensis
ENSOANG00000004568	UPF1	100	88.781	ENSPMGG00000017327	upf1	100	89.065	Periophthalmus_magnuspinnatus
ENSOANG00000004568	UPF1	100	97.252	ENSPEMG00000001085	Upf1	100	97.252	Peromyscus_maniculatus_bairdii
ENSOANG00000004568	UPF1	100	87.168	ENSPMAG00000001206	upf1	100	86.749	Petromyzon_marinus
ENSOANG00000004568	UPF1	100	96.905	ENSPCIG00000006156	UPF1	100	96.905	Phascolarctos_cinereus
ENSOANG00000004568	UPF1	100	91.223	ENSPLAG00000016232	-	100	91.312	Poecilia_latipinna
ENSOANG00000004568	UPF1	100	89.016	ENSPLAG00000018155	-	100	89.016	Poecilia_latipinna
ENSOANG00000004568	UPF1	100	91.312	ENSPMEG00000016319	-	100	91.401	Poecilia_mexicana
ENSOANG00000004568	UPF1	100	89.558	ENSPMEG00000011443	-	100	89.558	Poecilia_mexicana
ENSOANG00000004568	UPF1	100	89.367	ENSPREG00000009940	upf1	100	89.367	Poecilia_reticulata
ENSOANG00000004568	UPF1	100	91.223	ENSPREG00000011247	-	100	91.312	Poecilia_reticulata
ENSOANG00000004568	UPF1	100	92.403	ENSPPYG00000009752	UPF1	100	92.403	Pongo_abelii
ENSOANG00000004568	UPF1	76	99.331	ENSPCAG00000012962	UPF1	76	99.331	Procavia_capensis
ENSOANG00000004568	UPF1	100	97.606	ENSPCOG00000023813	UPF1	100	97.606	Propithecus_coquereli
ENSOANG00000004568	UPF1	69	97.436	ENSPVAG00000003183	UPF1	69	97.436	Pteropus_vampyrus
ENSOANG00000004568	UPF1	100	91.320	ENSPNYG00000016731	-	100	91.504	Pundamilia_nyererei
ENSOANG00000004568	UPF1	100	88.996	ENSPNYG00000003694	upf1	100	90.263	Pundamilia_nyererei
ENSOANG00000004568	UPF1	100	92.212	ENSPNAG00000025614	upf1	100	92.920	Pygocentrus_nattereri
ENSOANG00000004568	UPF1	100	97.163	ENSRNOG00000020134	Upf1	100	97.163	Rattus_norvegicus
ENSOANG00000004568	UPF1	95	95.247	ENSRBIG00000013894	UPF1	98	97.408	Rhinopithecus_bieti
ENSOANG00000004568	UPF1	95	97.577	ENSRROG00000040935	UPF1	99	97.577	Rhinopithecus_roxellana
ENSOANG00000004568	UPF1	77	54.147	YMR080C	NAM7	85	55.006	Saccharomyces_cerevisiae
ENSOANG00000004568	UPF1	95	97.111	ENSSBOG00000023632	UPF1	98	97.111	Saimiri_boliviensis_boliviensis
ENSOANG00000004568	UPF1	93	98.860	ENSSHAG00000010499	UPF1	100	98.860	Sarcophilus_harrisii
ENSOANG00000004568	UPF1	100	94.243	ENSSFOG00015021095	upf1	100	95.652	Scleropages_formosus
ENSOANG00000004568	UPF1	100	90.973	ENSSMAG00000021018	-	100	91.504	Scophthalmus_maximus
ENSOANG00000004568	UPF1	100	88.287	ENSSMAG00000005055	upf1	100	89.248	Scophthalmus_maximus
ENSOANG00000004568	UPF1	100	89.180	ENSSDUG00000013320	upf1	100	90.314	Seriola_dumerili
ENSOANG00000004568	UPF1	100	91.593	ENSSDUG00000009629	-	100	91.947	Seriola_dumerili
ENSOANG00000004568	UPF1	100	89.965	ENSSLDG00000020868	upf1	100	90.598	Seriola_lalandi_dorsalis
ENSOANG00000004568	UPF1	100	91.593	ENSSLDG00000006878	-	100	91.947	Seriola_lalandi_dorsalis
ENSOANG00000004568	UPF1	100	96.454	ENSSPUG00000010538	UPF1	100	96.454	Sphenodon_punctatus
ENSOANG00000004568	UPF1	100	88.287	ENSSPAG00000000003	upf1	100	88.516	Stegastes_partitus
ENSOANG00000004568	UPF1	100	91.585	ENSSPAG00000011521	-	100	91.674	Stegastes_partitus
ENSOANG00000004568	UPF1	100	97.520	ENSSSCG00000039301	UPF1	100	97.520	Sus_scrofa
ENSOANG00000004568	UPF1	83	89.597	ENSTGUG00000001057	UPF1	100	95.414	Taeniopygia_guttata
ENSOANG00000004568	UPF1	100	90.691	ENSTRUG00000005131	-	100	90.691	Takifugu_rubripes
ENSOANG00000004568	UPF1	100	89.876	ENSTRUG00000000150	upf1	100	89.876	Takifugu_rubripes
ENSOANG00000004568	UPF1	100	92.737	ENSTTRG00000011544	UPF1	100	92.737	Tursiops_truncatus
ENSOANG00000004568	UPF1	100	96.378	ENSUAMG00000007093	UPF1	100	96.378	Ursus_americanus
ENSOANG00000004568	UPF1	95	97.844	ENSUMAG00000006652	UPF1	99	97.851	Ursus_maritimus
ENSOANG00000004568	UPF1	100	96.466	ENSVVUG00000007797	UPF1	100	96.466	Vulpes_vulpes
ENSOANG00000004568	UPF1	100	82.146	ENSXETG00000013602	upf1	100	82.146	Xenopus_tropicalis
ENSOANG00000004568	UPF1	92	93.289	ENSXCOG00000005764	-	100	93.289	Xiphophorus_couchianus
ENSOANG00000004568	UPF1	97	89.368	ENSXCOG00000015275	-	96	89.276	Xiphophorus_couchianus
ENSOANG00000004568	UPF1	100	89.707	ENSXMAG00000001703	-	100	89.618	Xiphophorus_maculatus
ENSOANG00000004568	UPF1	100	91.223	ENSXMAG00000002540	-	100	91.312	Xiphophorus_maculatus